|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11278 |
PRK11278 |
NADH-quinone oxidoreductase subunit NuoF; |
1-445 |
0e+00 |
|
NADH-quinone oxidoreductase subunit NuoF;
Pssm-ID: 236891 [Multi-domain] Cd Length: 448 Bit Score: 1002.40 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 1 MKTVIRTAETHPLTWRLRDDKQPVWLDEYRSKNGYEGARKALTGMAPDEIVTAVKDAGLKGRGGAGFSTGLKWSLMPKDE 80
Cdd:PRK11278 2 MKNIIRTPETHPLTWRLRDDKQPVWLDEYRSKNGYEGARKALTGMSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 81 SMNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAQHLRRAIAEATEAGLLGKNI 160
Cdd:PRK11278 82 SMNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 161 LGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQNIS 240
Cdd:PRK11278 162 MGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNIS 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 241 T--SKDAGTKLMGFSGRVKNPGVWELPFGTTAREILEDYAGGMRDGLKFKAWQPGGAGTDFLTEAHLDLPMEFESIGKAG 318
Cdd:PRK11278 242 KgkSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGLKFKAWQPGGAGTDFLTEAHLDLPMEFESIGKAG 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 319 SRLGTSLAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFC 398
Cdd:PRK11278 322 SRLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFC 401
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 839495794 399 AHAPGAVEPLQSAIKYFREEFEAGIKQQFSNTHAINGIQPNLLKTRW 445
Cdd:PRK11278 402 AHAPGAVEPLQSAIKYFREEFEAGIKQPFSNTHLINGIQPNLLKERW 448
|
|
| nuoF_fam |
TIGR01959 |
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that ... |
12-423 |
0e+00 |
|
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport]
Pssm-ID: 131014 Cd Length: 411 Bit Score: 769.58 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 12 PLTWRLRDDkQPVWLDEYRSKNGYEGARKALTGMAPDEIVTAVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNA 91
Cdd:TIGR01959 1 VLTTNLDNP-ESWTLEEYEKRGGYDALRKALEEMSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKDDSPKPKYLVCNA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 92 DEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAQHLRRAIAEATEAGLLGKNILGTGFDFELFV 171
Cdd:TIGR01959 80 DESEPGTCKDRDLMEFDPHQLIEGMIIAAYAIGAHRGYIYIRGEFIKEAENLEAAIAEAYAAGLLGKNILGSGFDFELFV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 172 HTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISTSKDAGTKLMG 251
Cdd:TIGR01959 160 HRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKEKSPGTKLFS 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 252 FSGRVKNPGVWELPFGTTAREILEDYAGGMRDGLKFKAWQPGGAGTDFLT-EAHLDLPMEFESIGKAGSRLGTSLAMAVD 330
Cdd:TIGR01959 240 VSGHVNKPGNYELPLGTPLRELLEDYAGGMRGGWKLKAVIPGGSSTPVLPaEQHLDAPMDYDSLAAAGSMLGTGAVIVMD 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 331 HEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGpGKTFCAHAPGAVEPLQS 410
Cdd:TIGR01959 320 ESTCMVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILERIEEGEGTKEDIDLLLSVCKQIE-GKTICALGDAAAWPVQS 398
|
410
....*....|...
