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Conserved domains on  [gi|1014558024|gb|KYW47987|]
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hypothetical protein AMK97_00005, partial [Escherichia coli]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
auto_AIDA-I super family cl40320
autotransporter adhesin AIDA-I;
89-184 1.04e-08

autotransporter adhesin AIDA-I;


The actual alignment was detected with superfamily member NF033176:

Pssm-ID: 380183 [Multi-domain]  Cd Length: 1287  Bit Score: 54.28  E-value: 1.04e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1014558024   89 GSQRVDERGTTNNTHIINHGQQNV-HGGVSNGSLIESGGYQDVGSHnnfvGQANNTTIN-GGRQTIHDGGISTGTIIDSG 166
Cdd:NF033176   385 GTQSVLSGGYASGTLINNSGRENVsNGGSAYNTIINAGGNQYIYSN----GEASGTTVNtSGFQRVNSGGTATGTKLSGG 460

                           90
                   ....*....|....*...
gi 1014558024  167 NQDVYTGGISNGTTIKGG 184
Cdd:NF033176   461 NQNVSSGGKAIAAEVYSG 478
 
Name Accession Description Interval E-value
auto_AIDA-I NF033176
autotransporter adhesin AIDA-I;
89-184 1.04e-08

autotransporter adhesin AIDA-I;


Pssm-ID: 380183 [Multi-domain]  Cd Length: 1287  Bit Score: 54.28  E-value: 1.04e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1014558024   89 GSQRVDERGTTNNTHIINHGQQNV-HGGVSNGSLIESGGYQDVGSHnnfvGQANNTTIN-GGRQTIHDGGISTGTIIDSG 166
Cdd:NF033176   385 GTQSVLSGGYASGTLINNSGRENVsNGGSAYNTIINAGGNQYIYSN----GEASGTTVNtSGFQRVNSGGTATGTKLSGG 460

                           90
                   ....*....|....*...
gi 1014558024  167 NQDVYTGGISNGTTIKGG 184
Cdd:NF033176   461 NQNVSSGGKAIAAEVYSG 478
auto_AIDA-I NF033176
autotransporter adhesin AIDA-I;
89-184 3.89e-08

autotransporter adhesin AIDA-I;


Pssm-ID: 380183 [Multi-domain]  Cd Length: 1287  Bit Score: 52.35  E-value: 3.89e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1014558024   89 GSQRVDERGTTNNTHIINHGQQNV-HGGVSNGSLIESGGYQdvgsHNNFVGQANNTTIN-GGRQTIHDGGISTGTIIDSG 166
Cdd:NF033176   179 GQQRVSSGGVASNTTINSSGTQNIlSGGSTVSTHISSGGNQ----YISAGGNASATVVSsGGFQRVSSGGTATGTVLSGG 254

                           90
                   ....*....|....*...
gi 1014558024  167 NQDVYTGGISNGTTIKGG 184
Cdd:NF033176   255 TQNVSSGGSAISTSVYSS 272
auto_AIDA-I NF033176
autotransporter adhesin AIDA-I;
89-181 4.48e-08

autotransporter adhesin AIDA-I;


Pssm-ID: 380183 [Multi-domain]  Cd Length: 1287  Bit Score: 52.35  E-value: 4.48e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1014558024   89 GSQRVDERGTTNNTHIINHGQQNV-HGGVSNGSLIESGGYQDV-------------GSHNNF-VGQANNTTI-NGGRQTI 152
Cdd:NF033176    85 GIQNVNNGGKTTSTTVNSSGAQNVgNSGTAISTIVNSGGVQRVssggvtsatslsgGAQNIYnLGHASNTVIfNGGNQTI 164

                           90       100       110
                   ....*....|....*....|....*....|
gi 1014558024  153 HDGGISTGTIIDSGNQD-VYTGGISNGTTI 181
Cdd:NF033176   165 FSGGISDDTNISSGGQQrVSSGGVASNTTI 194
auto_AIDA-I NF033176
autotransporter adhesin AIDA-I;
80-184 2.12e-06

autotransporter adhesin AIDA-I;


