|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11742 |
PRK11742 |
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional |
27-602 |
0e+00 |
|
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
Pssm-ID: 236965 [Multi-domain] Cd Length: 575 Bit Score: 1375.39 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 27 VIGELRNRFGPDAFTVQPTRTGVPVVWVKREQLLEVGDFLKKLPKPYVMLFDLHGMDERLRTHRDGLPAADFSVFYHLIS 106
Cdd:PRK11742 1 VIGELRNRFGPDAFTVQATRTGIPVVWVKREQLLEVLRFLRKLPKPYVMLFDLHGIDERLRTHREGLPAADFTVFYHLIS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 107 IDRNRDIMLKVALSENDLHLPTFTKLFPNANWYERETWEMFGITFDGHPNLRRIMMPPTWEGHPLRKDYPARATEFDPFE 186
Cdd:PRK11742 81 IERNRDIMLKVALSENDLHVPTITKIFPNANWYERETWDMFGITFDGHPHLRRILMPPTWEGHPLRKDYPARATEFDPFE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 187 LTKAKQDLEMEALTFKPEEWGMKRGTDNEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQS 266
Cdd:PRK11742 161 LTKAKQDLEMEALRFKPEEWGMKRGTDNEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 267 WHSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQ 346
Cdd:PRK11742 241 WHSYIPYTDRIDYLGGCMNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYIGTFIQDVGAMTPVFFAFTDRQ 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 347 KIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLEWMPKRLDSYEKAALRNTILKGRSVGVAAYTAKEALEWGT 426
Cdd:PRK11742 321 KIYDVIEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLDEYEKAALRNSILKGRTQGVAAYNAKEALEWGV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 427 TGAGLRATGIDFDVRKWRPYSGYENFDFEVPTGGGvSDCYTRVMLKVEELRQSLRILQQCLDNMPEGPFKADHPLTTPPP 506
Cdd:PRK11742 401 TGAGLRATGIDFDVRKARPYSGYENFDFEVPVGGN-GDCYDRVMVKVEEMRQSLRIIEQCLDNMPEGPFKADHPLTTPPP 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 507 KERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPSFAHLQQIPSAIRGSLVSDL 586
Cdd:PRK11742 480 KERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVIRGSLVSDL 559
|
570
....*....|....*.
gi 839495796 587 IVYLGSIDFVMSDVDR 602
Cdd:PRK11742 560 IVYLGSIDFVMSDVDR 575
|
|
| NuoD |
TIGR01962 |
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ... |
216-602 |
0e+00 |
|
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898 Cd Length: 386 Bit Score: 671.36 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 216 DFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEMPYVLAVEK 295
Cdd:TIGR01962 1 EFMILNLGPQHPSTHGVLRLILELDGEYVVRADPHIGYLHRGTEKLAENRTYQQYIPYTDRLDYLSPFSNELAYCLAVEK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 296 LAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLP 375
Cdd:TIGR01962 81 LLGIEVPRRAQVIRVMLSELNRISSHLLFIGTHALDLGAMTPFLYAFREREKILDLFEAITGARMHSAYFRIGGVALDLP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 376 RGWDRLLREFLEWMPKRLDSYEKAALRNTILKGRSVGVAAYTAKEALEWGTTGAGLRATGIDFDVRKWRPYSGYENFDFE 455
Cdd:TIGR01962 161 ENWLEEIREFLEQFPKRLRDYETLLNENRIWKQRTQGVGVVSAKDALDWGLTGPMLRGSGIDWDIRKSEPYEGYDEYDFD 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 456 VPTGGGVsDCYTRVMLKVEELRQSLRILQQCLDNMPEGPFKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANES 535
Cdd:TIGR01962 241 VPVGGNG-DCYDRYLLRVLEMRESIKIIEQCLEKMPPGPIKADNPKLAPPPKERMLTSMEALIHHFKLVTEGFRVPAGEV 319
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 839495796 536 FQMIEATKGINSYYLTSDGSTMSYRTRVRTPSFAHLQQIPSAIRGSLVSDLIVYLGSIDFVMSDVDR 602
Cdd:TIGR01962 320 YVPIESPKGELGFYIISDGGTKPYRLKIRAPSFAHLQALEAMCVGHYLADLIAILGSIDPVMGEVDR 386
|
|
| NuoD |
COG0649 |
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ... |
213-602 |
0e+00 |
|
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain] Cd Length: 390 Bit Score: 657.14 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 213 DNEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEMPYVLA 292
Cdd:COG0649 2 LETEEMVLNMGPQHPSTHGVLRLVLELDGETVVDADPHIGYLHRGFEKLAENRTYTQIIPYTDRLDYLSPMNNELAYVLA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 293 VEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAH 372