gi 839495794 411 AIKYFREEFEAGI 423
Cdd:TIGR01959 399 AIKHFRDEFEAHI 411
|
|
| NuoF |
COG1894 |
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and ... |
8-426 |
0e+00 |
|
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and conversion]; NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 441498 [Multi-domain] Cd Length: 418 Bit Score: 734.12 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 8 AETHPLTWRLRDDKQPVWLDEYRSKNGYEGARKALTGMAPDEIVTAVKDAGLKGRGGAGFSTGLKWSLMPKDESmNIRYL 87
Cdd:COG1894 1 KKQTRVLLRNCGIIDPESLEDYIARGGYQALRKALTEMTPEEVIEEVKDSGLRGRGGAGFPTGLKWSFVPKAPG-DPKYL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 88 LCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAQHLRRAIAEATEAGLLGKNILGTGFDF 167
Cdd:COG1894 80 VCNADEGEPGTFKDRSLLEGDPHQLIEGMIIAAYAIGATKGYIYIRGEYPLAIERLEKAIEEAREAGLLGKNILGSGFDF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISTSKDAGT 247
Cdd:COG1894 160 DIEVHRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVSGLWGKPTVVNNVETLANVPHIIRNGAEWFASIGTEKSKGT 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 248 KLMGFSGRVKNPGVWELPFGTTAREILEDYAGGMRDGLKFKAWQPGGAGTDFLTEAHLDLPMEFESIGKAGSRLGTSLAM 327
Cdd:COG1894 240 KLFSLSGHVKNPGLYEVPMGTTLRELIYDIGGGIRGGRKLKAVQPGGPSGGCLPAEHLDTPMDYESLAAAGSMLGSGGMI 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 328 AVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGpGKTFCAHAPGAVEP 407
Cdd:COG1894 320 VMDETTCMVDVARFFLEFYAHESCGKCTPCREGTGWMLEILDRIEAGEGTEEDLDLLEDLADTIK-GTSLCALGDAAPNP 398
|
410
....*....|....*....
gi 839495794 408 LQSAIKYFREEFEAGIKQQ 426
Cdd:COG1894 399 VLSTLKYFRDEFEAHIKDK 417
|
|
| Complex1_51K |
pfam01512 |
Respiratory-chain NADH dehydrogenase 51 Kd subunit; |
54-226 |
4.25e-66 |
|
Respiratory-chain NADH dehydrogenase 51 Kd subunit;
Pssm-ID: 460237 [Multi-domain] Cd Length: 150 Bit Score: 208.52 E-value: 4.25e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 54 VKDAGLKGRGGAGFSTGLKWSLMPKDEsmnIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLR 133
Cdd:pfam01512 1 VKEAGIVGRGGAGFPTHVKLSPPPKKK---IKYLIVNGAECEPGLTKDRRLMRERPHEIIEGIKIAAYALGAKRGVIGIR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 134 GEYIEAAQHLRRAIAEATEAGllgknilgtgfdFELFVHTGAGRYICGEETALINSLEGRRaNPRSKPpfPASSGVwgkp 213
Cdd:pfam01512 78 DEKPEAIAALEKAIAEARAAG------------FDIEVHRGAGAYPCGEEKALIYSLTGRG-VPRGKP--PADVGV---- 138
|
170
....*....|...
gi 839495794 214 tCVNNVETLCNVP 226
Cdd:pfam01512 139 -VVNNVETLAAVP 150
|
|
| NADH_4Fe-4S |
smart00928 |
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; |
336-381 |
2.98e-19 |
|
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
Pssm-ID: 197996 [Multi-domain] Cd Length: 46 Bit Score: 80.65 E-value: 2.98e-19
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 839495794 336 VSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDI 381
Cdd:smart00928 1 VDAARRLMEFYAHESCGKCTPCREGTGWLLEILDRIEEGEGTEEDL 46
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11278 |
PRK11278 |
NADH-quinone oxidoreductase subunit NuoF; |
1-445 |
0e+00 |
|
NADH-quinone oxidoreductase subunit NuoF;
Pssm-ID: 236891 [Multi-domain] Cd Length: 448 Bit Score: 1002.40 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 1 MKTVIRTAETHPLTWRLRDDKQPVWLDEYRSKNGYEGARKALTGMAPDEIVTAVKDAGLKGRGGAGFSTGLKWSLMPKDE 80
Cdd:PRK11278 2 MKNIIRTPETHPLTWRLRDDKQPVWLDEYRSKNGYEGARKALTGMSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 81 SMNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAQHLRRAIAEATEAGLLGKNI 160
Cdd:PRK11278 82 SMNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 161 LGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQNIS 240
