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Conserved domains on  [gi|920693010|gb|KOM36235|]
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hypothetical protein LR48_Vigan02g238500 [Vigna angularis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03218 super family cl33664
maturation of RBCL 1; Provisional
 246-741 2.84e-35

maturation of RBCL 1; Provisional


The actual alignment was detected with superfamily member PLN03218:

Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 144.63  E-value: 2.84e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  246 YNTLIsccRAGSLyEEALDLFEEIKVAG-FTPDVVTYNVLLDVYGKSRRPKEAIEVLKQMELdgflPSVVTYNSLVSAYV 324
Cdd:PLN03218  377 YNRLL---RDGRI-KDCIDLLEDMEKRGlLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCA 448

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  325 RGGLLEDALELKRKMVEKGIKPDVYTYTTLLSGFVKAGKDELAMEVFGEMRYVGCKPNICTFNALIKMYGDRGKfeemer 404
Cdd:PLN03218  449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ------ 522

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  405 vfkeikvckcspdivtwntLLAVFGQNGMdsevsgvfeeMKRAGFVPERDTFNTLISAYGRCGSFDQAMSVYKRM-LEAG 483
Cdd:PLN03218  523 -------------------VAKAFGAYGI----------MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMkAETH 573

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  484 -VSPDLSTYNAVLATLARGGLWEQSEKVLAEMKNGGCKPNEATYSSLLHAYANGREVErmnaLAEEIYSDrikthtvlln 562
Cdd:PLN03218  574 pIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD----FALSIYDD---------- 639

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  563 tlvlvnskvdlveqterafleFRKRGISPDITTMNAMLSIYGRKnRKGSKANEILNYMYESGLTLSLTAYNSLMYGYSRT 642
Cdd:PLN03218  640 ---------------------MKKKGVKPDEVFFSALVDVAGHA-GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  643 KKFQKSEQILREILDKGIEPDVVSYNVVIYAYCRNRMMEEAKRIFEEMKDPAPAPDVVTYNTFIATYAADSMFVEAIDVV 722
Cdd:PLN03218  698 KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777

                         490
                  ....*....|....*....
gi 920693010  723 RHMIKQGCRPNQNTYNSIV 741
Cdd:PLN03218  778 SQAKEDGIKPNLVMCRCIT 796
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 158-220 1.07e-22

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


:

Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 92.04  E-value: 1.07e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 920693010  158 SLLHDLETDGVEVDVYGYTSLITAYANNRKYRDALKVFGKMKEVGCEPTLITYNAILNVYGKM 220
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 208-242 6.07e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


:

Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.12  E-value: 6.07e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 920693010  208 ITYNAILNVYGKMGVpWTKIIALVQDMKCRGLAPD 242
Cdd:TIGR00756   1 VTYNTLIDGLCKAGR-VEEALELFKEMKERGIEPD 34
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 246-741 2.84e-35

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 144.63  E-value: 2.84e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  246 YNTLIsccRAGSLyEEALDLFEEIKVAG-FTPDVVTYNVLLDVYGKSRRPKEAIEVLKQMELdgflPSVVTYNSLVSAYV 324
Cdd:PLN03218  377 YNRLL---RDGRI-KDCIDLLEDMEKRGlLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCA 448

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  325 RGGLLEDALELKRKMVEKGIKPDVYTYTTLLSGFVKAGKDELAMEVFGEMRYVGCKPNICTFNALIKMYGDRGKfeemer 404
Cdd:PLN03218  449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ------ 522

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  405 vfkeikvckcspdivtwntLLAVFGQNGMdsevsgvfeeMKRAGFVPERDTFNTLISAYGRCGSFDQAMSVYKRM-LEAG 483
Cdd:PLN03218  523 -------------------VAKAFGAYGI----------MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMkAETH 573

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  484 -VSPDLSTYNAVLATLARGGLWEQSEKVLAEMKNGGCKPNEATYSSLLHAYANGREVErmnaLAEEIYSDrikthtvlln 562
Cdd:PLN03218  574 pIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD----FALSIYDD---------- 639

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  563 tlvlvnskvdlveqterafleFRKRGISPDITTMNAMLSIYGRKnRKGSKANEILNYMYESGLTLSLTAYNSLMYGYSRT 642
Cdd:PLN03218  640 ---------------------MKKKGVKPDEVFFSALVDVAGHA-GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  643 KKFQKSEQILREILDKGIEPDVVSYNVVIYAYCRNRMMEEAKRIFEEMKDPAPAPDVVTYNTFIATYAADSMFVEAIDVV 722
Cdd:PLN03218  698 KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777

                         490
                  ....*....|....*....
gi 920693010  723 RHMIKQGCRPNQNTYNSIV 741
Cdd:PLN03218  778 SQAKEDGIKPNLVMCRCIT 796
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 158-220 1.07e-22

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 92.04  E-value: 1.07e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 920693010  158 SLLHDLETDGVEVDVYGYTSLITAYANNRKYRDALKVFGKMKEVGCEPTLITYNAILNVYGKM 220
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 335-396 3.26e-22

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 90.50  E-value: 3.26e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 920693010  335 LKRKMVEKGIKPDVYTYTTLLSGFVKAGKDELAMEVFGEMRYVGCKPNICTFNALIKMYGDR 396
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 259-514 6.52e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 57.82  E-value: 6.52e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 259 YEEALDLFEE-IKVAGFTPDvvTYNVLLDVYGKSRRPKEAIEVLKQ-MELDGFLPSVvtYNSLVSAYVRGGLLEDALELK 336
Cdd:COG2956   24 PDKAIDLLEEaLELDPETVE--AHLALGNLYRRRGEYDRAIRIHQKlLERDPDRAEA--LLELAQDYLKAGLLDRAEELL 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 337 RKMVEKGIKpDVYTYTTLLSGFVKAGKDELAMEVFGEMRYVGcKPNICTFNALIKMYGDRGKFEEMERVFKeiKVCKCSP 416
Cdd:COG2956  100 EKLLELDPD-DAEALRLLAEIYEQEGDWEKAIEVLERLLKLG-PENAHAYCELAELYLEQGDYDEAIEALE--KALKLDP 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 417 DIVTWNTLLA-VFGQNGMDSEVSGVFEEMKRAGfvPER-DTFNTLISAYGRCGSFDQAMSVYKRMLEAGvsPDLSTYNAV 494
Cdd:COG2956  176 DCARALLLLAeLYLEQGDYEEAIAALERALEQD--PDYlPALPRLAELYEKLGDPEEALELLRKALELD--PSDDLLLAL 251

                        250       260
                 ....*....|....*....|
gi 920693010 495 LATLARGGLWEQSEKVLAEM 514
Cdd:COG2956  252 ADLLERKEGLEAALALLERQ 271
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 314-348 3.64e-08

