|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10782 |
PRK10782 |
D-methionine ABC transporter permease MetI; |
1-217 |
2.24e-138 |
|
D-methionine ABC transporter permease MetI;
Pssm-ID: 182726 Cd Length: 217 Bit Score: 386.01 E-value: 2.24e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 1 MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIENAKLYRTLSALVNIFRSIPFIILLVWMIPFTR 80
Cdd:PRK10782 1 MSEAMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIILLVWMIPFTR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160
Cdd:PRK10782 81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 978038388 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVVLVYLIQFSGDRIVRAVTHK 217
Cdd:PRK10782 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTHK 217
|
|
| MetP |
COG2011 |
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ... |
1-217 |
3.51e-92 |
|
ABC-type methionine transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 441614 Cd Length: 220 Bit Score: 269.23 E-value: 3.51e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 1 MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIENAKLYRTLSALVNIFRSIPFIILLVWMIPFTR 80
Cdd:COG2011 4 MWSELWPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPNPVLYRVLGVIVNIFRSIPFIILLVALIPLTR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160
Cdd:COG2011 84 LIVGTSIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGY 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 978038388 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVVLVYLIQFSGDRIVRAVTHK 217
Cdd:COG2011 164 SAMAGAVGGGGLGDLAIRYGYQRFDTDVMLVTVVILIVLVQIIQFLGDRLARRLDHR 220
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
14-161 |
1.94e-14 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 68.84 E-value: 1.94e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 14 WETLAMTFVSGFFGFVIGLPVGVLLYVTRPgqiienaKLYRTLSALVNIFRSIPFIILLVWMIPFTRVIVGTSIGLQ--- 90
Cdd:cd06261 2 LNTLLLALIATLLALVLGLLLGIILARKRG-------KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGlgl 74
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 978038388 91 AAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYS 161
Cdd:cd06261 75 PALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEF 145
|
|
| PhnE |
TIGR01097 |
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ... |
9-147 |
1.48e-10 |
|
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]
Pssm-ID: 273441 [Multi-domain] Cd Length: 250 Bit Score: 59.09 E-value: 1.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 9 LVRGVWETLAMTFVSGFFGFVIGLPVGVLlyvtRPGQIIENAKLYRTLSALVNIFRSIPfiiLLVWMIPFTrVIVGtsIG 88
Cdd:TIGR01097 56 ILKALLETLAMAILGTVLAAVLAVPLALL----AARNITPSPWLYGLARLLLNFLRAIP---ELVWALIFV-AAVG--LG 125
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 978038388 89 LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLV 147
Cdd:TIGR01097 126 PFAGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFL 184
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
49-214 |
1.45e-09 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 55.38 E-value: 1.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 49 NAKLYRTLSALVNIFRSIP-FIILLVWMIPFTRVIVGTSIglQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMG 127
Cdd:pfam00528 13 GRRLDRLLRPLIDLLQALPsFVLAILLVVIAILSILGHGI--LPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 128 ATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVVLVYLIQFSG 207
Cdd:pfam00528 91 ASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLV 170
|
....*..
gi 978038388 208 DRIVRAV 214
Cdd:pfam00528 171 DILQRLL 177
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10782 |
PRK10782 |
D-methionine ABC transporter permease MetI; |
1-217 |
2.24e-138 |
|
D-methionine ABC transporter permease MetI;
Pssm-ID: 182726 Cd Length: 217 Bit Score: 386.01 E-value: 2.24e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 1 MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIENAKLYRTLSALVNIFRSIPFIILLVWMIPFTR 80
Cdd:PRK10782 1 MSEAMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIILLVWMIPFTR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160
Cdd:PRK10782 81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 978038388 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVVLVYLIQFSGDRIVRAVTHK 217