Pssm-ID: 380183 [Multi-domain]  Cd Length: 1287  Bit Score: 47.35  E-value: 2.12e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1014558024   80 GVVNDETVDG--SQRVDERGTTNNTHIINHGQQNV-HGGVSNGSLIESGGYQDVGSHNNFV---------------GQAN 141
Cdd:NF033176    55 GVVSGGVVSSgeTQVVYSNGQTSNATVNSGGIQNVnNGGKTTSTTVNSSGAQNVGNSGTAIstivnsggvqrvssgGVTS 134

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1014558024  142 NTTINGGRQTIHDGGISTGTII-DSGNQDVYTGGISNGTTIKGG 184
Cdd:NF033176   135 ATSLSGGAQNIYNLGHASNTVIfNGGNQTIFSGGISDDTNISSG 178
auto_AIDA-I NF033176
autotransporter adhesin AIDA-I;
80-187 3.71e-06

autotransporter adhesin AIDA-I;


Pssm-ID: 380183 [Multi-domain]  Cd Length: 1287  Bit Score: 46.58  E-value: 3.71e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1014558024   80 GVVNDETVD--GSQRVDERGTTNNTHIINHGQQNVH-GGVSNGSLIESGGYQDVGSHNNFV--------------GQANN 142
Cdd:NF033176   187 GVASNTTINssGTQNILSGGSTVSTHISSGGNQYISaGGNASATVVSSGGFQRVSSGGTATgtvlsggtqnvssgGSAIS 266

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1014558024  143 TTI-NGGRQTIHDGGISTGTIIDS-GNQDVYTGGISNGTTIKGGNSH 187
Cdd:NF033176   267 TSVySSGVQTVYAGATVTDTTVNSgGKQNISSGGIVSGTIVNSSGTQ 313
auto_AIDA-I NF033176
autotransporter adhesin AIDA-I;
89-196 7.67e-06

autotransporter adhesin AIDA-I;


Pssm-ID: 380183 [Multi-domain]  Cd Length: 1287  Bit Score: 45.81  E-value: 7.67e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1014558024   89 GSQRVDERGTTNNThIINHGQQNVH-GGVSNGSLIESGGYQDVGSHNNfvgqANNTTIN-GGRQTIHDGGISTGTIID-S 165
Cdd:NF033176   236 GFQRVSSGGTATGT-VLSGGTQNVSsGGSAISTSVYSSGVQTVYAGAT----VTDTTVNsGGKQNISSGGIVSGTIVNsS 310

                           90       100       110
                   ....*....|....*....|....*....|.
gi 1014558024  166 GNQDVYTGGISNGTTIKGGNSHCSGTLNLAT 196
Cdd:NF033176   311 GTQNIYSGGSALSANIKGSQIVNSDGTAINT 341
AIDA pfam16168
Adhesin of bacterial autotransporter system, probable stalk; The AIDA repeat is found on ...
 108-167 2.12e-05

Adhesin of bacterial autotransporter system, probable stalk; The AIDA repeat is found on bacterial autotransporter proteins. As the repeat is short and occurs multiple times, it is likely to be the region of the transporter that acts as the stalk between the beta-barrel inserted into the membrane and the N-terminal head domain.


Pssm-ID: 406554 [Multi-domain]  Cd Length: 57  Bit Score: 40.78  E-value: 2.12e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1014558024 108 GQQNVHGGVSNGSLIESGGYQDVGSHnnfvGQANNTTIN-GGRQTIHDGGISTGTIIDSGN 167
Cdd:pfam16168   1 GAFSISGGVADNVLLENGGSLTVVAG----TSATDTTVDkGGTLDVQSGGTATGTVVNNGG 57
auto_AIDA-I NF033176
autotransporter adhesin AIDA-I;
89-184 3.55e-05

autotransporter adhesin AIDA-I;


Pssm-ID: 380183 [Multi-domain]  Cd Length: 1287  Bit Score: 43.88  E-value: 3.55e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1014558024   89 GSQRVDERGTTNNTHIINHGQQNVHGGVSNGSLIESGGYQDVgshnnFVGQANNTTING-GRQTIHDGGISTGTIIDS-G 166
Cdd:NF033176   479 GKQTVYAGGEASGTQIFDGGVVNVSGGSVSGASVNLNGRLNV-----FAGNVTGTILNQeGRQYIYSGASATSTVANNeG 553