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 49.76  E-value: 3.64e-08
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 920693010  314 VTYNSLVSAYVRGGLLEDALELKRKMVEKGIKPDV 348
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 175-206 7.90e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 43.21  E-value: 7.90e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 920693010  175 YTSLITAYANNRKYRDALKVFGKMKEVGCEPT 206
Cdd:TIGR00756   3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 208-242 6.07e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.12  E-value: 6.07e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 920693010  208 ITYNAILNVYGKMGVpWTKIIALVQDMKCRGLAPD 242
Cdd:TIGR00756   1 VTYNTLIDGLCKAGR-VEEALELFKEMKERGIEPD 34
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 246-741 2.84e-35

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 144.63  E-value: 2.84e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  246 YNTLIsccRAGSLyEEALDLFEEIKVAG-FTPDVVTYNVLLDVYGKSRRPKEAIEVLKQMELdgflPSVVTYNSLVSAYV 324
Cdd:PLN03218  377 YNRLL---RDGRI-KDCIDLLEDMEKRGlLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCA 448

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  325 RGGLLEDALELKRKMVEKGIKPDVYTYTTLLSGFVKAGKDELAMEVFGEMRYVGCKPNICTFNALIKMYGDRGKfeemer 404
Cdd:PLN03218  449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ------ 522

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  405 vfkeikvckcspdivtwntLLAVFGQNGMdsevsgvfeeMKRAGFVPERDTFNTLISAYGRCGSFDQAMSVYKRM-LEAG 483
Cdd:PLN03218  523 -------------------VAKAFGAYGI----------MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMkAETH 573

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  484 -VSPDLSTYNAVLATLARGGLWEQSEKVLAEMKNGGCKPNEATYSSLLHAYANGREVErmnaLAEEIYSDrikthtvlln 562
Cdd:PLN03218  574 pIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD----FALSIYDD---------- 639

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  563 tlvlvnskvdlveqterafleFRKRGISPDITTMNAMLSIYGRKnRKGSKANEILNYMYESGLTLSLTAYNSLMYGYSRT 642
Cdd:PLN03218  640 ---------------------MKKKGVKPDEVFFSALVDVAGHA-GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  643 KKFQKSEQILREILDKGIEPDVVSYNVVIYAYCRNRMMEEAKRIFEEMKDPAPAPDVVTYNTFIATYAADSMFVEAIDVV 722
Cdd:PLN03218  698 KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777

                         490
                  ....*....|....*....
gi 920693010  723 RHMIKQGCRPNQNTYNSIV 741
Cdd:PLN03218  778 SQAKEDGIKPNLVMCRCIT 796
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 228-671 4.49e-32

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 134.23  E-value: 4.49e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  228 IALVQDMKCRG-LAPDLCTYNTLISCCRAGSLYEEALDLFEEIKvagfTPDVVTYNVLLDVYGKSRRPKEAIEVLKQMEL 306
Cdd:PLN03218  390 IDLLEDMEKRGlLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQE 465

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  307 DGFLPSVVTYNSLVSAYVRGGLLEDALELKRKMVEKGIKPDVYTYTTLLSGFVKAGKDELAMEVFGEMRYVGCKPNICTF 386
Cdd:PLN03218  466 AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVF 545

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  387 NALIKMYGDRGKFEEMERVFKEIK--VCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRAGFVPERDTFNTLISAYG 464
Cdd:PLN03218  546 NALISACGQSGAVDRAFDVLAEMKaeTHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS 625

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  465 RCGSFDQAMSVYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKNGGCKPNEATYSSLLHAYANGREVERMNA 544
Cdd:PLN03218  626 QKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALE 705

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  545 LAEEIYSDRIKthtvllntlvlvnskvdlveqteraflefrkrgisPDITTMNAMLSIYGRKNRKgSKANEILNYMYESG 624
Cdd:PLN03218  706 LYEDIKSIKLR-----------------------------------PTVSTMNALITALCEGNQL-PKALEVLSEMKRLG 749

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*..
gi 920693010  625 LTLSLTAYNSLMYGYSRTKKFQKSEQILREILDKGIEPDVVSYNVVI 671
Cdd:PLN03218  750 LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 1-562 1.96e-31

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 131.15  E-value: 1.96e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010   1 MAQNVSVPLILPNPPTATPSNTTFPKTLTLTPLLQDLFFNKKPSSPprlhVTTSTHPTPRLSPQAHRILQtlihpsfdSN 80
Cdd:PLN03081   5 LARYQSIRLDEIRDSLSNPRLLHSPRKFSLRGRRTKTPFSSISCSS----VEQGLKPRPRLKPEPIRIEV--------SE 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  81 SFHQIFPLLFHQPASSSLSSDIlgiiKALGFNNKFDLALSVFDFIRTRNDLvsllngsviavivtllgktgrvshaasll 160
Cdd:PLN03081  73 SKDARLDDTQIRKSGVSLCSQI----EKLVACGRHREALELFEILEAGCPF----------------------------- 119

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 161 hdletdgvEVDVYGYTSLITAYANNRKYRDALKVFGKMKEVGCEPTLITYNAILNVYGKMGVpwtkII---ALVQDMKCR 237
Cdd:PLN03081 120 --------TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGM----LIdarRLFDEMPER 187

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 238 GLApdlcTYNTLISCCRAGSLYEEALDLFEEIKVAGFTPDVVTYNV---------------------------------- 283
Cdd:PLN03081 188 NLA----SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVmlrasaglgsaragqqlhccvlktgvvgdtfvsc 263

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 284 -LLDVYGKSRRPKEAIEVLKQMeldgflP--SVVTYNSLVSAYVRGGLLEDALELKRKMVEKGIKPDVYTYTTLLSGFVK 360
Cdd:PLN03081 264 aLIDMYSKCGDIEDARCVFDGM------PekTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR 337

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 361 AGKDELAMEVFGEMRYVGCKPNICTFNALIKMYGDRGKFEEMERVFKEIKVckcsPDIVTWNTLLAVFGQNGMDSEVSGV 440
Cdd:PLN03081 338 LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEM 413

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 441 FEEMKRAGFVPERDTFNTLISAYGRCGSFDQAMSVYKRMLEA-GVSPDLSTYNAVLATLARGGLWEQSekvLAEMKNGGC 519
Cdd:PLN03081 414 FERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENhRIKPRAMHYACMIELLGREGLLDEA---YAMIRRAPF 490

                        570       580       590       600
                 ....*....|....*....|....*....|....*....|....*.
gi 920693010 520 KPNEATYSSLLHAYANGREVERMNALAEEIYS---DRIKTHTVLLN 562
Cdd:PLN03081 491 KPTVNMWAALLTACRIHKNLELGRLAAEKLYGmgpEKLNNYVVLLN 536
PLN03077 PLN03077
Protein ECB2; Provisional
 190-696 1.27e-27