Cdd:COG0649 82 VEKLLGIEVPERAQYIRVILAELNRIASHLLWLGTYALDLGAMTPFLYAFREREKILDLFEEVTGARMTHNYFRIGGVRR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 373 DLPRGWDRLLREFLEWMPKRLDSYEKAALRNTILKGRSVGVAAYTAKEALEWGTTGAGLRATGIDFDVRKWRPYSGYENF 452
Cdd:COG0649 162 DLPDGFLEKVREFLDYFPKRLDEYEDLLTGNRIFKARTKGVGVLSAEDAIALGVTGPVLRASGVDYDLRKDEPYSGYDEL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 453 DFEVPTGGGvSDCYTRVMLKVEELRQSLRILQQCLDNMPEGPFKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPA 532
Cdd:COG0649 242 DFDVPVGTE-GDCYDRYLVRMEEMRQSLRIIRQCLDKLPEGPVMAKDPKIAPPPKEEMKTSMEALIHHFKLVTEGFKVPA 320
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 533 NESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPSFAHLQQIPSAIRGSLVSDLIVYLGSIDFVMSDVDR 602
Cdd:COG0649 321 GEVYAAVESPRGELGFYLVSDGGTKPYRVKIRSPSFANLQALPEMLKGHMLADVVAILGSLDIVLGEVDR 390
|
|
| Complex1_49kDa |
pfam00346 |
Respiratory-chain NADH dehydrogenase, 49 Kd subunit; |
332-602 |
1.38e-154 |
|
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772 Cd Length: 270 Bit Score: 444.52 E-value: 1.38e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 332 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLEWMPKRLDSYEKAALRNTILKGRSV 411
Cdd:pfam00346 1 LGAMTPFLYAFREREKILDLFERITGARMTHSYFRPGGVARDLPEGFLEKIREFLDYFPKRLDEYEDLLTRNRIFKDRTK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 412 GVAAYTAKEALEWGTTGAGLRATGIDFDVRKWRPYSGYENFDFEVPTGGGvSDCYTRVMLKVEELRQSLRILQQCLDNMP 491
Cdd:pfam00346 81 GVGVLSAEDALALGVTGPMLRASGVPWDLRKDEPYSGYDELDFDVPVGTE-GDCYDRYLVRMEEMRQSLRIIRQCLDKLP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 492 EGPFKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPSFAHL 571
Cdd:pfam00346 160 EGPVMADDPKIALPPKEEMKTSMEALIHHFKLVTEGFRVPAGEVYVAVEAPKGELGFYLVSDGGTKPYRVKIRAPSFANL 239
|
250 260 270
....*....|....*....|....*....|.
gi 839495796 572 QQIPSAIRGSLVSDLIVYLGSIDFVMSDVDR 602
Cdd:pfam00346 240 QALPEMCKGHMLADVVAIIGSIDIVMGEVDR 270
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11742 |
PRK11742 |
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional |
27-602 |
0e+00 |
|
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
Pssm-ID: 236965 [Multi-domain] Cd Length: 575 Bit Score: 1375.39 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 27 VIGELRNRFGPDAFTVQPTRTGVPVVWVKREQLLEVGDFLKKLPKPYVMLFDLHGMDERLRTHRDGLPAADFSVFYHLIS 106
Cdd:PRK11742 1 VIGELRNRFGPDAFTVQATRTGIPVVWVKREQLLEVLRFLRKLPKPYVMLFDLHGIDERLRTHREGLPAADFTVFYHLIS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 107 IDRNRDIMLKVALSENDLHLPTFTKLFPNANWYERETWEMFGITFDGHPNLRRIMMPPTWEGHPLRKDYPARATEFDPFE 186
Cdd:PRK11742 81 IERNRDIMLKVALSENDLHVPTITKIFPNANWYERETWDMFGITFDGHPHLRRILMPPTWEGHPLRKDYPARATEFDPFE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 187 LTKAKQDLEMEALTFKPEEWGMKRGTDNEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQS 266
Cdd:PRK11742 161 LTKAKQDLEMEALRFKPEEWGMKRGTDNEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 267 WHSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQ 346
Cdd:PRK11742 241 WHSYIPYTDRIDYLGGCMNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYIGTFIQDVGAMTPVFFAFTDRQ 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 347 KIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLEWMPKRLDSYEKAALRNTILKGRSVGVAAYTAKEALEWGT 426
Cdd:PRK11742 321 KIYDVIEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLDEYEKAALRNSILKGRTQGVAAYNAKEALEWGV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 427 TGAGLRATGIDFDVRKWRPYSGYENFDFEVPTGGGvSDCYTRVMLKVEELRQSLRILQQCLDNMPEGPFKADHPLTTPPP 506
Cdd:PRK11742 401 TGAGLRATGIDFDVRKARPYSGYENFDFEVPVGGN-GDCYDRVMVKVEEMRQSLRIIEQCLDNMPEGPFKADHPLTTPPP 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 507 KERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPSFAHLQQIPSAIRGSLVSDL 586
Cdd:PRK11742 480 KERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVIRGSLVSDL 559
|
570
....*....|....*.