Cdd:PRK10782 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTHK 217
|
|
| MetP |
COG2011 |
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ... |
1-217 |
3.51e-92 |
|
ABC-type methionine transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 441614 Cd Length: 220 Bit Score: 269.23 E-value: 3.51e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 1 MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIENAKLYRTLSALVNIFRSIPFIILLVWMIPFTR 80
Cdd:COG2011 4 MWSELWPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPNPVLYRVLGVIVNIFRSIPFIILLVALIPLTR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160
Cdd:COG2011 84 LIVGTSIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGY 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 978038388 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVVLVYLIQFSGDRIVRAVTHK 217
Cdd:COG2011 164 SAMAGAVGGGGLGDLAIRYGYQRFDTDVMLVTVVILIVLVQIIQFLGDRLARRLDHR 220
|
|
| OpuBB |
COG1174 |
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ... |
13-153 |
1.61e-16 |
|
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440787 [Multi-domain] Cd Length: 212 Bit Score: 74.71 E-value: 1.61e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 13 VWETLAMTFVSGFFGFVIGLPVGVLLYVTRpgqiienaKLYRTLSALVNIFRSIPFIILLVWMIPFTrvivgtSIGLQAA 92
Cdd:COG1174 20 LLEHLLLVLLALLIALLIAVPLGILITRRR--------RLAGLVLGVANILQTIPSLALLALLIPLL------GIGPAPA 85
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 978038388 93 IVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALP----GLVNAATIT 153
Cdd:COG1174 86 IIALVLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPvilaGIRTAAVQN 150
|
|
| HisM |
COG0765 |
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ... |
8-158 |
3.05e-15 |
|
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440528 [Multi-domain] Cd Length: 218 Bit Score: 71.26 E-value: 3.05e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 8 LLVRGVWETLAMTFVSGFFGFVIGLPVGVllyvtrpGQIIENAKLYRTLSALVNIFRSIPFIILLVW---MIPFtrviVG 84
Cdd:COG0765 14 LLLEGLLVTLLLTVLAIVLGLVLGLLLAL-------ARLSPNPVLRWLATAYVEFFRGTPLLVQLFFiyfGLPL----LG 82
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 978038388 85 TSIG-LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEA----LPGLVNaatiTLITLV 158
Cdd:COG0765 83 IDLSpFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQAlriiLPPLGN----EFISLL 157
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
14-161 |
1.94e-14 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 68.84 E-value: 1.94e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 14 WETLAMTFVSGFFGFVIGLPVGVLLYVTRPgqiienaKLYRTLSALVNIFRSIPFIILLVWMIPFTRVIVGTSIGLQ--- 90
Cdd:cd06261 2 LNTLLLALIATLLALVLGLLLGIILARKRG-------KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGlgl 74
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 978038388 91 AAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYS 161
Cdd:cd06261 75 PALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEF 145
|
|
| TauC |
COG0600 |
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ... |
9-158 |
1.39e-13 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440365 [Multi-domain] Cd Length: 254 Bit Score: 67.48 E-value: 1.39e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 9 LVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPgqiienakLYRTLSALVNIFRSIPFIILlvwmIPFTRVIVGtsIG 88
Cdd:COG0600 59 LWEHLLASLLRVLLGFALAALLGVPLGLLLGLSRL--------LRRLLDPLLVFLRPIPPLAL----APLLILWFG--IG 124
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 978038388 89 LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALP----GLVNAATITLITLV 158
Cdd:COG0600 125 EASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPyiftGLRIALGLAWIGLV 198
|
|
| PstC |
COG0573 |
ABC-type phosphate transport system, permease component [Inorganic ion transport and ... |
12-150 |
6.13e-13 |
|
ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440338 [Multi-domain] Cd Length: 303 Bit Score: 66.27 E-value: 6.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 12 GVWETLAMTFVSGFFGFVIGLPVGVL--LYVTRpgqiIENAKLYRTLSALVNIFRSIPFIIL----LVWMIPFTRVIV-- 83
Cdd:COG0573 74 GILPLIVGTLLVSLIALLIAVPLGLGiaIFLSE----YAPPRLRRILKPAIELLAGIPSVVYgfwgLFVLVPLLRDLFpw 149