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 119.95  E-value: 1.27e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 190 DALKVFGKMKEvgcePTLITYNAILNVYGKMGVpWTKIIALVQDMKCRGLAPDLCTYNTLISCCRAGSLYEEALDLFEEI 269
Cdd:PLN03077 139 HAWYVFGKMPE----RDLFSWNVLVGGYAKAGY-FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHV 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 270 KVAGFTPDVVTYNVLLDVYGKSRRPKEAIEVLKQMELDgflpSVVTYNSLVSAYVRGGLLEDALELKRKMVEKGIKPDVY 349
Cdd:PLN03077 214 VRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLM 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 350 TYTTLLSGFVKAGKDELAMEVFGEMRYVGCKPNICTFNALIKMYGDRGKFEEMERVFKEIKvCKcspDIVTWNTLLAVFG 429
Cdd:PLN03077 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-TK---DAVSWTAMISGYE 365

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 430 QNGMDSEVSGVFEEMKRAGFVPERDTF-----------------------------------NTLISAYGRCGSFDQAMS 474
Cdd:PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIasvlsacaclgdldvgvklhelaerkglisyvvvaNALIEMYSKCKCIDKALE 445

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 475 VYKRMLEAgvspDLSTYNAVLATLARGGLWEQSEKVLAEMKnGGCKPNEATYSSLLHAYAngreveRMNAL--AEEIYSD 552
Cdd:PLN03077 446 VFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACA------RIGALmcGKEIHAH 514

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 553 RIKTHTVLLNtlVLVNSKVDL---VEQTERAFLEFRKRgiSPDITTMNAMLSIYGRKNrKGSKANEILNYMYESGLTLSL 629
Cdd:PLN03077 515 VLRTGIGFDG--FLPNALLDLyvrCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHG-KGSMAVELFNRMVESGVNPDE 589

                        490       500       510       520       530       540
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 920693010 630 TAYNSLMYGYSRTKKFQKSEQILREILDK-GIEPDVVSYNVVIYAYCRNRMMEEAKRIFEEMK-DPAPA 696
Cdd:PLN03077 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKySITPNLKHYACVVDLLGRAGKLTEAYNFINKMPiTPDPA 658
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 156-488 2.55e-27

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 119.21  E-value: 2.55e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  156 AASLLHDLETDGVEVDVYGYTSLITAYANNRKYrDAL-KVFGKMKEVGCEPTLITYNAILNVYGKMG-VPwtKIIALVQD 233
Cdd:PLN03218  456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV-DAMfEVFHEMVNAGVEANVHTFGALIDGCARAGqVA--KAFGAYGI 532

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  234 MKCRGLAPDLCTYNTLISCC-RAGSLyEEALDLFEEIKVAG--FTPDVVTYNVLLDV---YGKSRRPKEAIEVLKQMELD 307
Cdd:PLN03218  533 MRSKNVKPDRVVFNALISACgQSGAV-DRAFDVLAEMKAEThpIDPDHITVGALMKAcanAGQVDRAKEVYQMIHEYNIK 611

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  308 GFlPSVvtYNSLVSAYVRGGLLEDALELKRKMVEKGIKPDVYTYTTLLSGFVKAGKDELAMEVFGEMRYVGCKPNICTFN 387
Cdd:PLN03218  612 GT-PEV--YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS 688

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  388 ALIKMYGDRGKFEEMERVFKEIKVCKCSPDIVTWNTLL-AVFGQNGMDSEVSgVFEEMKRAGFVPERDTFNTLISAYGRC 466
Cdd:PLN03218  689 SLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALItALCEGNQLPKALE-VLSEMKRLGLCPNTITYSILLVASERK 767

                         330       340
                  ....*....|....*....|..
gi 920693010  467 GSFDQAMSVYKRMLEAGVSPDL 488
Cdd:PLN03218  768 DDADVGLDLLSQAKEDGIKPNL 789
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 229-723 2.86e-27

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 118.05  E-value: 2.86e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 229 ALVQDMKCRGLAPDLCT-YNTLISCCRagslYEEALDLFEEIKVAG-FTPDVVTYNVLLDVYGKSRRPKEAIEVLKQMEL 306
Cdd:PLN03081  76 ARLDDTQIRKSGVSLCSqIEKLVACGR----HREALELFEILEAGCpFTLPASTYDALVEACIALKSIRCVKAVYWHVES 151

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 307 DGFLPSVVTYNSLVSAYVRGGLLEDALELKRKMVEKGIkpdvYTYTTLLSGFVKAGKDELAMEVFGEMRYVGCKPNICTF 386
Cdd:PLN03081 152 SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNL----ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTF 227

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 387 NALIKMYGDRGKFeemeRVFKEIKVCKCspdivtwntllavfgqngmdsevsgvfeemkRAGFVPERDTFNTLISAYGRC 466
Cdd:PLN03081 228 VVMLRASAGLGSA----RAGQQLHCCVL-------------------------------KTGVVGDTFVSCALIDMYSKC 272

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 467 GSFDQAMSVYKRMLEAGVSpdlsTYNAVLATLARGGLWEQSEKVLAEMKNGGCKPNEATYSsllhayangrevermnala 546
Cdd:PLN03081 273 GDIEDARCVFDGMPEKTTV----AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFS------------------- 329

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 547 eeiysdrikthtvllnTLVLVNSKVDLVEQTERAFLEFRKRGISPDITTMNAMLSIYGRKNRKgskanEILNYMYESGLT 626
Cdd:PLN03081 330 ----------------IMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM-----EDARNVFDRMPR 388

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 627 LSLTAYNSLMYGYSRTKKFQKSEQILREILDKGIEPDVVSYNVVIYAYCRNRMMEEAKRIFEEM-KDPAPAPDVVTYNTF 705
Cdd:PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMsENHRIKPRAMHYACM 468

                        490
                 ....*....|....*...
gi 920693010 706 IATYAADSMFVEAIDVVR 723
Cdd:PLN03081 469 IELLGREGLLDEAYAMIR 486
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 241-617 1.44e-26

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 116.90  E-value: 1.44e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  241 PDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFTPDVVTYNVLLDVYGKSRRPKEAIEVLKQMELDGFLPSVVTYNSLV 320
Cdd:PLN03218  435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  321 SAYVRGGLLEDALELKRKMVEKGIKPDVYTYTTLLSGFVKAGKDELAMEVFGEMRYVG--CKPNICTFNALIKMYGDRGK 398
Cdd:PLN03218  515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAEThpIDPDHITVGALMKACANAGQ 594

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  399 FEEMERVFKEIKV--CKCSPDIVTwntlLAV--FGQNGMDSEVSGVFEEMKRAGFVPERDTFNTLISAYGRCGSFDQAMS 474
Cdd:PLN03218  595 VDRAKEVYQMIHEynIKGTPEVYT----IAVnsCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  475 VYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKNGGCKPNEATYSSLLHAYANGREVERMNALAEEIYSDRI 554
Cdd:PLN03218  671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 920693010  555 KTHTVLLNTLVLVNSKVDLVEQTERAFLEFRKRGISPDITTMNAMLSIYGRKNRKGSKANEIL 617
Cdd:PLN03218  751 CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPV 813
PLN03077 PLN03077
Protein ECB2; Provisional
 139-550 9.78e-26