gi 839495796 587 IVYLGSIDFVMSDVDR 602
Cdd:PRK11742 560 IVYLGSIDFVMSDVDR 575
|
|
| PRK13292 |
PRK13292 |
NADH-quinone oxidoreductase subunit B/C/D; |
29-602 |
0e+00 |
|
NADH-quinone oxidoreductase subunit B/C/D;
Pssm-ID: 183955 [Multi-domain] Cd Length: 788 Bit Score: 696.91 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 29 GELRNRFGpDAFTVQPTRTGVPVVWVKREQLLEVGDFLKK-LPKPYVMLFDLHGMDERLRTHRDGLPaaDFSVFYHLISI 107
Cdd:PRK13292 226 GELEGAFG-DDVRLDEGATDMLTYRCPPELVPEVLRHLKKrASSPFRRLEDLAAVDESCRRDREKFP--DFTVNYHLLSF 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 108 DRNRDIMLKVALSENDLHLPTFTKLFPNANWYERETWEMFGITFDGHPNLRRIMMPPTWEGHPLRKDYPARATEFDPFEL 187
Cdd:PRK13292 303 DTPGHVRIKTELRGRTPELPSATGVFPAANWYEREAFDMFGIRFAGHPNLRRILMPPDWEGHPLRKEHPFRATEMPPYTR 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 188 TKAKqdlemealTFKPEEWGMKRGTDNEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSW 267
Cdd:PRK13292 383 DDAR--------RLQPLPAGDFFDRVDEETLILNLGPQHPGTHGIIRFVLKLDGEEIVDMDSDIGYHHRGAEKIGERQHW 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 268 HSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQK 347
Cdd:PRK13292 455 NQFIPYTDRIDYLAGVQNNLAYVNSVETLCGIEVPDRAIYIRVMLSELFRIANHLVWLGTFAADVGAMTPVFYTFTDREK 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 348 IYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLEWMPKRLDSYEKAALRNTILKGRSVGVAAYTAKEALEWGTT 427
Cdd:PRK13292 535 IFDIVEMITGGRMHPAWFRIGGVAEDLPEGWKEAVEAFLRWFPGRLKEYEDLLTGNPIFKARLKGVGVITRDEAVEWGIS 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 428 GAGLRATGIDFDVRKWRPYSGYENFDFEVPTGGGvSDCYTRVMLKVEELRQSLRILQQCLDNMPEGPFKADHPLTTPPPK 507
Cdd:PRK13292 615 GPNLRACGLAWDLRKKMPYGGYDRFDFEVPTAEG-GDCYARYLVRMEEMRQSLRIVRQAAAGMPGGRWISDDYRYVLPQK 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 508 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPSFAHLQQIPSAIRGSLVSDLI 587
Cdd:PRK13292 694 RDTLKDIESLIHHFVNVTRGPAPPKGECYAAIEAPKGENGYFVVSDGLNIAYRMRIRTPSFPHIQALPLLSRGWLVADFL 773
|
570
....*....|....*
gi 839495796 588 VYLGSIDFVMSDVDR 602
Cdd:PRK13292 774 AIIGSIDFVLADLDR 788
|
|
| NuoD |
TIGR01962 |
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ... |
216-602 |
0e+00 |
|
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898 Cd Length: 386 Bit Score: 671.36 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 216 DFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEMPYVLAVEK 295
Cdd:TIGR01962 1 EFMILNLGPQHPSTHGVLRLILELDGEYVVRADPHIGYLHRGTEKLAENRTYQQYIPYTDRLDYLSPFSNELAYCLAVEK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 296 LAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLP 375
Cdd:TIGR01962 81 LLGIEVPRRAQVIRVMLSELNRISSHLLFIGTHALDLGAMTPFLYAFREREKILDLFEAITGARMHSAYFRIGGVALDLP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 376 RGWDRLLREFLEWMPKRLDSYEKAALRNTILKGRSVGVAAYTAKEALEWGTTGAGLRATGIDFDVRKWRPYSGYENFDFE 455
Cdd:TIGR01962 161 ENWLEEIREFLEQFPKRLRDYETLLNENRIWKQRTQGVGVVSAKDALDWGLTGPMLRGSGIDWDIRKSEPYEGYDEYDFD 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 456 VPTGGGVsDCYTRVMLKVEELRQSLRILQQCLDNMPEGPFKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANES 535
Cdd:TIGR01962 241 VPVGGNG-DCYDRYLLRVLEMRESIKIIEQCLEKMPPGPIKADNPKLAPPPKERMLTSMEALIHHFKLVTEGFRVPAGEV 319
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 839495796 536 FQMIEATKGINSYYLTSDGSTMSYRTRVRTPSFAHLQQIPSAIRGSLVSDLIVYLGSIDFVMSDVDR 602
Cdd:TIGR01962 320 YVPIESPKGELGFYIISDGGTKPYRLKIRAPSFAHLQALEAMCVGHYLADLIAILGSIDPVMGEVDR 386
|
|
| NuoD |
COG0649 |
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ... |
213-602 |
0e+00 |
|
