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Conserved domains on  [gi|944077029|gb|KQK12381|]
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hypothetical protein BRADI_1g03340v3 [Brachypodium distachyon]

Protein Classification

TSP9 domain-containing protein( domain architecture ID 10568786)

TSP9 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TSP9 super family cl13012
Thylakoid soluble phosphoprotein TSP9; The plant-specific protein, TSP9 is phosphorylated and ...
 35-94 1.51e-16

Thylakoid soluble phosphoprotein TSP9; The plant-specific protein, TSP9 is phosphorylated and released in response to changing light conditions from the photosynthetic membrane. The protein resembles the characteriztics of transcription/translation regulatory factors. The structure of the protein is predicted to consist of a random coil.


The actual alignment was detected with superfamily member pfam11493:

Pssm-ID: 431909  Cd Length: 79  Bit Score: 68.30  E-value: 1.51e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 944077029   35 TRGQAAPKKQEKGILDFIVGAIVKDEQLLiETDPLLNKVDTPAPSP-----ASGTVSKKKPAADD 94
Cdd:pfam11493   1 TKGPAGGAKEEKSLLDFILGALTKDDQLY-ETDPLLKKVDGKAGGGratrrGGKTSAKKPAAPAK 64
 
Name Accession Description Interval E-value
TSP9 pfam11493
Thylakoid soluble phosphoprotein TSP9; The plant-specific protein, TSP9 is phosphorylated and ...
 35-94 1.51e-16

Thylakoid soluble phosphoprotein TSP9; The plant-specific protein, TSP9 is phosphorylated and released in response to changing light conditions from the photosynthetic membrane. The protein resembles the characteriztics of transcription/translation regulatory factors. The structure of the protein is predicted to consist of a random coil.


Pssm-ID: 431909  Cd Length: 79  Bit Score: 68.30  E-value: 1.51e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 944077029   35 TRGQAAPKKQEKGILDFIVGAIVKDEQLLiETDPLLNKVDTPAPSP-----ASGTVSKKKPAADD 94
Cdd:pfam11493   1 TKGPAGGAKEEKSLLDFILGALTKDDQLY-ETDPLLKKVDGKAGGGratrrGGKTSAKKPAAPAK 64
 
Name Accession Description Interval E-value
TSP9 pfam11493
Thylakoid soluble phosphoprotein TSP9; The plant-specific protein, TSP9 is phosphorylated and ...
 35-94 1.51e-16

Thylakoid soluble phosphoprotein TSP9; The plant-specific protein, TSP9 is phosphorylated and released in response to changing light conditions from the photosynthetic membrane. The protein resembles the characteriztics of transcription/translation regulatory factors. The structure of the protein is predicted to consist of a random coil.


Pssm-ID: 431909  Cd Length: 79  Bit Score: 68.30  E-value: 1.51e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 944077029   35 TRGQAAPKKQEKGILDFIVGAIVKDEQLLiETDPLLNKVDTPAPSP-----ASGTVSKKKPAADD 94
Cdd:pfam11493   1 TKGPAGGAKEEKSLLDFILGALTKDDQLY-ETDPLLKKVDGKAGGGratrrGGKTSAKKPAAPAK 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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