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 113.79  E-value: 9.78e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 139 VIAVIVTLLGKTGRVSHAASLLhdletDGVEV-DVYGYTSLITAYANNRKYRDALKVFGKMKEVGCEPTLITYNAILNVY 217
Cdd:PLN03077 224 VVNALITMYVKCGDVVSARLVF-----DRMPRrDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC 298

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 218 GKMGVpwtkiIALVQDMKC----RGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIKvagfTPDVVTYNVLLDVYGKSRR 293
Cdd:PLN03077 299 ELLGD-----ERLGREMHGyvvkTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGL 369

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 294 PKEAIEVLKQMELDGFLPSVVTYNSLVSAYVRGGLLEDALEL------------------------KRKMVEKGI----- 344
Cdd:PLN03077 370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLhelaerkglisyvvvanaliemysKCKCIDKALevfhn 449

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 345 --KPDVYTYTTLLSGFVKAGKDELAMEVFGEMRyVGCKPNICTF-----------------------------------N 387
Cdd:PLN03077 450 ipEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLiaalsacarigalmcgkeihahvlrtgigfdgflpN 528

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 388 ALIKMYGDRGKFEEMERVFkeikvCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRAGFVPERDTFNTLISAYGRCG 467
Cdd:PLN03077 529 ALLDLYVRCGRMNYAWNQF-----NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 468 SFDQAMSVYKRM-LEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKnggCKPNEATYSSLLHAYANGREVERMNALA 546
Cdd:PLN03077 604 MVTQGLEYFHSMeEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAA 680


                 ....
gi 920693010 547 EEIY 550
Cdd:PLN03077 681 QHIF 684
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 149-498 1.13e-24

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 110.74  E-value: 1.13e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  149 KTGRVSHAASLLHDLETDGVEVDVYGYTSLITAYANNRKYRDALKVFGKMKEVGCEPTLITYNAILNVYGKMGVPwTKII 228
Cdd:PLN03218  484 KSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV-DRAF 562

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  229 ALVQDMKCRG--LAPDLCTYNTLIS-CCRAGSL----------------------------------YEEALDLFEEIKV 271
Cdd:PLN03218  563 DVLAEMKAEThpIDPDHITVGALMKaCANAGQVdrakevyqmiheynikgtpevytiavnscsqkgdWDFALSIYDDMKK 642

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  272 AGFTPDVVTYNVLLDVYGKSRRPKEAIEVLKQMELDGFLPSVVTYNSLVSAYVRGGLLEDALELKRKMVEKGIKPDVYTY 351
Cdd:PLN03218  643 KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTM 722

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  352 TTLLSGFVKAGKDELAMEVFGEMRYVGCKPNICTFNALIKMYGDRGKFEEMERVFKEIKVCKCSPDIVTwntllavfgqn 431
Cdd:PLN03218  723 NALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVM----------- 791

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 920693010  432 gMDSEVSGVFEEMKRAGFVPERD-TFNTlisayGRCGSFDQ----AMSVYKRMLEAGVSPDLSTYNAVLATL 498
Cdd:PLN03218  792 -CRCITGLCLRRFEKACALGEPVvSFDS-----GRPQIENKwtswALMVYRETISAGTLPTMEVLSQVLGCL 857
PLN03077 PLN03077
Protein ECB2; Provisional
 230-741 8.94e-24

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 107.63  E-value: 8.94e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 230 LVQDMKCRGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFTPDVVTYNVLLDVYGKSRRPKEAIEVLKQM-ELDG 308
Cdd:PLN03077  73 LLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMpERDL 152

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 309 FlpsvvTYNSLVSAYVRGGLLEDALELKRKMVEKGIKPDVYTYTTLLSGFvkAGKDELAM--EVFGEMRYVGCKPNICTF 386
Cdd:PLN03077 153 F-----SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTC--GGIPDLARgrEVHAHVVRFGFELDVDVV 225

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 387 NALIKMYGDRGKFEEMERVFKEIKVckcsPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRAGFVPERDTFNTLISAYGRC 466
Cdd:PLN03077 226 NALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL 301

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 467 GSFDQAMSVYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEM----------------KNG------------- 517
Cdd:PLN03077 302 GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMetkdavswtamisgyeKNGlpdkaletyalme 381

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 518 --GCKPNEATYSSLLHAYANGREVERMNALAEEIYSDRIKTHTVLLNTLVLVNSKVDLVEQTerafLEFRKRGISPDITT 595
Cdd:PLN03077 382 qdNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA----LEVFHNIPEKDVIS 457

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 596 MNAMLSIYgRKNRKGSKANEILNYMYESGLTLSLTaYNSLMYGYSRTKKFQKSEQILREILDKGIEPDVVSYNVVIYAYC 675
Cdd:PLN03077 458 WTSIIAGL-RLNNRCFEALIFFRQMLLTLKPNSVT-LIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV 535

                        490       500       510       520       530       540
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 920693010 676 RNRMMEEAKRIFEemkdpAPAPDVVTYNTFIATYAADSMFVEAIDVVRHMIKQGCRPNQNTYNSIV 741
Cdd:PLN03077 536 RCGRMNYAWNQFN-----SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 158-220 1.07e-22

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 92.04  E-value: 1.07e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 920693010  158 SLLHDLETDGVEVDVYGYTSLITAYANNRKYRDALKVFGKMKEVGCEPTLITYNAILNVYGKM 220
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
PLN03077 PLN03077
Protein ECB2; Provisional
 124-530 1.20e-22

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 103.78  E-value: 1.20e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 124 FIRTRNDLV--SLLNGSVIAVIVTLLG--KTGRVSHAASLlhdleTDGVEVDVYGYTSLITAYANNRKYRDALKVFGKMK 199
Cdd:PLN03077 276 FFTMRELSVdpDLMTITSVISACELLGdeRLGREMHGYVV-----KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 200 evgCEpTLITYNAILNVYGKMGVPwTKIIALVQDMKCRGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFTPDVV 279
Cdd:PLN03077 351 ---TK-DAVSWTAMISGYEKNGLP-DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 280 TYNVLLDVYGKSRRPKEAIEVLKQM-ELDgflpsVVTYNSLVSAYVRGGLLEDALELKRKMVEKgIKPDVYTYTTLLS-- 356
Cdd:PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIpEKD-----VISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSac 499

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 357 ---GFVKAGKDELAMEVFGEMRYVGCKPNictfnALIKMYGDRGKFEEMERVFkeikvCKCSPDIVTWNTLLAVFGQNGM 433
Cdd:PLN03077 500 ariGALMCGKEIHAHVLRTGIGFDGFLPN-----ALLDLYVRCGRMNYAWNQF-----NSHEKDVVSWNILLTGYVAHGK 569

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 434 DsevsgvfeemkragfvperdtfntlisaygrcgsfDQAMSVYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAE 513
Cdd:PLN03077 570 G-----------------------------------SMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614

