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Conserved domains on  [gi|1003307600|gb|KXW53229|]
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ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PDDEXK_2 super family cl39184
PD-(D/E)XK nuclease family transposase; Members of this family belong to the PD-(D/E)XK ...
 12-92 4.17e-07

PD-(D/E)XK nuclease family transposase; Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.


The actual alignment was detected with superfamily member pfam12784:

Pssm-ID: 432783  Cd Length: 228  Bit Score: 46.50  E-value: 4.17e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003307600  12 NDLVAKKIFS---NPEITCQFIRDMLDLPAKNVTILEGSNihvllsmPYSVQDFYTN----IDVLAELDNGTQVIIEIQV 84
Cdd:pfam12784   2 NDYAFKRLFGteeNKDILISFLNAILKGEKGRIADIEYLN-------NELLKEYEEDkksiLDIKCKTENGEIINIEMQK 74


                  ....*...
gi 1003307600  85 HHQNFFIN 92
Cdd:pfam12784  75 SWQYNFKE 82
 
Name Accession Description Interval E-value
PDDEXK_2 pfam12784
PD-(D/E)XK nuclease family transposase; Members of this family belong to the PD-(D/E)XK ...
 12-92 4.17e-07

PD-(D/E)XK nuclease family transposase; Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.


Pssm-ID: 432783  Cd Length: 228  Bit Score: 46.50  E-value: 4.17e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003307600  12 NDLVAKKIFS---NPEITCQFIRDMLDLPAKNVTILEGSNihvllsmPYSVQDFYTN----IDVLAELDNGTQVIIEIQV 84
Cdd:pfam12784   2 NDYAFKRLFGteeNKDILISFLNAILKGEKGRIADIEYLN-------NELLKEYEEDkksiLDIKCKTENGEIINIEMQK 74


                  ....*...
gi 1003307600  85 HHQNFFIN 92
Cdd:pfam12784  75 SWQYNFKE 82
 
Name Accession Description Interval E-value
PDDEXK_2 pfam12784
PD-(D/E)XK nuclease family transposase; Members of this family belong to the PD-(D/E)XK ...
 12-92 4.17e-07

PD-(D/E)XK nuclease family transposase; Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.


Pssm-ID: 432783  Cd Length: 228  Bit Score: 46.50  E-value: 4.17e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003307600  12 NDLVAKKIFS---NPEITCQFIRDMLDLPAKNVTILEGSNihvllsmPYSVQDFYTN----IDVLAELDNGTQVIIEIQV 84
Cdd:pfam12784   2 NDYAFKRLFGteeNKDILISFLNAILKGEKGRIADIEYLN-------NELLKEYEEDkksiLDIKCKTENGEIINIEMQK 74


                  ....*...
gi 1003307600  85 HHQNFFIN 92
Cdd:pfam12784  75 SWQYNFKE 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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