Cdd:PRK11278 162 MGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNIS 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 241 T--SKDAGTKLMGFSGRVKNPGVWELPFGTTAREILEDYAGGMRDGLKFKAWQPGGAGTDFLTEAHLDLPMEFESIGKAG 318
Cdd:PRK11278 242 KgkSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGLKFKAWQPGGAGTDFLTEAHLDLPMEFESIGKAG 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 319 SRLGTSLAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFC 398
Cdd:PRK11278 322 SRLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFC 401
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 839495794 399 AHAPGAVEPLQSAIKYFREEFEAGIKQQFSNTHAINGIQPNLLKTRW 445
Cdd:PRK11278 402 AHAPGAVEPLQSAIKYFREEFEAGIKQPFSNTHLINGIQPNLLKERW 448
|
|
| nuoF_fam |
TIGR01959 |
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that ... |
12-423 |
0e+00 |
|
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport]
Pssm-ID: 131014 Cd Length: 411 Bit Score: 769.58 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 12 PLTWRLRDDkQPVWLDEYRSKNGYEGARKALTGMAPDEIVTAVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNA 91
Cdd:TIGR01959 1 VLTTNLDNP-ESWTLEEYEKRGGYDALRKALEEMSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKDDSPKPKYLVCNA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 92 DEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAQHLRRAIAEATEAGLLGKNILGTGFDFELFV 171
Cdd:TIGR01959 80 DESEPGTCKDRDLMEFDPHQLIEGMIIAAYAIGAHRGYIYIRGEFIKEAENLEAAIAEAYAAGLLGKNILGSGFDFELFV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 172 HTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISTSKDAGTKLMG 251
Cdd:TIGR01959 160 HRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKEKSPGTKLFS 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 252 FSGRVKNPGVWELPFGTTAREILEDYAGGMRDGLKFKAWQPGGAGTDFLT-EAHLDLPMEFESIGKAGSRLGTSLAMAVD 330
Cdd:TIGR01959 240 VSGHVNKPGNYELPLGTPLRELLEDYAGGMRGGWKLKAVIPGGSSTPVLPaEQHLDAPMDYDSLAAAGSMLGTGAVIVMD 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 331 HEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGpGKTFCAHAPGAVEPLQS 410
Cdd:TIGR01959 320 ESTCMVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILERIEEGEGTKEDIDLLLSVCKQIE-GKTICALGDAAAWPVQS 398
|
410
....*....|...
gi 839495794 411 AIKYFREEFEAGI 423
Cdd:TIGR01959 399 AIKHFRDEFEAHI 411
|
|
| NuoF |
COG1894 |
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and ... |
8-426 |
0e+00 |
|
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and conversion]; NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 441498 [Multi-domain] Cd Length: 418 Bit Score: 734.12 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 8 AETHPLTWRLRDDKQPVWLDEYRSKNGYEGARKALTGMAPDEIVTAVKDAGLKGRGGAGFSTGLKWSLMPKDESmNIRYL 87
Cdd:COG1894 1 KKQTRVLLRNCGIIDPESLEDYIARGGYQALRKALTEMTPEEVIEEVKDSGLRGRGGAGFPTGLKWSFVPKAPG-DPKYL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 88 LCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAQHLRRAIAEATEAGLLGKNILGTGFDF 167
Cdd:COG1894 80 VCNADEGEPGTFKDRSLLEGDPHQLIEGMIIAAYAIGATKGYIYIRGEYPLAIERLEKAIEEAREAGLLGKNILGSGFDF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISTSKDAGT 247
Cdd:COG1894 160 DIEVHRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVSGLWGKPTVVNNVETLANVPHIIRNGAEWFASIGTEKSKGT 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 248 KLMGFSGRVKNPGVWELPFGTTAREILEDYAGGMRDGLKFKAWQPGGAGTDFLTEAHLDLPMEFESIGKAGSRLGTSLAM 327
Cdd:COG1894 240 KLFSLSGHVKNPGLYEVPMGTTLRELIYDIGGGIRGGRKLKAVQPGGPSGGCLPAEHLDTPMDYESLAAAGSMLGSGGMI 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 328 AVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGpGKTFCAHAPGAVEP 407
Cdd:COG1894 320 VMDETTCMVDVARFFLEFYAHESCGKCTPCREGTGWMLEILDRIEAGEGTEEDLDLLEDLADTIK-GTSLCALGDAAPNP 398
|
410
....*....|....*....