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain] Cd Length: 390 Bit Score: 657.14 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 213 DNEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEMPYVLA 292
Cdd:COG0649 2 LETEEMVLNMGPQHPSTHGVLRLVLELDGETVVDADPHIGYLHRGFEKLAENRTYTQIIPYTDRLDYLSPMNNELAYVLA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 293 VEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAH 372
Cdd:COG0649 82 VEKLLGIEVPERAQYIRVILAELNRIASHLLWLGTYALDLGAMTPFLYAFREREKILDLFEEVTGARMTHNYFRIGGVRR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 373 DLPRGWDRLLREFLEWMPKRLDSYEKAALRNTILKGRSVGVAAYTAKEALEWGTTGAGLRATGIDFDVRKWRPYSGYENF 452
Cdd:COG0649 162 DLPDGFLEKVREFLDYFPKRLDEYEDLLTGNRIFKARTKGVGVLSAEDAIALGVTGPVLRASGVDYDLRKDEPYSGYDEL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 453 DFEVPTGGGvSDCYTRVMLKVEELRQSLRILQQCLDNMPEGPFKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPA 532
Cdd:COG0649 242 DFDVPVGTE-GDCYDRYLVRMEEMRQSLRIIRQCLDKLPEGPVMAKDPKIAPPPKEEMKTSMEALIHHFKLVTEGFKVPA 320
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 533 NESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPSFAHLQQIPSAIRGSLVSDLIVYLGSIDFVMSDVDR 602
Cdd:COG0649 321 GEVYAAVESPRGELGFYLVSDGGTKPYRVKIRSPSFANLQALPEMLKGHMLADVVAILGSLDIVLGEVDR 390
|
|
| PRK06075 |
PRK06075 |
NADH-quinone oxidoreductase subunit D; |
220-602 |
1.31e-168 |
|
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 180385 [Multi-domain] Cd Length: 392 Bit Score: 485.04 E-value: 1.31e-168
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 220 LNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGI 299
Cdd:PRK06075 9 LNFGPQHPAAHGVLRLILELDGEVVVRADPHIGYLHRGTEKLAEYRTYLQAIPYFDRLDYVSPMNNEHAYCLAVEKLLGI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 300 TVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWD 379
Cdd:PRK06075 89 EVPERAQYIRVLFLELNRILSHLLWLGTHALDLGAMTVFLWGFREREKLLDLYEAVTGARMHHAYIRPGGVRRDLPDGLL 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 380 RLLREFLEWMPKRLDSYEKAALRNTILKGRSVGVAAYTAKEALEWGTTGAGLRATGIDFDVRKWRPYSGYENFDFEVPTG 459
Cdd:PRK06075 169 EDIRDFLDYFPKRLDDYETLLTDNRIWKQRLVGVGVVSKERALALGFTGPMLRASGVAWDLRKSQPYEVYDELDFDVPVG 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 460 GGvSDCYTRVMLKVEELRQSLRILQQCLDNM--PEGPFKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANESFQ 537
Cdd:PRK06075 249 KN-GDCYDRYLVRVEEMRQSLRIIEQCLDRLrpPPGPVMVDDPKIAPPARLEMKTSMEALIHHFKLVTEGFRVPAGEVYA 327
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 839495796 538 MIEATKGINSYYLTSDGSTMSYRTRVRTPSFAHLQQIPSAIRGSLVSDLIVYLGSIDFVMSDVDR 602
Cdd:PRK06075 328 AVESPKGEFGVYLVSDGGNKPYRVKIRAPSFAHLQALDEMCRGHMLADVVAIIGSLDIVFGEVDR 392
|
|
| Complex1_49kDa |
pfam00346 |
Respiratory-chain NADH dehydrogenase, 49 Kd subunit; |
332-602 |
1.38e-154 |
|
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772 Cd Length: 270 Bit Score: 444.52 E-value: 1.38e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 332 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLEWMPKRLDSYEKAALRNTILKGRSV 411
Cdd:pfam00346 1 LGAMTPFLYAFREREKILDLFERITGARMTHSYFRPGGVARDLPEGFLEKIREFLDYFPKRLDEYEDLLTRNRIFKDRTK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 412 GVAAYTAKEALEWGTTGAGLRATGIDFDVRKWRPYSGYENFDFEVPTGGGvSDCYTRVMLKVEELRQSLRILQQCLDNMP 491
Cdd:pfam00346 81 GVGVLSAEDALALGVTGPMLRASGVPWDLRKDEPYSGYDELDFDVPVGTE-GDCYDRYLVRMEEMRQSLRIIRQCLDKLP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 492 EGPFKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPSFAHL 571
Cdd:pfam00346 160 EGPVMADDPKIALPPKEEMKTSMEALIHHFKLVTEGFRVPAGEVYVAVEAPKGELGFYLVSDGGTKPYRVKIRAPSFANL 239
|
250 260 270
....*....|....*....|....*....|.