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 978038388 84 -GTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAA 150
Cdd:COG0573 150 pPSGFSLLTAGIVLAIMILPTITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAV 217
|
|
| PhnE |
COG3639 |
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ... |
6-148 |
1.18e-12 |
|
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 442856 [Multi-domain] Cd Length: 244 Bit Score: 64.72 E-value: 1.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 6 MWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLlyVTRPgqIIENAKLYRTLSALVNIFRSIPfiiLLVWMIPFTRvIVGt 85
Cdd:COG3639 46 LPDLLSALLETLAIALLGTLLGAVLALPLAFL--AARN--LAPNPWVRLLARRLLNVLRAIP---ELVWALIFVA-AVG- 116
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 978038388 86 sIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVN 148
Cdd:COG3639 117 -LGPFAGVLALAIHTIGFLGKLFAEAIEEIDPGPVEALRATGASRLQVIRYGVLPQVLPQFLS 178
|
|
| PhnE |
TIGR01097 |
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ... |
9-147 |
1.48e-10 |
|
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]
Pssm-ID: 273441 [Multi-domain] Cd Length: 250 Bit Score: 59.09 E-value: 1.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 9 LVRGVWETLAMTFVSGFFGFVIGLPVGVLlyvtRPGQIIENAKLYRTLSALVNIFRSIPfiiLLVWMIPFTrVIVGtsIG 88
Cdd:TIGR01097 56 ILKALLETLAMAILGTVLAAVLAVPLALL----AARNITPSPWLYGLARLLLNFLRAIP---ELVWALIFV-AAVG--LG 125
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 978038388 89 LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLV 147
Cdd:TIGR01097 126 PFAGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFL 184
|
|
| PstA |
COG0581 |
ABC-type phosphate transport system, permease component [Inorganic ion transport and ... |
16-154 |
1.60e-10 |
|
ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440346 [Multi-domain] Cd Length: 259 Bit Score: 58.89 E-value: 1.60e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 16 TLAMTFVSGFFGFVIGLPVGVLLYVTRPGqiienAKLYRTLSALVNIFRSIPFII-----LLVWMIPFtrvivGTSIGLQ 90
Cdd:COG0581 46 TLLLVLLATLIAVPLGVLAAIYLAEYARG-----GRLARLIRFAIDVLAGVPSIVyglfgYALFVLTL-----GLGFSLL 115
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 978038388 91 AAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITL 154
Cdd:COG0581 116 AGALALALLMLPVVIRTTEEALRLVPNSLREASYALGATKWQTIRKVVLPAALPGILTGVILAI 179
|
|
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
9-156 |
1.26e-09 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 56.66 E-value: 1.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 9 LVRGVWETLAMTFVSGFFGFVIGLPVGVLL-YVtrpGQIIENAklyrtLSALVNIFRSIPFIILLVWMIpftrVIVGTSI 87
Cdd:COG1173 74 LLYGARISLLVGLLAVLIALVIGVLLGLLAgYF---GGWVDAV-----LMRLVDVLLAFPSLLLAIALV----AVLGPGL 141
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 88 GLqaAIVPLTVGAAPFIARMVENALLEIPT-GLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLIT 156
Cdd:COG1173 142 LN--VILALGLTGWPGYARLVRAQVLSLRErEYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIAS 209
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
49-214 |
1.45e-09 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 55.38 E-value: 1.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 49 NAKLYRTLSALVNIFRSIP-FIILLVWMIPFTRVIVGTSIglQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMG 127
Cdd:pfam00528 13 GRRLDRLLRPLIDLLQALPsFVLAILLVVIAILSILGHGI--LPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 128 ATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVVLVYLIQFSG 207
Cdd:pfam00528 91 ASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLV 170
|
....*..
gi 978038388 208 DRIVRAV 214
Cdd:pfam00528 171 DILQRLL 177
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
9-155 |
7.40e-09 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 54.78 E-value: 7.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 9 LVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTR-PGQiienaKLYRTLSALVniFRSIPFIILLVWMI---------PF 78
Cdd:COG1178 52 LWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDfPGR-----RLLRWLLLLP--LALPPYVVALAWIAlfgpngllnTL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 79 TRVIVGTSI----GLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITL 154
Cdd:COG1178 125 LRALFGLEPpdiyGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVF 204
|
.