gi 839495794 408 LQSAIKYFREEFEAGIKQQ 426
Cdd:COG1894 399 VLSTLKYFRDEFEAHIKDK 417
|
|
| PRK13596 |
PRK13596 |
NADH-quinone oxidoreductase subunit NuoF; |
40-431 |
1.57e-143 |
|
NADH-quinone oxidoreductase subunit NuoF;
Pssm-ID: 237441 Cd Length: 433 Bit Score: 416.68 E-value: 1.57e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 40 KALTGMAPDEIVTAVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLIS 119
Cdd:PRK13596 33 KAILDKGRDWIIEEMKASGLRGRGGAGFPTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDILRHDPHKLIEGCLIA 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 120 AFALKAYRGYIFLRGEYIEAAQHLRRAIAEATEAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRS 199
Cdd:PRK13596 113 SFAMGAHAAYIYIRGEFIREREALQAAIDEAYEAGLIGKNACGSGWDFDIYVHHGAGAYICGEETALLESLEGKKGQPRL 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 200 KPPFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISTSKDAGTKLMGFSGRVKNPGVWELPFGTTAREILEDYAG 279
Cdd:PRK13596 193 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAAWFASIGRPNNTGTKLFCISGHVNKPCNVEEAMGIPFRELIEKHAG 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 280 GMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTSLAMAVDHEINMVSLVRNLEEFFARESCGWCTPC 357
Cdd:PRK13596 273 GVRGGWDnLLAVIPGGSSVPLIPAEQCeDAIMDFDSLRAVGSGLGTAAVIVMDKSTDIIKAIARLSYFYKHESCGQCTPC 352
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 839495794 358 RDGLPWSVKILRALERGEGQPGDIETLEQLCRFLgPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQQFSNTH 431
Cdd:PRK13596 353 REGTGWMWRVMERMVKGRAQKREIDMLLDVTKQI-EGHTICALGDAAAWPIQGLIRHFRPEIEERIDQYTANAH 425
|
|
| PTZ00304 |
PTZ00304 |
NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional |
27-439 |
3.58e-125 |
|
NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional
Pssm-ID: 185547 [Multi-domain] Cd Length: 461 Bit Score: 371.04 E-value: 3.58e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 27 DEYRSKNgyegarkaLTGMAPDEIVTAVKDAGLKGRGGAGFSTGLKWSLMPKDESMN-IRYLLCNADEMEPGTYKDRLLM 105
Cdd:PTZ00304 48 DWYRTKD--------ILLKGHDWIIDEIKKSGLRGRGGAGFPSGLKWSFMPKVKPDGrPSYLVVNADESEPGTCKDREIM 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 106 EQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAQHLRRAIAEATEAGLLGKNILGTGFDFELFVHTGAGRYICGEETA 185
Cdd:PTZ00304 120 RHDPHKLVEGALLAGFAMRARAAYIYIRGEFYNEARALQQAIDEAYKKGFLGKNACGSGYDFDVYVHRGAGAYICGEETA 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 186 LINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISTSKDAGTKLMGFSGRVKNPGVWELP 265
Cdd:PTZ00304 200 LIESIEGKPGKPRLKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPQWFASFGRPNNAGTKLFCISGHVNNPCTVEEE 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 266 FGTTAREILEDYAGGMRDGL-KFKAWQPGGAGTDFLTEAHLD-LPMEFESIGKAGSRLGTSLAMAVDHEINMVSLVRNLE 343
Cdd:PTZ00304 280 MSIPLRELIERHCGGVRGGWdNLLCVIPGGSSVPLIPKEICDnVLMDFDALKEVQSGLGTAAVIVMDKSTDIIDAILRLS 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 344 EFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLgPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 423
Cdd:PTZ00304 360 KFYKHESCGQCTPCREGTPWLVKMMERFVVGNADKEEIDTLEEVSKQI-EGHTICALGDAAAWPVQGLIRHFRPEIEERI 438
|
410
....*....|....*..