                           90
                   ....*....|....*...
gi 1014558024  167 NQDVYTGGISNGTTIKGG 184
Cdd:NF033176   554 REYVLSGGVADGTVLNSG 571
auto_AIDA-I NF033176
autotransporter adhesin AIDA-I;
89-184 6.02e-05

autotransporter adhesin AIDA-I;


Pssm-ID: 380183 [Multi-domain]  Cd Length: 1287  Bit Score: 43.11  E-value: 6.02e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1014558024   89 GSQRVDERGTTNNTHIINHGQQNVH-GGVSNGSLIESGGYQDVGSHN-------------NFVGQANNTTIN-GGRQTIH 153
Cdd:NF033176   273 GVQTVYAGATVTDTTVNSGGKQNISsGGIVSGTIVNSSGTQNIYSGGsalsanikgsqivNSDGTAINTLVNdGGYQHIR 352

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1014558024  154 DGGISTGTIID-SGNQDVYTGGISNGTTIKGG 184
Cdd:NF033176   353 NGGVASGTIINqSGRVNISSGGYAESTIINSG 384
auto_AIDA-I NF033176
autotransporter adhesin AIDA-I;
110-184 1.15e-04

autotransporter adhesin AIDA-I;


Pssm-ID: 380183 [Multi-domain]  Cd Length: 1287  Bit Score: 42.34  E-value: 1.15e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1014558024  110 QNVHGGVSNGSLIESGGYQDVGSHnnfvGQANNTTIN-GGRQTIHDGGISTGTIID-SGNQDVYTGGISNGTTIKGG 184
Cdd:NF033176    50 QNISSGVVSGGVVSSGETQVVYSN----GQTSNATVNsGGIQNVNNGGKTTSTTVNsSGAQNVGNSGTAISTIVNSG 122
auto_AIDA-I NF033176
autotransporter adhesin AIDA-I;
89-194 5.77e-04

autotransporter adhesin AIDA-I;


Pssm-ID: 380183 [Multi-domain]  Cd Length: 1287  Bit Score: 40.03  E-value: 5.77e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1014558024   89 GSQRVDERGTTNNTHIINHGQQNVH-GGVSNGSLIESGGYQDVGS-----HNNFVGQANNTT----------INGGRQTI 152
Cdd:NF033176   404 GRENVSNGGSAYNTIINAGGNQYIYsNGEASGTTVNTSGFQRVNSggtatGTKLSGGNQNVSsggkaiaaevYSGGKQTV 483

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1014558024  153 HDGGISTGTIIdsgnqdvYTGGISN--GTTIKGGNSHCSGTLNL 194
Cdd:NF033176   484 YAGGEASGTQI-------FDGGVVNvsGGSVSGASVNLNGRLNV 520
auto_AIDA-I NF033176
autotransporter adhesin AIDA-I;
71-184 6.10e-04

autotransporter adhesin AIDA-I;


Pssm-ID: 380183 [Multi-domain]  Cd Length: 1287  Bit Score: 40.03  E-value: 6.10e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1014558024   71 MTAFTPDVIGVVNDEtvDGSQRVDERGTTNNTHIINHGQQNV-HGGVSNGSLIESGGYQDVGSHnnfvGQANNTTINGGr 149
Cdd:NF033176   518 LNVFAGNVTGTILNQ--EGRQYIYSGASATSTVANNEGREYVlSGGVADGTVLNSGGLQAVSSG----GSASATVINEG- 590

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 1014558024  150 qtihdggistgtiidsGNQDVYTGGISNGTTIKGG 184
Cdd:NF033176   591 ----------------GSQFVYEGGNVTGTVIKNG 609
O_hepto_targRPT TIGR04415
autotransporter passenger strand-loop-strand repeat; This model describes two tandem copies of ...
 140-174 8.96e-03

autotransporter passenger strand-loop-strand repeat; This model describes two tandem copies of a strand-loop-strand repeat that occurs often in type V secretion system (T5SS). These repeats usually occur in the passenger domain of the classical monomeric autotransporter. Proteins with this repeat often are encoded next to a member of family TIGR04414, the Aah/TibC family O-heptosyltransferase, and may be glycosylated in regions with this repeat.