                        410
                 ....*....|....*...
gi 920693010 514 MK-NGGCKPNEATYSSLL 530
Cdd:PLN03077 615 MEeKYSITPNLKHYACVV 632
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 335-396 3.26e-22

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 90.50  E-value: 3.26e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 920693010  335 LKRKMVEKGIKPDVYTYTTLLSGFVKAGKDELAMEVFGEMRYVGCKPNICTFNALIKMYGDR 396
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
PLN03077 PLN03077
Protein ECB2; Provisional
 355-753 3.33e-20

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 96.07  E-value: 3.33e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 355 LSGFVKAGKDELAMEVFGEMRYVGCKPNICTFNALIKMYGDRGKFEEMERVFKEIKVCKCSPDIVTWNTLLAVFGQNGMD 434
Cdd:PLN03077  58 LRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGEL 137

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 435 SEVSGVFEEMkragfvPERDTF--NTLISAYGRCGSFDQAMSVYKRMLEAGVSPDLSTYNAVLATLarGGL--WEQSEKV 510
Cdd:PLN03077 138 VHAWYVFGKM------PERDLFswNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTC--GGIpdLARGREV 209

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 511 LAEMKNGGCKPNEATYSSLLHAYANGREVERmnalAEEIYSDRIKTHTVLLNTLVLVNSKVDLVEQTERAFLEFRKRGIS 590
Cdd:PLN03077 210 HAHVVRFGFELDVDVVNALITMYVKCGDVVS----ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 591 PDITTMNAMLSIYGRKNRKGSkANEILNYMYESGLTLSLTAYNSLMYGYSRTKKFQKSEQILREILDKgiepDVVSYNVV 670
Cdd:PLN03077 286 PDLMTITSVISACELLGDERL-GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAM 360

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 671 IYAYCRNRMMEEAKRIFEEMKDPAPAPDVVTYNTFIATYAADSMFVEAIDVVRHMIKQGCRPNQNTYNSIVDWYCKLKLR 750
Cdd:PLN03077 361 ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440


                 ...
gi 920693010 751 DEA 753
Cdd:PLN03077 441 DKA 443
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 139-392 7.83e-19

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 91.86  E-value: 7.83e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  139 VIAVIVTLLGKTGRVSHAASLLHDL--ETDGVEVDVYGYTSLITAYANNRKYRDALKVFGKMKEVGCEPTLITYNAILNV 216
Cdd:PLN03218  544 VFNALISACGQSGAVDRAFDVLAEMkaETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS 623

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  217 YGKMGvPWTKIIALVQDMKCRGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFTPDVVTYNVLLDVYGKSRRPKE 296
Cdd:PLN03218  624 CSQKG-DWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK 702

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  297 AIEVLKQMELDGFLPSVVTYNSLVSAYVRGGLLEDALELKRKMVEKGIKPDVYTYTTLLSGFVKAGKDELAMEVFGEMRY 376
Cdd:PLN03218  703 ALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782

                         250
                  ....*....|....*.
gi 920693010  377 VGCKPNICTFNALIKM 392
Cdd:PLN03218  783 DGIKPNLVMCRCITGL 798
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 311-360 5.63e-16

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 72.40  E-value: 5.63e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 920693010  311 PSVVTYNSLVSAYVRGGLLEDALELKRKMVEKGIKPDVYTYTTLLSGFVK 360
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 167-448 1.96e-14

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 77.22  E-value: 1.96e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 167 GVEVDVYGYTSLITAYANNRKYRDALKVFGKMKEvgcePTLITYNAILNVYGKMGVPwTKIIALVQDMKCRGLAPDLCTY 246
Cdd:PLN03081 254 GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYS-EEALCLYYEMRDSGVSIDQFTF 328

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 247 NTLISCCRAGSLYEEALDLFEEIKVAGFTPDVVTYNVLLDVYGKSRRPKEAIEVLKQMELDgflpSVVTYNSLVSAYVRG 326
Cdd:PLN03081 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNH 404

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 327 GLLEDALELKRKMVEKGIKPDVYTYTTLLSGFVKAGKDELAMEVFGEMRYV-GCKPNICTFNALIKMYGDRGKFEEM--- 402
Cdd:PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENhRIKPRAMHYACMIELLGREGLLDEAyam 484

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 920693010 403 -------------------ERVFKEIKVCKCSPD---------IVTWNTLLAVFGQNGMDSEVSGVFEEMKRAG 448
Cdd:PLN03081 485 irrapfkptvnmwaalltaCRIHKNLELGRLAAEklygmgpekLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 662-706 5.98e-13

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 63.54  E-value: 5.98e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 920693010  662 PDVVSYNVVIYAYCRNRMMEEAKRIFEEMKDPAPAPDVVTYNTFI 706
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILI 45
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 276-325 2.44e-12

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 62.00  E-value: 2.44e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 920693010  276 PDVVTYNVLLDVYGKSRRPKEAIEVLKQMELDGFLPSVVTYNSLVSAYVR 325
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 346-393 6.11e-12

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 60.84  E-value: 6.11e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 920693010  346 PDVYTYTTLLSGFVKAGKDELAMEVFGEMRYVGCKPNICTFNALIKMY 393
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 241-290 1.67e-11

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 59.68  E-value: 1.67e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 920693010  241 PDLCTYNTLIS-CCRAGsLYEEALDLFEEIKVAGFTPDVVTYNVLLDVYGK 290
Cdd:pfam13041   1 PDVVTYNTLINgYCKKG-KVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 171-219 3.32e-11

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 58.91  E-value: 3.32e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 920693010  171 DVYGYTSLITAYANNRKYRDALKVFGKMKEVGCEPTLITYNAILNVYGK 219
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 697-746 3.48e-11

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 58.53  E-value: 3.48e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 920693010  697 PDVVTYNTFIATYAADSMFVEAIDVVRHMIKQGCRPNQNTYNSIVDWYCK 746
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 486-535 1.09e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 57.37  E-value: 1.09e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 920693010  486 PDLSTYNAVLATLARGGLWEQSEKVLAEMKNGGCKPNEATYSSLLHAYAN 535
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 332-490 9.50e-10

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 59.33  E-value: 9.50e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  332 ALELKRKMVEKGIKPDVYTYTTLLSGFVKA-----GKDELAM----EVFGEMRYVGCKPNICTFNALIKMYGDRGKFEEM 402
Cdd:pfam17177  30 ALALYDAAKAEGVRLAQYHYNVLLYLCSKAadatdLKPQLAAdrgfEVFEAMKAQGVSPNEATYTAVARLAAAKGDGDLA 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  403 ERVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRAGFVPERDTFNTLISAYGRCGSFDQAMSVYKRMLEA 482
Cdd:pfam17177 110 FDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALLKVSAKAGRADKVYAYLHRLRDA 189