gi 839495796 572 QQIPSAIRGSLVSDLIVYLGSIDFVMSDVDR 602
Cdd:pfam00346 240 QALPEMCKGHMLADVVAIIGSIDIVMGEVDR 270
|
|
| PRK12322 |
PRK12322 |
NADH-quinone oxidoreductase subunit D; |
218-602 |
1.51e-135 |
|
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 183437 [Multi-domain] Cd Length: 366 Bit Score: 399.85 E-value: 1.51e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 218 MFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEMPYVLAVEKLA 297
Cdd:PRK12322 7 MLLNVGPQHPSTHGVFRLVLKIDGEIIVEATPVIGYLHRGTEKLAESLQYTQIIPYTDRMDYLSAMTNNYVYCHAVETMM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 298 GITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRG 377
Cdd:PRK12322 87 GLEVPERAEYLRVIAMELGRIASHLVWWGTYLLDIGAVSPFLYAFREREMIINLLNELCGARLTFNYMRIGGVKWDAPDG 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 378 WDRLLREFLEWMPKRLDSYEKAALRNTILKGRSVGVAAYTAKEALEWGTTGAGLRATGIDFDVRKWRPYSGYENFDFEVP 457
Cdd:PRK12322 167 WIEKVKEFVPYMREQLAGYHDLVTGNEIFLNRVKGVGIYSAEEAISYSLSGVNLRCTGVNWDLRKDEPYSIYDRFDFDIP 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 458 TgGGVSDCYTRVMLKVEELRQSLRILQQCLDNMPE-GPFKADHPLTTPPPKertlqhietlithflqvswgpvmpaNESF 536
Cdd:PRK12322 247 V-GSVGDCWDRYVCRMQEIEQSLKIIEQAVEQFPKeGPVLAKVPKIIKAPK-------------------------GEAY 300
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 839495796 537 QMIEATKGINSYYLTSDGSTMSYRTRVRTPSFAHLQQIPSAIRGSLVSDLIVYLGSIDFVMSDVDR 602
Cdd:PRK12322 301 VRIESPRGEIGCYIASDGKKKPYRLKFRRPSFYNLQILPKLLKGENIANLIAILGSIDIVLGEVDG 366
|
|
| PRK07415 |
PRK07415 |
NAD(P)H-quinone oxidoreductase subunit H; Validated |
218-602 |
2.33e-109 |
|
NAD(P)H-quinone oxidoreductase subunit H; Validated
Pssm-ID: 180969 [Multi-domain] Cd Length: 394 Bit Score: 333.63 E-value: 2.33e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 218 MFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEMPYVLAVEKLA 297
Cdd:PRK07415 11 MVLNFGPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMYVPYVSRWDYAAGMFNEAITVNAPEKLA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 298 GITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRM-HPAWFRIGGVAHDLPR 376
Cdd:PRK07415 91 NIPVPKRASYIRVIMLELNRIANHLLWLGPFLADVGAQTPFFYIFREREMIYDLWEAATGQRLiNNNYFRIGGVAADLPY 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 377 GWDRLLREFLEWMPKRLDSYEKAALRNTILKGRSVGVAAYTAKEALEWGTTGAGLRATGIDFDVRKWRPYSGYENFDFEV 456
Cdd:PRK07415 171 GWLEKCLDFCDYFGPKIDEYEKLITNNPIFRRRIEGLGTISREEAINWGLSGPMLRASGVKWDLRKVDHYECYDDFDWDV 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 457 P--TGGgvsDCYTRVMLKVEELRQSLRILQQCLDNMPEGPF---KADHPLTTPPPKERTLQHietlitHFLQVSWGPV-- 529
Cdd:PRK07415 251 AweTEG---DCLARYRVRIEEMRESVKIIRQACKGIPGGPYenlEAKRMAEGKKSEWNGFDY------QYVAKKVAPTfk 321
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 839495796 530 MPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPSFAHLQQIPSAIRGSLVSDLIVYLGSIDFVMSDVDR 602
Cdd:PRK07415 322 IPNGELYVRLESGKGELGIFIQGNNDVTPWRWKIRAADFNNLQILPHLLKGAKVADIMAILGSIDVIMGSVDR 394
|
|
| ndhH |
CHL00017 |
NADH dehydrogenase subunit 7 |
208-602 |
1.29e-96 |
|
NADH dehydrogenase subunit 7
Pssm-ID: 176960 Cd Length: 393 Bit Score: 300.85 E-value: 1.29e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 208 MKRGTDNEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEM 287
Cdd:CHL00017 1 MTVPATRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 288 PYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRI 367
