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Conserved domains on  [gi|923245773|gb|KOP96721|]
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hypothetical protein ALC61_13510 [Citrobacter amalonaticus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DDRRRQL_YjdP NF041443
DDRRRQL repeat protein YjdP; Members of this family average 108 amino acids in length, with a ...
 16-105 1.40e-17

DDRRRQL repeat protein YjdP; Members of this family average 108 amino acids in length, with a signal peptide and with a highly charged C-terminal region of typically five tandem 7-mer repeats approximated by DDRRRQL. The family is named for founding member YjdP from Escherichia coli K-12.


:

Pssm-ID: 469333 [Multi-domain]  Cd Length: 102  Bit Score: 71.56  E-value: 1.40e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923245773  16 ATVPAQADIIDDAIGNIQQAINDAYKPDSdsgRDYEDSRDDRWQNEMSDDRRRQYDDRRRQFEDRRRQLDERQRQLDRER 95
Cdd:NF041443  16 TSQLAHADIIDDAIGNIQQAINDAYNPDD---SDDDDDRRYDDDRRRSDDRRRQYDDRRRQLEDRRRQLDDRQRQLDQER 92

                         90
                 ....*....|
gi 923245773  96 RQLEDEESRM 105
Cdd:NF041443  93 RQLEDEERRL 102
 
Name Accession Description Interval E-value
DDRRRQL_YjdP NF041443
DDRRRQL repeat protein YjdP; Members of this family average 108 amino acids in length, with a ...
 16-105 1.40e-17

DDRRRQL repeat protein YjdP; Members of this family average 108 amino acids in length, with a signal peptide and with a highly charged C-terminal region of typically five tandem 7-mer repeats approximated by DDRRRQL. The family is named for founding member YjdP from Escherichia coli K-12.


Pssm-ID: 469333 [Multi-domain]  Cd Length: 102  Bit Score: 71.56  E-value: 1.40e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923245773  16 ATVPAQADIIDDAIGNIQQAINDAYKPDSdsgRDYEDSRDDRWQNEMSDDRRRQYDDRRRQFEDRRRQLDERQRQLDRER 95
Cdd:NF041443  16 TSQLAHADIIDDAIGNIQQAINDAYNPDD---SDDDDDRRYDDDRRRSDDRRRQYDDRRRQLEDRRRQLDDRQRQLDQER 92

                         90
                 ....*....|
gi 923245773  96 RQLEDEESRM 105
Cdd:NF041443  93 RQLEDEERRL 102
 
Name Accession Description Interval E-value
DDRRRQL_YjdP NF041443
DDRRRQL repeat protein YjdP; Members of this family average 108 amino acids in length, with a ...
 16-105 1.40e-17

DDRRRQL repeat protein YjdP; Members of this family average 108 amino acids in length, with a signal peptide and with a highly charged C-terminal region of typically five tandem 7-mer repeats approximated by DDRRRQL. The family is named for founding member YjdP from Escherichia coli K-12.


Pssm-ID: 469333 [Multi-domain]  Cd Length: 102  Bit Score: 71.56  E-value: 1.40e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923245773  16 ATVPAQADIIDDAIGNIQQAINDAYKPDSdsgRDYEDSRDDRWQNEMSDDRRRQYDDRRRQFEDRRRQLDERQRQLDRER 95
Cdd:NF041443  16 TSQLAHADIIDDAIGNIQQAINDAYNPDD---SDDDDDRRYDDDRRRSDDRRRQYDDRRRQLEDRRRQLDDRQRQLDQER 92

                         90
                 ....*....|
gi 923245773  96 RQLEDEESRM 105
Cdd:NF041443  93 RQLEDEERRL 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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