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Conserved domains on  [gi|947050909|gb|KRH00438|]
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hypothetical protein GLYMA_18G213500v4 [Glycine max]

Protein Classification

TMEM14 family protein( domain architecture ID 10508392)

TMEM14 family protein contains four hydrophobic alpha-helical regions, three of which are membrane-spanning, similar to Arabidopsis thaliana fatty acid export proteins

CATH:  1.10.10.1740
Gene Ontology:  GO:0016020

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Tmemb_14 pfam03647
Transmembrane proteins 14C; This family of short membrane proteins are as yet uncharacterized.
 201-292 1.11e-16

Transmembrane proteins 14C; This family of short membrane proteins are as yet uncharacterized.


:

Pssm-ID: 461004  Cd Length: 89  Bit Score: 73.69  E-value: 1.11e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 947050909  201 VGVPYGLMLSLGGFLSFMVTGNTAAIRFGVILGGVLLALSILSLksyKKGRTSPLALKGQAAIASILFLREISSIGKGSS 280
Cdd:pfam03647   1 LGIPYGALLAVGGIMGYARAGSVPSLIAGLGFGALLLLGGYLSL---NAPYGLELALGASAVLAGVMGPRFIKTRKFMPA 77

                          90
                  ....*....|..
gi 947050909  281 YFTALISGAVVA 292
Cdd:pfam03647  78 GLLALLSLLMLA 89
 
Name Accession Description Interval E-value
Tmemb_14 pfam03647
Transmembrane proteins 14C; This family of short membrane proteins are as yet uncharacterized.
 201-292 1.11e-16

Transmembrane proteins 14C; This family of short membrane proteins are as yet uncharacterized.


Pssm-ID: 461004  Cd Length: 89  Bit Score: 73.69  E-value: 1.11e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 947050909  201 VGVPYGLMLSLGGFLSFMVTGNTAAIRFGVILGGVLLALSILSLksyKKGRTSPLALKGQAAIASILFLREISSIGKGSS 280
Cdd:pfam03647   1 LGIPYGALLAVGGIMGYARAGSVPSLIAGLGFGALLLLGGYLSL---NAPYGLELALGASAVLAGVMGPRFIKTRKFMPA 77

                          90
                  ....*....|..
gi 947050909  281 YFTALISGAVVA 292
Cdd:pfam03647  78 GLLALLSLLMLA 89
 
Name Accession Description Interval E-value
Tmemb_14 pfam03647
Transmembrane proteins 14C; This family of short membrane proteins are as yet uncharacterized.
 201-292 1.11e-16

Transmembrane proteins 14C; This family of short membrane proteins are as yet uncharacterized.


Pssm-ID: 461004  Cd Length: 89  Bit Score: 73.69  E-value: 1.11e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 947050909  201 VGVPYGLMLSLGGFLSFMVTGNTAAIRFGVILGGVLLALSILSLksyKKGRTSPLALKGQAAIASILFLREISSIGKGSS 280
Cdd:pfam03647   1 LGIPYGALLAVGGIMGYARAGSVPSLIAGLGFGALLLLGGYLSL---NAPYGLELALGASAVLAGVMGPRFIKTRKFMPA 77

                          90
                  ....*....|..
gi 947050909  281 YFTALISGAVVA 292
Cdd:pfam03647  78 GLLALLSLLMLA 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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