Cdd:CHL00017 81 ITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 368 GGVAHDLPRGW-DRLLrEFLEWMPKRLDSYEKAALRNTILKGRSVGVAAYTAKEALEWGTTGAGLRATGIDFDVRKWRPY 446
Cdd:CHL00017 161 GGVAADLPYGWiDKCL-DFCDYFLTGVAEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHY 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 447 SGYENFDFEVP--TGGgvsDCYTRVMLKVEELRQSLRILQQCLDNMPEGPFKADHPLTTPPPKERTLQHIEtliTHFLQV 524
Cdd:CHL00017 240 ECYDEFDWEVQwqKEG---DSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLEARRFDREKDSEWNDFE---YRFISK 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 525 SWGPV--MPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPSFAHLQQIPSAIRGSLVSDLIVYLGSIDFVMSDVDR 602
Cdd:CHL00017 314 KPSPTfeLSKQELYVRVEAPKGELGIFLIGDDSVFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
|
|
| HycE2 |
COG3261 |
Ni,Fe-hydrogenase III large subunit [Energy production and conversion]; |
82-602 |
1.02e-87 |
|
Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
Pssm-ID: 442492 [Multi-domain] Cd Length: 479 Bit Score: 280.32 E-value: 1.02e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 82 MDERLRTHRDGLPAADFsVFYHLISIDRNRDIMLKVALSENDLHLPTFTKLFPNANWYERETWEMFGITFDGHPNLRRIM 161
Cdd:COG3261 4 AALALLLALDLAAGGAL-FGLRLEAEDELLLLLLLAAGVLLLLPTPPPSSSAPAAAAARRERARERLGGEEGGGPPRRRL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 162 MPPTWEGH----PLRKDYPARATEFDPFEltkaKQDLEMEaltfkpeewGMKRGTdnedfmfLNLGPNHPSAH--GAFRi 235
Cdd:COG3261 83 LLPDGWPPlpppPLRPPPPPRGPPPPPPE----EPEMKVE---------GEGVHE-------IPVGPVHAGLIepGHFR- 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 236 iLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSEL 315
Cdd:COG3261 142 -FSVEGERILDLEIRLGYVHRGIEKLAEGRDYEQALYLAERICGICSVAHALAYCQAVEKAAGIEVPPRAQYLRVILLEL 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 316 FRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLEWMPKRLDS 395
Cdd:COG3261 221 ERIHSHLLDLGALANDVGFETLFMQCWRLRERVLDLNEALTGNRVLRGINVPGGVRRDLDPEQLKAILERLDELEEEVKE 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 396 YEKAALRNTILKGRSVGVAAYTAKEALEWGTTGAGLRATGIDFDVRKWRPYSGYENFDFEVPT-GGGvsDCYTRVMLKVE 474
Cdd:COG3261 301 LVDLFLNDPSVLDRLVGTGVLSKEDARDLGAVGPVARASGVDRDVRRDHPYAAYDELDFKVVTeTEG--DVYARALVRLE 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 475 ELRQSLRILQQCLDNMPEGPfkadhplttpppkertlqhietlithfLQVSWGPVMPANESFQMIEATKGINSYYLTSDG 554
Cdd:COG3261 379 EIFESLDLIRQALEKLPEGP---------------------------IRVPVPGLPPDGEGLGRVEAPRGELVHYVRTDG 431
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 839495796 555 STMSYRTRVRTPSFAHLQQIPSAIRGSLVSD--LIVylGSIDFVMSDVDR 602
Cdd:COG3261 432 DGRLERVKIRTPSFANWPALELALRGNIVADfpLIN--KSFDPCYSCTDR 479
|
|
| NuoC |
COG0852 |
NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; ... |
25-191 |
4.75e-59 |
|
NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440613 [Multi-domain] Cd Length: 164 Bit Score: 194.66 E-value: 4.75e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 25 DPVIGELRNRFGpDAFTVQPTRTGVPVVWVKREQLLEVGDFLKKlPKPYVMLFDLHGMDERLRTHRdglpaadFSVFYHL 104
Cdd:COG0852 5 EELLEALEEKFG-DAVLEVEEARGELTLTVPPEDLVDVARFLRD-DLGFDHLSDLTGVDYPERGDR-------FEVVYHL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 105 ISIDRNRDIMLKVALSENDLHLPTFTKLFPNANWYERETWEMFGITFDGHPNLRRIMMPPTWEGHPLRKDYPARATEFDP 184
Cdd:COG0852 76 LSLTHNRRLRLKVFVPRDDPVVPSVTDVWPGANWHEREAYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLEGYVEVR 155
|
....*..