                  ....*...
gi 920693010  483 GVSPDLST 490
Cdd:pfam17177 190 VRQVSEST 197
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 440-538 1.02e-09

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 59.33  E-value: 1.02e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  440 VFEEMKRAGFVPERDTFNTLISAYGRCGSFDQAMSVYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKNGGC 519
Cdd:pfam17177  77 VFEAMKAQGVSPNEATYTAVARLAAAKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGV 156

                          90       100
                  ....*....|....*....|
gi 920693010  520 KPNEATYSSLLHAYAN-GRE 538
Cdd:pfam17177 157 ELEEPELAALLKVSAKaGRA 176
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 658-691 1.09e-09

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 53.89  E-value: 1.09e-09
                          10        20        30
                  ....*....|....*....|....*....|....
gi 920693010  658 KGIEPDVVSYNVVIYAYCRNRMMEEAKRIFEEMK 691
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 651-709 1.10e-09

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 55.06  E-value: 1.10e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 920693010  651 ILREILDKGIEPDVVSYNVVIYAYCRNRMMEEAKRIFEEMKDPAPAPDVVTYNTFIATY 709
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 381-425 1.34e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 54.29  E-value: 1.34e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 920693010  381 PNICTFNALIKMYGDRGKFEEMERVFKEIKVCKCSPDIVTWNTLL 425
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILI 45
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 265-324 3.62e-09

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 53.52  E-value: 3.62e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  265 LFEEIKVAGFTPDVVTYNVLLDVYGKSRRPKEAIEVLKQMELDGFLPSVVTYNSLVSAYV 324
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIG 61
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 455-500 3.74e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 52.75  E-value: 3.74e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 920693010  455 TFNTLISAYGRCGSFDQAMSVYKRMLEAGVSPDLSTYNAVLATLAR 500
Cdd:pfam13041   5 TYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 228-379 5.82e-09

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 57.02  E-value: 5.82e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  228 IALVQDMKCRGLAPDLCTYNTLISCCRAG-----SLYEEALD----LFEEIKVAGFTPDVVTYNVLLDVYGKSRRPKEAI 298
Cdd:pfam17177  31 LALYDAAKAEGVRLAQYHYNVLLYLCSKAadatdLKPQLAADrgfeVFEAMKAQGVSPNEATYTAVARLAAAKGDGDLAF 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  299 EVLKQMELDGFLPSVVTYNSLVSAYVRGGLLEDALELKRKMVEKGIKPDVYTYTTLLSGFVKAGkdeLAMEVFGEM---- 374
Cdd:pfam17177 111 DLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALLKVSAKAG---RADKVYAYLhrlr 187


                  ....*
gi 920693010  375 RYVGC 379
Cdd:pfam17177 188 DAVRQ 192
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 248-397 5.88e-09

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 57.02  E-value: 5.88e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  248 TLISCCRAGSLyEEALDLFEEIKVAGFTPDVVTYNVLLDVYGKSRRPKE---------AIEVLKQMELDGFLPSVVTYNS 318
Cdd:pfam17177  17 QLDKCSKHADA-TGALALYDAAKAEGVRLAQYHYNVLLYLCSKAADATDlkpqlaadrGFEVFEAMKAQGVSPNEATYTA 95

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 920693010  319 LVSAYVRGGLLEDALELKRKMVEKGIKPDVYTYTTLLSGFVKAGKDELAMEVFGEMRYVGCKPNICTFNALIKMYGDRG 397
Cdd:pfam17177  96 VARLAAAKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALLKVSAKAG 174
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 631-676 6.34e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 52.37  E-value: 6.34e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 920693010  631 AYNSLMYGYSRTKKFQKSEQILREILDKGIEPDVVSYNVVIYAYCR 676
Cdd:pfam13041   5 TYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 259-514 6.52e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 57.82  E-value: 6.52e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 259 YEEALDLFEE-IKVAGFTPDvvTYNVLLDVYGKSRRPKEAIEVLKQ-MELDGFLPSVvtYNSLVSAYVRGGLLEDALELK 336
Cdd:COG2956   24 PDKAIDLLEEaLELDPETVE--AHLALGNLYRRRGEYDRAIRIHQKlLERDPDRAEA--LLELAQDYLKAGLLDRAEELL 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 337 RKMVEKGIKpDVYTYTTLLSGFVKAGKDELAMEVFGEMRYVGcKPNICTFNALIKMYGDRGKFEEMERVFKeiKVCKCSP 416
Cdd:COG2956  100 EKLLELDPD-DAEALRLLAEIYEQEGDWEKAIEVLERLLKLG-PENAHAYCELAELYLEQGDYDEAIEALE--KALKLDP 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 417 DIVTWNTLLA-VFGQNGMDSEVSGVFEEMKRAGfvPER-DTFNTLISAYGRCGSFDQAMSVYKRMLEAGvsPDLSTYNAV 494
Cdd:COG2956  176 DCARALLLLAeLYLEQGDYEEAIAALERALEQD--PDYlPALPRLAELYEKLGDPEEALELLRKALELD--PSDDLLLAL 251

                        250       260
                 ....*....|....*....|
gi 920693010 495 LATLARGGLWEQSEKVLAEM 514
Cdd:COG2956  252 ADLLERKEGLEAALALLERQ 271
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 416-465 6.72e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 52.37  E-value: 6.72e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 920693010  416 PDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRAGFVPERDTFNTLISAYGR 465
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 342-375 7.74e-09

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 51.58  E-value: 7.74e-09
                          10        20        30
                  ....*....|....*....|....*....|....
gi 920693010  342 KGIKPDVYTYTTLLSGFVKAGKDELAMEVFGEMR 375
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 440-497 1.64e-08

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 51.59  E-value: 1.64e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 920693010  440 VFEEMKRAGFVPERDTFNTLISAYGRCGSFDQAMSVYKRMLEAGVSPDLSTYNAVLAT 497
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGV 59
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 205-254 2.13e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 50.82  E-value: 2.13e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 920693010  205 PTLITYNAILNVYGKMGVpWTKIIALVQDMKCRGLAPDLCTYNTLIS-CCR 254
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGK-VEEAFKLFNEMKKRGVKPNVYTYTILINgLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 314-348 3.64e-08

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 49.76  E-value: 3.64e-08
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 920693010  314 VTYNSLVSAYVRGGLLEDALELKRKMVEKGIKPDV 348
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 455-487 6.74e-08

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 48.99  E-value: 6.74e-08
                          10        20        30
                  ....*....|....*....|....*....|...
gi 920693010  455 TFNTLISAYGRCGSFDQAMSVYKRMLEAGVSPD 487
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 370-431 1.05e-07

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 49.28  E-value: 1.05e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 920693010  370 VFGEMRYVGCKPNICTFNALIKMYGDRGKFEEMERVFKEIKVCKCSPDIVTWNTLLAVFGQN 431
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 237-270 1.74e-07