Pssm-ID: 275208 [Multi-domain]  Cd Length: 38  Bit Score: 32.82  E-value: 8.96e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1014558024 140 ANNTTIN-GGRQTIHDGGISTGTIIDS-GNQDVYTGG 174
Cdd:TIGR04415   2 ASGTTVNsGGTQTVSSGGTATGTTVNSgGTQTVSSGG 38
 
Name Accession Description Interval E-value
auto_AIDA-I NF033176
autotransporter adhesin AIDA-I;
89-184 1.04e-08

autotransporter adhesin AIDA-I;


Pssm-ID: 380183 [Multi-domain]  Cd Length: 1287  Bit Score: 54.28  E-value: 1.04e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1014558024   89 GSQRVDERGTTNNTHIINHGQQNV-HGGVSNGSLIESGGYQDVGSHnnfvGQANNTTIN-GGRQTIHDGGISTGTIIDSG 166
Cdd:NF033176   385 GTQSVLSGGYASGTLINNSGRENVsNGGSAYNTIINAGGNQYIYSN----GEASGTTVNtSGFQRVNSGGTATGTKLSGG 460

                           90
                   ....*....|....*...
gi 1014558024  167 NQDVYTGGISNGTTIKGG 184
Cdd:NF033176   461 NQNVSSGGKAIAAEVYSG 478
auto_AIDA-I NF033176
autotransporter adhesin AIDA-I;
89-184 3.89e-08

autotransporter adhesin AIDA-I;


Pssm-ID: 380183 [Multi-domain]  Cd Length: 1287  Bit Score: 52.35  E-value: 3.89e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1014558024   89 GSQRVDERGTTNNTHIINHGQQNV-HGGVSNGSLIESGGYQdvgsHNNFVGQANNTTIN-GGRQTIHDGGISTGTIIDSG 166
Cdd:NF033176   179 GQQRVSSGGVASNTTINSSGTQNIlSGGSTVSTHISSGGNQ----YISAGGNASATVVSsGGFQRVSSGGTATGTVLSGG 254

                           90
                   ....*....|....*...
gi 1014558024  167 NQDVYTGGISNGTTIKGG 184
Cdd:NF033176   255 TQNVSSGGSAISTSVYSS 272
auto_AIDA-I NF033176
autotransporter adhesin AIDA-I;
89-181 4.48e-08

autotransporter adhesin AIDA-I;


Pssm-ID: 380183 [Multi-domain]  Cd Length: 1287  Bit Score: 52.35  E-value: 4.48e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1014558024   89 GSQRVDERGTTNNTHIINHGQQNV-HGGVSNGSLIESGGYQDV-------------GSHNNF-VGQANNTTI-NGGRQTI 152
Cdd:NF033176    85 GIQNVNNGGKTTSTTVNSSGAQNVgNSGTAISTIVNSGGVQRVssggvtsatslsgGAQNIYnLGHASNTVIfNGGNQTI 164

                           90       100       110
                   ....*....|....*....|....*....|
gi 1014558024  153 HDGGISTGTIIDSGNQD-VYTGGISNGTTI 181
Cdd:NF033176   165 FSGGISDDTNISSGGQQrVSSGGVASNTTI 194
auto_AIDA-I NF033176
autotransporter adhesin AIDA-I;
80-184 2.12e-06

autotransporter adhesin AIDA-I;


Pssm-ID: 380183 [Multi-domain]  Cd Length: 1287  Bit Score: 47.35  E-value: 2.12e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1014558024   80 GVVNDETVDG--SQRVDERGTTNNTHIINHGQQNV-HGGVSNGSLIESGGYQDVGSHNNFV---------------GQAN 141
Cdd:NF033176    55 GVVSGGVVSSgeTQVVYSNGQTSNATVNSGGIQNVnNGGKTTSTTVNSSGAQNVGNSGTAIstivnsggvqrvssgGVTS 134

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1014558024  142 NTTINGGRQTIHDGGISTGTII-DSGNQDVYTGGISNGTTIKGG 184
Cdd:NF033176   135 ATSLSGGAQNIYNLGHASNTVIfNGGNQTIFSGGISDDTNISSG 178
auto_AIDA-I NF033176
autotransporter adhesin AIDA-I;
80-187 3.71e-06

autotransporter adhesin AIDA-I;