gi 978038388 155 I 155
Cdd:COG1178 205 L 205
|
|
| phosphate_pstC |
TIGR02138 |
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ... |
20-154 |
1.78e-08 |
|
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]
Pssm-ID: 273992 [Multi-domain] Cd Length: 295 Bit Score: 53.42 E-value: 1.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 20 TFVSGFFGFVIGLPVGVL--LYVTrpgqIIENAKLYRTLSALVNIFRSIPFIILLVW----MIPFTRVIVGTSIGLQAAI 93
Cdd:TIGR02138 68 TLITSLIALLIAVPVGIGiaIFLS----EIAPKRVRSVLKPVVELLAGIPSVVYGFWglfvLVPFLKPHFQPFLGSNLGL 143
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 978038388 94 VPLTVGAA------------PFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITL 154
Cdd:TIGR02138 144 IPLFGGPIltagivlaimilPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGL 216
|
|
| PotC |
COG1177 |
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ... |
9-156 |
1.42e-07 |
|
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];
Pssm-ID: 440790 [Multi-domain] Cd Length: 262 Bit Score: 50.50 E-value: 1.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 9 LVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPgqiienaKLYRTLSALVNIFRSIPFIILLVWMIPFTrVIVGTSIG 88
Cdd:COG1177 59 LLDALLNSLLIALLSTLLATVLGTPAALALARYRF-------RGRRLLLALLLLPLVVPGIVLGVALLLLF-SALGLSGG 130
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 978038388 89 LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLIT 156
Cdd:COG1177 131 LWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTL 198
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
9-159 |
1.51e-07 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 50.93 E-value: 1.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 9 LVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRpgqiienAKLYRTLSALVNIFRSIPFIIL-LVWMIPFTRVIVGTSI 87
Cdd:COG1178 336 LLRALLNSLLLALLAALLAVLLALLLAYLVRRRR-------GRLARLLDRLAMLPYAVPGIVLgLGLLLLFNRPLPLLLY 408
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 978038388 88 GLQAAIV-PLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVG 159
Cdd:COG1178 409 GTLAILVlAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMK 481
|
|
| PotB |
COG1176 |
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ... |
102-159 |
8.54e-07 |
|
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];
Pssm-ID: 440789 [Multi-domain] Cd Length: 287 Bit Score: 48.22 E-value: 8.54e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 978038388 102 PFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVG 159
Cdd:COG1176 167 PFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALG 224
|
|
| UgpE |
COG0395 |
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ... |
68-160 |
8.63e-07 |
|
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440164 [Multi-domain] Cd Length: 282 Bit Score: 48.17 E-value: 8.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 68 FIILLVWMIPFTRVIVGT-----SIGL----QAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVL 138
Cdd:COG0395 114 LLILATLMIPGQVLLIPLyllfrQLGLlntyWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIV 193
|
90 100
....*....|....*....|..
gi 978038388 139 LPEALPGLvnaATITLITLVGY 160
Cdd:COG0395 194 LPLSKPAL---ATVAIFTFIGA 212
|
|
| PRK15050 |
PRK15050 |
2-aminoethylphosphonate transport system permease PhnU; Provisional |
101-155 |
9.57e-07 |
|
2-aminoethylphosphonate transport system permease PhnU; Provisional
Pssm-ID: 237888 [Multi-domain] Cd Length: 296 Bit Score: 48.08 E-value: 9.57e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 978038388 101 APFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLI 155
Cdd:PRK15050 173 TPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLL 227
|
|
| glnP |
PRK09494 |
glutamine ABC transporter permease protein; Reviewed |
15-143 |
3.43e-06 |
|
glutamine ABC transporter permease protein; Reviewed
Pssm-ID: 181907 [Multi-domain] Cd Length: 219 Bit Score: 46.20 E-value: 3.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 15 ETLAMTFVSGFFGFVIGLPVGVLLYVTRP--GQIIENAKLyrtlsALVNIFRSIPfIILLVWMIPFTRVIVGTSI---GL 89
Cdd:PRK09494 17 EGAKMTLWISVLGLAGGLVIGLLAGFARAygGWIANHIAL-----VFIELIRGTP-IVVQVMFIYFALPMAFNDLridPF 90
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 978038388 90 QAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEAL 143
Cdd:PRK09494 91 TAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLAL 144
|
|
| PRK10952 |
PRK10952 |
proline/glycine betaine ABC transporter permease ProW; |
16-155 |
4.86e-06 |
|
proline/glycine betaine ABC transporter permease ProW;