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 47.73  E-value: 1.74e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 920693010  237 RGLAPDLCTYNTLISC-CRAGSLyEEALDLFEEIK 270
Cdd:pfam12854   1 KGLKPDVVTYNTLINGlCRAGRV-DEAFELLDEME 34
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 665-692 2.29e-07

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 47.46  E-value: 2.29e-07
                          10        20
                  ....*....|....*....|....*...
gi 920693010  665 VSYNVVIYAYCRNRMMEEAKRIFEEMKD 692
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKE 28
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 307-340 3.77e-07

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 46.96  E-value: 3.77e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 920693010  307 DGFLPSVVTYNSLVSAYVRGGLLEDALELKRKMV 340
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 314-344 8.36e-07

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 45.92  E-value: 8.36e-07
                          10        20        30
                  ....*....|....*....|....*....|.
gi 920693010  314 VTYNSLVSAYVRGGLLEDALELKRKMVEKGI 344
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 279-313 1.02e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 45.52  E-value: 1.02e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 920693010  279 VTYNVLLDVYGKSRRPKEAIEVLKQMELDGFLPSV 313
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 665-692 1.16e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 45.52  E-value: 1.16e-06
                          10        20
                  ....*....|....*....|....*...
gi 920693010  665 VSYNVVIYAYCRNRMMEEAKRIFEEMKD 692
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKE 28
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 474-535 1.35e-06

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 46.20  E-value: 1.35e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 920693010  474 SVYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKNGGCKPNEATYSSLLHAYAN 535
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGG 62
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 384-418 2.29e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 44.75  E-value: 2.29e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 920693010  384 CTFNALIKMYGDRGKFEEMERVFKEIKVCKCSPDI 418
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 455-484 2.53e-06

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 44.38  E-value: 2.53e-06
                          10        20        30
                  ....*....|....*....|....*....|
gi 920693010  455 TFNTLISAYGRCGSFDQAMSVYKRMLEAGV 484
Cdd:pfam01535   2 TYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 440-541 2.64e-06

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 48.93  E-value: 2.64e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  440 VFEEMKRAGFVPERDTFNTLI---------SAYGRCGSFDQAMSVYKRMLEAGVSPDLSTYNAV--LATLARGGlwEQSE 508
Cdd:pfam17177  33 LYDAAKAEGVRLAQYHYNVLLylcskaadaTDLKPQLAADRGFEVFEAMKAQGVSPNEATYTAVarLAAAKGDG--DLAF 110

                          90       100       110
                  ....*....|....*....|....*....|...
gi 920693010  509 KVLAEMKNGGCKPNEATYSSLLHAYANGREVER 541
Cdd:pfam17177 111 DLVKEMEAAGVSPRLRSYSPALHAYCEAGDADK 143
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 273-305 3.46e-06

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 44.26  E-value: 3.46e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 920693010  273 GFTPDVVTYNVLLDVYGKSRRPKEAIEVLKQME 305
Cdd:pfam12854   2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 616-677 5.58e-06

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 44.27  E-value: 5.58e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 920693010  616 ILNYMYESGLTLSLTAYNSLMYGYSRTKKFQKSEQILREILDKGIEPDVVSYNVVIYAYCRN 677
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 279-309 6.54e-06

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 43.22  E-value: 6.54e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 920693010  279 VTYNVLLDVYGKSRRPKEAIEVLKQMELDGF 309
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 175-206 7.90e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 43.21  E-value: 7.90e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 920693010  175 YTSLITAYANNRKYRDALKVFGKMKEVGCEPT 206
Cdd:TIGR00756   3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 244-278 1.37e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 42.44  E-value: 1.37e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 920693010  244 CTYNTLI-SCCRAGsLYEEALDLFEEIKVAGFTPDV 278
Cdd:TIGR00756   1 VTYNTLIdGLCKAG-RVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 631-664 1.55e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 42.44  E-value: 1.55e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 920693010  631 AYNSLMYGYSRTKKFQKSEQILREILDKGIEPDV 664
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 349-383 1.62e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 42.44  E-value: 1.62e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 920693010  349 YTYTTLLSGFVKAGKDELAMEVFGEMRYVGCKPNI 383
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 700-733 2.59e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 41.67  E-value: 2.59e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 920693010  700 VTYNTFIATYAADSMFVEAIDVVRHMIKQGCRPN 733
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 175-203 2.74e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 41.68  E-value: 2.74e-05
                          10        20
                  ....*....|....*....|....*....
gi 920693010  175 YTSLITAYANNRKYRDALKVFGKMKEVGC 203
Cdd:pfam01535   3 YNSLISGYCKNGKLEEALELFKEMKEKGI 31
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 626-737 2.89e-05

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 47.56  E-value: 2.89e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 626 TLSLTAYNSLMYGYSRTKKFQKSEQILREILDKGIEPDVVSYNVVIYAYCRNRMMEEAKRIFEEMkdpaPAPDVVTYNTF 705
Cdd:PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM----PERNLASWGTI 195

                         90       100       110
                 ....*....|....*....|....*....|..
gi 920693010 706 IATYAADSMFVEAIDVVRHMIKQGCRPNQNTY 737
Cdd:PLN03081 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTF 227
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 349-379 4.84e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 40.91  E-value: 4.84e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 920693010  349 YTYTTLLSGFVKAGKDELAMEVFGEMRYVGC 379
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 419-449 5.13e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 40.91  E-value: 5.13e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 920693010  419 VTWNTLLAVFGQNGMDSEVSGVFEEMKRAGF 449
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 591-641 7.20e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 40.81  E-value: 7.20e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 920693010  591 PDITTMNAMLSIYGRKNrKGSKANEILNYMYESGLTLSLTAYNSLMYGYSR 641
Cdd:pfam13041   1 PDVVTYNTLINGYCKKG-KVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 419-451 1.15e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 39.75  E-value: 1.15e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 920693010  419 VTWNTLLAVFGQNGMDSEVSGVFEEMKRAGFVP 451
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 490-523 1.44e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 39.75  E-value: 1.44e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 920693010  490 TYNAVLATLARGGLWEQSEKVLAEMKNGGCKPNE 523
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 245-274 1.51e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 39.37  E-value: 1.51e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 920693010  245 TYNTLIS-CCRAGsLYEEALDLFEEIKVAGF 274
Cdd:pfam01535   2 TYNSLISgYCKNG-KLEEALELFKEMKEKGI 31
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
245-410 1.55e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 44.23  E-value: 1.55e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 245 TYNTLISCCRAGSLYEEALDLFEeiKVAGFTPD-VVTYNVLLDVYGKSRRPKEAIEVLKQ-MELDgfLPSVVTYNSLVSA 322
Cdd:COG0457   10 AYNNLGLAYRRLGRYEEAIEDYE--KALELDPDdAEALYNLGLAYLRLGRYEEALADYEQaLELD--PDDAEALNNLGLA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 323 YVRGGLLEDALELKRKMVEkgIKP-DVYTYTTLLSGFVKAGKDELAMEVFGemRYVGCKPNIC-TFNALIKMYGDRGKFE 400
Cdd:COG0457   86 LQALGRYEEALEDYDKALE--LDPdDAEALYNLGLALLELGRYDEAIEAYE--RALELDPDDAdALYNLGIALEKLGRYE 161