gi 839495796 185 FELTKAK 191
Cdd:COG0852 156 YDEELKR 162
|
|
| NuoC_fam |
TIGR01961 |
NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH ... |
50-179 |
3.26e-57 |
|
NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and [Energy metabolism, Electron transport]
Pssm-ID: 273897 [Multi-domain] Cd Length: 121 Bit Score: 188.21 E-value: 3.26e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 50 PVVWVKREQLLEVGDFLKKLPKPYVMLFDLHGMDeRLRTHRdglpaadFSVFYHLISIDRNRDIMLKVALSENDlHLPTF 129
Cdd:TIGR01961 1 LVVWIKKEQLLEVLTFLKDPALGFELLTDVSGVD-YPKEKR-------FEVVYHLLSIKKNRRIRLKVRLSEDD-PVPSL 71
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 839495796 130 TKLFPNANWYERETWEMFGITFDGHPNLRRIMMPPTWEGHPLRKDYPARA 179
Cdd:TIGR01961 72 TSVFPTANWYERETYDMYGIVFDGHPDLRRILMPDDFEGHPLRKDYPLTG 121
|
|
| Complex1_30kDa |
pfam00329 |
Respiratory-chain NADH dehydrogenase, 30 Kd subunit; |
52-181 |
8.56e-52 |
|
Respiratory-chain NADH dehydrogenase, 30 Kd subunit;
Pssm-ID: 459763 [Multi-domain] Cd Length: 121 Bit Score: 173.82 E-value: 8.56e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 52 VWVKREQLLEVGDFLKKLPKPYVMLFDLHGMDERlrthrdglPAADFSVFYHLISIDRNRDIMLKVALsENDLHLPTFTK 131
Cdd:pfam00329 1 VTVDPEDLLEVARFLRDDELGFDHLSDLTGVDYP--------EEGRFEVVYHLLSITHNVRVRVKVPL-EDDPVVPSVTD 71
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 839495796 132 LFPNANWYERETWEMFGITFDGHPNLRRIMMPPTWEGHPLRKDYPARATE 181
Cdd:pfam00329 72 IWPGANWYEREVYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLTGYV 121
|
|
| PRK06074 |
PRK06074 |
NADH dehydrogenase subunit C; Provisional |
54-176 |
5.52e-36 |
|
NADH dehydrogenase subunit C; Provisional
Pssm-ID: 235691 [Multi-domain] Cd Length: 189 Bit Score: 133.11 E-value: 5.52e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 54 VKREQLLEVGDFLKKLPKP-YVMLFDLHGMDERLRTHRdglpaadFSVFYHLISIDRNRDIMLKVALSEnDLHLPTFTKL 132
Cdd:PRK06074 33 VPAEKILEVLTFLRDDPELrFEQLIDLTGVDYPERGKR-------FEVVYHLLSYKHNVRLRVKVRAPE-DPVVPSVVDI 104
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 839495796 133 FPNANWYERETWEMFGITFDGHPNLRRIMMPPTWEGHPLRKDYP 176
Cdd:PRK06074 105 WPSANWYEREAYDLYGIVFEGHPDLRRILTDYGFEGHPLRKDFP 148
|
|
| HycE1 |
COG3262 |
Ni,Fe-hydrogenase III component G [Energy production and conversion]; |
30-508 |
5.91e-34 |
|
Ni,Fe-hydrogenase III component G [Energy production and conversion];
Pssm-ID: 442493 [Multi-domain] Cd Length: 523 Bit Score: 135.85 E-value: 5.91e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 30 ELRNRFGPDAFTVQPTRTGVPVVWVKREQLLEVGDFLKKLPKPYVMLfdLHGMDERLRTHRdglpaadFSVFYHLISIDR 109
Cdd:COG3262 6 ELRARFGGSILERRWVRPNEVWVEVDREDLPELAEFLAEGGGGRLAA--LWGNDERELGGG-------FAVYYVFALEGE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 110 NRDIMLKVALSENDLHLPTFTKLFPNANWYERETWEMFGITFDGHPNLRRIMMPPTW-EG-HPLRKDYPAratefdpfel 187
Cdd:COG3262 77 GALVTLKVSVPKDDPVFPSITDLFPAASWYEREIRDLFGIVPEGHPDPRRLVLHDDWpEGiYPLRKDFKG---------- 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 188 tKAKQDLEMEALTFKPEEwgmkrgtdNEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSW 267
Cdd:COG3262 147 -GPRPAPAPAEEYFRPVE--------GEGIEVVVVGPVHAGIIEPGHFFFSVGGEIVIRLEELLYYVHKGEEKLEEGEEG 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 268 HSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQK 347
Cdd:COG3262 218 RAGLVLAEAAGGDSGAAAAAAAAAAAEAAAAAAIPPRAALLRLLRLLLERLELHLGLLGLGGLDAGGAGAAGAAALLRRR 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 348 IYDLVEAITGFRMHPAWFRIGGVAHDLPRG-------WDRLLREFLEWmpkrLDSYEKAALRNTILKGRSVGVAAYTAKE 420
Cdd:COG3262 298 LERLLEALLLRRGRRGGGGGGGGGRDDDDLladlileLLLDLEEEEEE----LEELADLLSRLIDRLDTTGGLALKAAAA 373
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 421 AlewGTTGAGLRATGIDFDVRKWRPYSGYENFDFEVPtGGGVSDCYTRVMLKVEELRQSLRILQQCLDNMPEGPFKADHP 500
Cdd:COG3262 374 G---GVGGAAGRASGGRGDRRRRAPYAAYDDVDLRVV-VLTVGDVDVRRARVREELEEISRLIIILLDLLLLGPGGLLVG 449
|
....*...