Pssm-ID: 236805 Cd Length: 355 Bit Score: 46.24 E-value: 4.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 16 TLAMTFVSGFFGFVIGLPVGV-LLYVTRPGQIIEnaklyrtlsALVNIFRSIPFIILLVwmipftRVIVGTSIGLQAAIV 94
Cdd:PRK10952 149 TLALVLTALLFCIVIGLPLGIwLARSPRAAKIIR---------PLLDAMQTTPAFVYLV------PIVMLFGIGNVPGVV 213
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 978038388 95 PLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLI 155
Cdd:PRK10952 214 VTIIFALPPIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLM 274
|
|
| PRK15107 |
PRK15107 |
glutamate/aspartate ABC transporter permease GltK; |
4-147 |
7.18e-06 |
|
glutamate/aspartate ABC transporter permease GltK;
Pssm-ID: 185062 [Multi-domain] Cd Length: 224 Bit Score: 45.21 E-value: 7.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 4 PMMWLLVRGVWETLAMTFVSgffgFVIGLPVGVLLYVTRPGQIIENAKLYRtlsALVNIFRSIPFIILLVW---MIP-FT 79
Cdd:PRK15107 11 PSLPYLLDGLVITLKITVTA----VVIGILWGTILAVMRLSSFKPVAWFAK---AYVNVFRSIPLVMVLLWfylIVPgFL 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 978038388 80 RVIVG----TSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLV 147
Cdd:PRK15107 84 QNVLGlspkTDIRLISAMVAFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMV 155
|
|
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
8-159 |
2.20e-05 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 44.29 E-value: 2.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 8 LLVRGVWETLAMTFVSGFFGFVIGLPVGVLLyVTRPGQIIEnaklyRTLSALVNIFRSIP---FIILLVW---------- 74
Cdd:COG0601 90 LIAERLPVTLELALLALLLALLIGIPLGILA-ALRRGSWLD-----RLITVLALLGISIPsfwLGLLLILlfavklgwlp 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 75 ---MIPFTRVIVGtsiGLQAAIVP---LTVGAAPFIARMVENALLEIptgL----IEASRAMGATPMQIVRKVLLPEALP 144
Cdd:COG0601 164 vsgRVSPWEDFLD---ALRHLILPaltLALGSLAGIARLTRSSMLEV---LgqdyVRTARAKGLSERRVLLRHALRNALI 237
|
170
....*....|....*
gi 978038388 145 GLVNAATITLITLVG 159
Cdd:COG0601 238 PVVTVLGLQLGGLLG 252
|
|
| PRK10971 |
PRK10971 |
sulfate/thiosulfate ABC transporter permease CysT; |
74-159 |
3.45e-04 |
|
sulfate/thiosulfate ABC transporter permease CysT;
Pssm-ID: 182873 Cd Length: 277 Bit Score: 40.51 E-value: 3.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 74 WMIPFTRVIVGTSIGLQAAivpLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATIT 153
Cdd:PRK10971 128 WLAKFDIKVTYTWLGIAVA---MAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALS 204
|
....*.
gi 978038388 154 LITLVG 159
Cdd:PRK10971 205 FTRSLG 210
|
|
| HEQRo_perm_3TM |
TIGR01726 |
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This ... |
6-105 |
2.05e-03 |
|
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This model represents one of several classes of multiple membrane spanning regions found immediately N-terminal to the domain described by pfam00528, binding-protein-dependent transport systems inner membrane component. The region covered by this model generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130787 [Multi-domain] Cd Length: 99 Bit Score: 36.36 E-value: 2.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 6 MWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPgqiienaKLYRTLSALVNIFRSIPFIILLVWmIPFTRVIVGT 85
Cdd:TIGR01726 2 LPFLLKGLLLTLLLSVLSILLGLVLGLLLALLRLSGNR-------PLRWIATVYVELFRGTPLLVQLFF-IYFGLPLIGI 73
|
90 100
....*....|....*....|.
gi 978038388 86 SIG-LQAAIVPLTVGAAPFIA 105
Cdd:TIGR01726 74 RLSpLTAAVIALTLFYGAYLA 94
|
|
| ssuC |
PRK11365 |
aliphatic sulfonate ABC transporter permease SsuC; |
13-147 |
4.02e-03 |
|
aliphatic sulfonate ABC transporter permease SsuC;
Pssm-ID: 183100 Cd Length: 263 Bit Score: 37.22 E-value: 4.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 978038388 13 VWETLAMTFVSGFFGFVIG----LPVGVLLYVTRPGQiienaklyRTLSALVNIFRSIPFIILlvwmIPFtrVIVGTSIG 88
Cdd:PRK11365 58 LWQHLAISSWRALIGFSIGgslgLILGLISGLSRWGE--------RLLDTSIQMLRNVPHLAL----IPL--VILWFGID 123
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 978038388 89 LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLV 147
Cdd:PRK11365 124 ESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIM 182
|
|
| cysT |
CHL00187 |
sulfate transport protein; Provisional |
85-153 |
4.04e-03 |
|
sulfate transport protein; Provisional
Pssm-ID: 214388 [Multi-domain] Cd Length: 237 Bit Score: 37.30 E-value: 4.04e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 978038388 85 TSIGLQAAIVPLTVGAA------PFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATIT 153
Cdd:CHL00187 127 SHLGIQIVFTKLGVLLAmifvsfPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALT 201
|
|
| |