                        170
                 ....*....|
gi 920693010 401 EMERVFKEIK 410
Cdd:COG0457  162 EALELLEKLE 171
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 378-410 2.65e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 38.87  E-value: 2.65e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 920693010  378 GCKPNICTFNALIKMYGDRGKFEEMERVFKEIK 410
Cdd:pfam12854   2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 448-479 6.16e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 37.71  E-value: 6.16e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 920693010  448 GFVPERDTFNTLISAYGRCGSFDQAMSVYKRM 479
Cdd:pfam12854   2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 509-604 6.48e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 38.49  E-value: 6.48e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  509 KVLAEMKNGGCKPNEATYSSLLHAYANGREVErmnaLAEEIysdrikthtvllntlvlvnskvdlveqteraFLEFRKRG 588
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLK----LALEI-------------------------------FERMKKKG 45

                          90
                  ....*....|....*.
gi 920693010  589 ISPDITTMNAMLSIYG 604
Cdd:pfam13812  46 IKPTLDTYNAILGVIG 61
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 654-782 8.11e-04

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 41.61  E-value: 8.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010  654 EILDKGIEPDVV----SYNVVIY---------AYCRNRMMEEAKRIFEEMKDPAPAPDVVTYNTFIATYAADSMFVEAID 720
Cdd:pfam17177  32 ALYDAAKAEGVRlaqyHYNVLLYlcskaadatDLKPQLAADRGFEVFEAMKAQGVSPNEATYTAVARLAAAKGDGDLAFD 111

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 920693010  721 VVRHMIKQGCRPNQNTYNSIVDWYCKLKlRDEACNFVQDlgNLDPH---IAEEEKSRLLERIAKK 782
Cdd:pfam17177 112 LVKEMEAAGVSPRLRSYSPALHAYCEAG-DADKAYEVEE--HMLAHgveLEEPELAALLKVSAKA 173
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 579-636 1.05e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 38.11  E-value: 1.05e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 920693010  579 RAFLEFRKRGISPDITTMNAMLSIYGRkNRKGSKANEILNYMYESGLTLSLTAYNSLM 636
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYAN-VGNLKLALEIFERMKKKGIKPTLDTYNAIL 57
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 385-414 1.29e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 36.67  E-value: 1.29e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 920693010  385 TFNALIKMYGDRGKFEEMERVFKEIKVCKC 414
Cdd:pfam01535   2 TYNSLISGYCKNGKLEEALELFKEMKEKGI 31
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 173-436 1.76e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.87  E-value: 1.76e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 173 YGYTSLITAYANNRKYRDALKVFGKMKEVgcEPTLI-TYNAILNVYGKMGVP------WTKIIALVQDmkcRGLApdlct 245
Cdd:COG2956    9 LGWYFKGLNYLLNGQPDKAIDLLEEALEL--DPETVeAHLALGNLYRRRGEYdrairiHQKLLERDPD---RAEA----- 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 246 YNTLISCCRAGSLYEEALDLFEE-IKVAGFTPDVvtYNVLLDVYGKSRRPKEAIEVLKQM-ELDGflPSVVTYNSLVSAY 323
Cdd:COG2956   79 LLELAQDYLKAGLLDRAEELLEKlLELDPDDAEA--LRLLAEIYEQEGDWEKAIEVLERLlKLGP--ENAHAYCELAELY 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 324 VRGGLLEDALELKRKMVEkgIKPD-VYTYTTLLSGFVKAGKDELAMEVFGEM-----RYVGckpnicTFNALIKMYGDRG 397
Cdd:COG2956  155 LEQGDYDEAIEALEKALK--LDPDcARALLLLAELYLEQGDYEEAIAALERAleqdpDYLP------ALPRLAELYEKLG 226

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 920693010 398 KFEEMERVFKeiKVCKCSPDIVTWNTLLAVFGQNGMDSE 436
Cdd:COG2956  227 DPEEALELLR--KALELDPSDDLLLALADLLERKEGLEA 263
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
171-371 4.46e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 39.60  E-value: 4.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 171 DVYGYTSLITAYANNRKYRDALKVFGKMKEVgcEPTL-ITYNAILNVYGKMGvpwtkiialvqdmkcrglapdlctyntl 249
Cdd:COG0457    7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALEL--DPDDaEALYNLGLAYLRLG---------------------------- 56

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 250 isccragsLYEEALDLFEeiKVAGFTPDVV-TYNVLLDVYGKSRRPKEAIEVLKQ-MELDGFLPSvvTYNSLVSAYVRGG 327
Cdd:COG0457   57 --------RYEEALADYE--QALELDPDDAeALNNLGLALQALGRYEEALEDYDKaLELDPDDAE--ALYNLGLALLELG 124

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 920693010 328 LLEDALELKRKMVEkgIKPD-VYTYTTLLSGFVKAGKDELAMEVF 371
Cdd:COG0457  125 RYDEAIEAYERALE--LDPDdADALYNLGIALEKLGRYEEALELL 167
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 208-242 6.07e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.12  E-value: 6.07e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 920693010  208 ITYNAILNVYGKMGVpWTKIIALVQDMKCRGLAPD 242
Cdd:TIGR00756   1 VTYNTLIDGLCKAGR-VEEALELFKEMKERGIEPD 34
TPR_12 pfam13424
Tetratricopeptide repeat;
243-303 6.11e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 36.21  E-value: 6.11e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 920693010  243 LCTYNTLISCCR-------AGSLYEEALDLFEEIKVAGFTPDVVTYNVLLDVYGKSRRPKEAIEVLKQ 303
Cdd:pfam13424   3 ATALNNLAAVLRrlgrydeALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLER 70
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 166-199 6.16e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 35.01  E-value: 6.16e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 920693010  166 DGVEVDVYGYTSLITAYANNRKYRDALKVFGKMK 199
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 259-373 7.28e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 37.48  E-value: 7.28e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920693010 259 YEEALDLFEEIkVAGFTPDVVTYNVLLDVYGKSRRPKEAIEVLKQ-MELDGFLPSVvtYNSLVSAYVRGGLLEDALELKR 337
Cdd:COG4783   20 YDEAEALLEKA-LELDPDNPEAFALLGEILLQLGDLDEAIVLLHEaLELDPDEPEA--RLNLGLALLKAGDYDEALALLE 96

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 920693010 338 KMVEkgIKPDVYTYTTLLSG-FVKAGKDELAMEVFGE 373
Cdd:COG4783   97 KALK--LDPEHPEAYLRLARaYRALGRPDEAIAALEK 131
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 414-445 9.89e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 34.24  E-value: 9.89e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 920693010  414 CSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMK 445
Cdd:pfam12854   3 LKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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