gi 839495796 501 LTTPPPKE 508
Cdd:COG3262 450 GEPAPAEG 457
|
|
| PRK07785 |
PRK07785 |
NADH dehydrogenase subunit C; Provisional |
53-176 |
5.43e-33 |
|
NADH dehydrogenase subunit C; Provisional
Pssm-ID: 181115 [Multi-domain] Cd Length: 235 Bit Score: 126.64 E-value: 5.43e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 53 WVKREQLLEVGDFLKKlpkpyvmlfdlhgmDERLR---------THRDGLPAADFSVFYHLISIDRNRDIMLKVALSEND 123
Cdd:PRK07785 94 HVRREHLVEVAQTLRD--------------DPALRfelclgvsgVHYPHDTGRELHAVYHLTSITHNRRIRLEVAVPDAD 159
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 839495796 124 LHLPTFTKLFPNANWYERETWEMFGITFDGHPNLRRIMMPPTWEGHPLRKDYP 176
Cdd:PRK07785 160 PHIPSLVSVYPTNDWHERETYDFFGIVFDGHPALTRIEMPDDWVGHPQRKDYP 212
|
|
| PRK12494 |
PRK12494 |
NAD(P)H-quinone oxidoreductase subunit J; |
48-175 |
2.27e-28 |
|
NAD(P)H-quinone oxidoreductase subunit J;
Pssm-ID: 183557 [Multi-domain] Cd Length: 172 Bit Score: 111.59 E-value: 2.27e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 48 GVPVVWVKREQLLEVGDFLKKLPKPYVMLfdLHGMDErlrthrdGlPAADFSVFYHLISI----DRNRDIMLKVALSEND 123
Cdd:PRK12494 39 GVEIIKVEPDFLLPIATALYAYGFNYLQC--QGGYDE-------G-PGKELVSFYHLIKVsdnaDKPREVRLKVFLPRDD 108
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 839495796 124 LHLPTFTKLFPNANWYERETWEMFGITFDGHPNLRRIMMPPTWEGHPLRKDY 175
Cdd:PRK12494 109 PRVPSVYWIWKGADWQERETYDMYGINFEGHPNLKRILMPEDWVGWPLRKDY 160
|
|
| PRK08491 |
PRK08491 |
NADH-quinone oxidoreductase subunit C; |
51-182 |
2.96e-28 |
|
NADH-quinone oxidoreductase subunit C;
Pssm-ID: 181449 Cd Length: 263 Bit Score: 114.00 E-value: 2.96e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 51 VVWVKREQLLEVGDFLKKLPkpYVMLFDLHGMDerLRTHRDGlpaadFSVFYHLISIDRNRDIMLKVALSENDlHLPTFT 130
Cdd:PRK08491 60 VIWIKKDDNFKVLKILKHLG--YECLSEMSAID--FLAKKGG-----FEVFYQLLSMSKRKRVRVKCFLKEKE-ALQSVS 129
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 839495796 131 KLFPNANWYERETWEMFGITFDGHPNLRRIMMPPTWEGHPLRKDYPARATEF 182
Cdd:PRK08491 130 FLFKSANWSEREMYDMFGIVINNHPYLKRILMPDDWVGHPLLKSYPLKGDEF 181
|
|
| PRK07735 |
PRK07735 |
NADH-quinone oxidoreductase subunit C; |
31-175 |
2.49e-25 |
|
NADH-quinone oxidoreductase subunit C;
Pssm-ID: 236081 [Multi-domain] Cd Length: 430 Bit Score: 108.91 E-value: 2.49e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 31 LRNRFGPDA---FTVQPTRTGVPVVWVKREQLLEVGDFLK---KLPKPYvmLFDLHGMDerLRTHRDglpaadfsVFYHL 104
Cdd:PRK07735 285 IKEKLGEDVledSYINKLSKDVPTLVVEPEKYYEVAELLRfheQLAFDY--LSELHGTD--FVTHME--------VYVHL 352
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 839495796 105 ISIDRNRDIMLKVALSENDLHLPTFTKLFPNANWYERETWEMFGITFDGHPNLRRIMMPPTWEGHPLRKDY 175
Cdd:PRK07735 353 YSYGKRQSVAVKVKLDREAPQVESVTPLWKGANWPEREAYDLLGIVFKGHPNLSRILLPDDWVGHPLRKDY 423
|
|
| ndhJ |
CHL00012 |
NADH dehydrogenase subunit J |
85-175 |
1.71e-18 |
|
NADH dehydrogenase subunit J
Pssm-ID: 176955 [Multi-domain] Cd Length: 158 Bit Score: 82.82 E-value: 1.71e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495796 85 RLRTHRDGLPAADFSVFYHLISIDRNRD----IMLKVALSENDLHLPTFTKLFPNANWYERETWEMFGITFDGHPNLRRI 160
Cdd:CHL00012 52 RSQCAYDVAPGGLLASVYHLTRIQYGVDqpeeVCIKVFVPRKNPRIPSVFWVWKSADFQERESYDMLGISYDNHPRLKRI 131
|
90
....*....|....*
gi 839495796 161 MMPPTWEGHPLRKDY 175
Cdd:CHL00012 132 LMPESWIGWPLRKDY 146
|
|
| |