Pssm-ID: 380183 [Multi-domain]  Cd Length: 1287  Bit Score: 46.58  E-value: 3.71e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1014558024   80 GVVNDETVD--GSQRVDERGTTNNTHIINHGQQNVH-GGVSNGSLIESGGYQDVGSHNNFV--------------GQANN 142
Cdd:NF033176   187 GVASNTTINssGTQNILSGGSTVSTHISSGGNQYISaGGNASATVVSSGGFQRVSSGGTATgtvlsggtqnvssgGSAIS 266

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1014558024  143 TTI-NGGRQTIHDGGISTGTIIDS-GNQDVYTGGISNGTTIKGGNSH 187
Cdd:NF033176   267 TSVySSGVQTVYAGATVTDTTVNSgGKQNISSGGIVSGTIVNSSGTQ 313
auto_AIDA-I NF033176
autotransporter adhesin AIDA-I;
89-196 7.67e-06

autotransporter adhesin AIDA-I;


Pssm-ID: 380183 [Multi-domain]  Cd Length: 1287  Bit Score: 45.81  E-value: 7.67e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1014558024   89 GSQRVDERGTTNNThIINHGQQNVH-GGVSNGSLIESGGYQDVGSHNNfvgqANNTTIN-GGRQTIHDGGISTGTIID-S 165
Cdd:NF033176   236 GFQRVSSGGTATGT-VLSGGTQNVSsGGSAISTSVYSSGVQTVYAGAT----VTDTTVNsGGKQNISSGGIVSGTIVNsS 310

                           90       100       110
                   ....*....|....*....|....*....|.
gi 1014558024  166 GNQDVYTGGISNGTTIKGGNSHCSGTLNLAT 196
Cdd:NF033176   311 GTQNIYSGGSALSANIKGSQIVNSDGTAINT 341
AIDA pfam16168
Adhesin of bacterial autotransporter system, probable stalk; The AIDA repeat is found on ...
 108-167 2.12e-05

Adhesin of bacterial autotransporter system, probable stalk; The AIDA repeat is found on bacterial autotransporter proteins. As the repeat is short and occurs multiple times, it is likely to be the region of the transporter that acts as the stalk between the beta-barrel inserted into the membrane and the N-terminal head domain.


Pssm-ID: 406554 [Multi-domain]  Cd Length: 57  Bit Score: 40.78  E-value: 2.12e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1014558024 108 GQQNVHGGVSNGSLIESGGYQDVGSHnnfvGQANNTTIN-GGRQTIHDGGISTGTIIDSGN 167
Cdd:pfam16168   1 GAFSISGGVADNVLLENGGSLTVVAG----TSATDTTVDkGGTLDVQSGGTATGTVVNNGG 57
auto_AIDA-I NF033176
autotransporter adhesin AIDA-I;
89-184 3.55e-05

autotransporter adhesin AIDA-I;


Pssm-ID: 380183 [Multi-domain]  Cd Length: 1287  Bit Score: 43.88  E-value: 3.55e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1014558024   89 GSQRVDERGTTNNTHIINHGQQNVHGGVSNGSLIESGGYQDVgshnnFVGQANNTTING-GRQTIHDGGISTGTIIDS-G 166
Cdd:NF033176   479 GKQTVYAGGEASGTQIFDGGVVNVSGGSVSGASVNLNGRLNV-----FAGNVTGTILNQeGRQYIYSGASATSTVANNeG 553

                           90
                   ....*....|....*...
gi 1014558024  167 NQDVYTGGISNGTTIKGG 184
Cdd:NF033176   554 REYVLSGGVADGTVLNSG 571
auto_AIDA-I NF033176
autotransporter adhesin AIDA-I;
89-184 6.02e-05

autotransporter adhesin AIDA-I;


Pssm-ID: 380183 [Multi-domain]  Cd Length: 1287  Bit Score: 43.11  E-value: 6.02e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1014558024   89 GSQRVDERGTTNNTHIINHGQQNVH-GGVSNGSLIESGGYQDVGSHN-------------NFVGQANNTTIN-GGRQTIH 153
Cdd:NF033176   273 GVQTVYAGATVTDTTVNSGGKQNISsGGIVSGTIVNSSGTQNIYSGGsalsanikgsqivNSDGTAINTLVNdGGYQHIR 352

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1014558024  154 DGGISTGTIID-SGNQDVYTGGISNGTTIKGG 184
Cdd:NF033176   353 NGGVASGTIINqSGRVNISSGGYAESTIINSG 384
auto_AIDA-I NF033176
autotransporter adhesin AIDA-I;
110-184 1.15e-04

autotransporter adhesin AIDA-I;


Pssm-ID: 380183 [Multi-domain]  Cd Length: 1287  Bit Score: 42.34  E-value: 1.15e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1014558024  110 QNVHGGVSNGSLIESGGYQDVGSHnnfvGQANNTTIN-GGRQTIHDGGISTGTIID-SGNQDVYTGGISNGTTIKGG 184
Cdd:NF033176    50 QNISSGVVSGGVVSSGETQVVYSN----GQTSNATVNsGGIQNVNNGGKTTSTTVNsSGAQNVGNSGTAISTIVNSG 122
auto_AIDA-I NF033176
autotransporter adhesin AIDA-I;
89-194 5.77e-04

autotransporter adhesin AIDA-I;


Pssm-ID: 380183 [Multi-domain]  Cd Length: 1287  Bit Score: 40.03  E-value: 5.77e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1014558024   89 GSQRVDERGTTNNTHIINHGQQNVH-GGVSNGSLIESGGYQDVGS-----HNNFVGQANNTT----------INGGRQTI 152
Cdd:NF033176   404 GRENVSNGGSAYNTIINAGGNQYIYsNGEASGTTVNTSGFQRVNSggtatGTKLSGGNQNVSsggkaiaaevYSGGKQTV 483

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1014558024  153 HDGGISTGTIIdsgnqdvYTGGISN--GTTIKGGNSHCSGTLNL 194
Cdd:NF033176   484 YAGGEASGTQI-------FDGGVVNvsGGSVSGASVNLNGRLNV 520
auto_AIDA-I NF033176
autotransporter adhesin AIDA-I;
71-184 6.10e-04

autotransporter adhesin AIDA-I;


Pssm-ID: 380183 [Multi-domain]  Cd Length: 1287  Bit Score: 40.03  E-value: 6.10e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1014558024   71 MTAFTPDVIGVVNDEtvDGSQRVDERGTTNNTHIINHGQQNV-HGGVSNGSLIESGGYQDVGSHnnfvGQANNTTINGGr 149
Cdd:NF033176   518 LNVFAGNVTGTILNQ--EGRQYIYSGASATSTVANNEGREYVlSGGVADGTVLNSGGLQAVSSG----GSASATVINEG- 590

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 1014558024  150 qtihdggistgtiidsGNQDVYTGGISNGTTIKGG 184
Cdd:NF033176   591 ----------------GSQFVYEGGNVTGTVIKNG 609
AIDA pfam16168
Adhesin of bacterial autotransporter system, probable stalk; The AIDA repeat is found on ...
 138-185 2.74e-03

Adhesin of bacterial autotransporter system, probable stalk; The AIDA repeat is found on bacterial autotransporter proteins. As the repeat is short and occurs multiple times, it is likely to be the region of the transporter that acts as the stalk between the beta-barrel inserted into the membrane and the N-terminal head domain.


Pssm-ID: 406554 [Multi-domain]  Cd Length: 57  Bit Score: 35.00  E-value: 2.74e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1014558024 138 GQANNTTI-NGGRQTIHDGGISTGTIIDS-GNQDVYTGGISNGTTIKGGN 185
Cdd:pfam16168   8 GVADNVLLeNGGSLTVVAGTSATDTTVDKgGTLDVQSGGTATGTVVNNGG 57
O_hepto_targRPT TIGR04415
autotransporter passenger strand-loop-strand repeat; This model describes two tandem copies of ...
 140-174 8.96e-03

autotransporter passenger strand-loop-strand repeat; This model describes two tandem copies of a strand-loop-strand repeat that occurs often in type V secretion system (T5SS). These repeats usually occur in the passenger domain of the classical monomeric autotransporter. Proteins with this repeat often are encoded next to a member of family TIGR04414, the Aah/TibC family O-heptosyltransferase, and may be glycosylated in regions with this repeat.


Pssm-ID: 275208 [Multi-domain]  Cd Length: 38  Bit Score: 32.82  E-value: 8.96e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1014558024 140 ANNTTIN-GGRQTIHDGGISTGTIIDS-GNQDVYTGG 174
Cdd:TIGR04415   2 ASGTTVNsGGTQTVSSGGTATGTTVNSgGTQTVSSGG 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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