gi 839495794 424 KQ-QFSNTHAINGIQPN 439
Cdd:PTZ00304 439 ERyWEANPHWGKSGSPW 455
|
|
| PLN03132 |
PLN03132 |
NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional |
40-426 |
5.72e-124 |
|
NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Pssm-ID: 178678 [Multi-domain] Cd Length: 461 Bit Score: 368.04 E-value: 5.72e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 40 KALTGMAPDEIVTAVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLIS 119
Cdd:PLN03132 64 KDLVLKGPDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIA 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 120 AFALKAYRGYIFLRGEYIEAAQHLRRAIAEATEAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRS 199
Cdd:PLN03132 144 GVGMRARAAYIYIRGEYVNERLNLERARHEAYAAGLLGKNACGSGYDFDVYIHYGAGAYICGEETALLESLEGKQGKPRL 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 200 KPPFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISTSKDAGTKLMGFSGRVKNPGVWELPFGTTAREILEDYAG 279
Cdd:PLN03132 224 KPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNAGTKLFCISGHVNKPCTVEEEMSIPLKELIERHCG 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 280 GMRDGL-KFKAWQPGGAGTDFLTEAHLD-LPMEFESIGKAGSRLGTSLAMAVDHEINMVSLVRNLEEFFARESCGWCTPC 357
Cdd:PLN03132 304 GVRGGWdNLLAIIPGGSSVPLLPKKICDdVLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPC 383
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 839495794 358 RDGLPWSVKILRALERGEGQPGDIETLEQLCRFLgPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQQ 426
Cdd:PLN03132 384 REGTGWLWDIMERMKVGNAKLEEIDMLQEVTKQI-EGHTICALGDAAAWPVQGLIRHFRPELERRIKER 451
|
|
| Complex1_51K |
pfam01512 |
Respiratory-chain NADH dehydrogenase 51 Kd subunit; |
54-226 |
4.25e-66 |
|
Respiratory-chain NADH dehydrogenase 51 Kd subunit;
Pssm-ID: 460237 [Multi-domain] Cd Length: 150 Bit Score: 208.52 E-value: 4.25e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 54 VKDAGLKGRGGAGFSTGLKWSLMPKDEsmnIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLR 133
Cdd:pfam01512 1 VKEAGIVGRGGAGFPTHVKLSPPPKKK---IKYLIVNGAECEPGLTKDRRLMRERPHEIIEGIKIAAYALGAKRGVIGIR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 134 GEYIEAAQHLRRAIAEATEAGllgknilgtgfdFELFVHTGAGRYICGEETALINSLEGRRaNPRSKPpfPASSGVwgkp 213
Cdd:pfam01512 78 DEKPEAIAALEKAIAEARAAG------------FDIEVHRGAGAYPCGEEKALIYSLTGRG-VPRGKP--PADVGV---- 138
|
170
....*....|...
gi 839495794 214 tCVNNVETLCNVP 226
Cdd:pfam01512 139 -VVNNVETLAAVP 150
|
|
| NADH_4Fe-4S |
pfam10589 |
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; |
338-421 |
7.92e-38 |
|
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
Pssm-ID: 463160 [Multi-domain] Cd Length: 85 Bit Score: 132.22 E-value: 7.92e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 338 LVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGpGKTFCAHAPGAVEPLQSAIKYFRE 417
Cdd:pfam10589 2 VARRFLEFYAHESCGKCTPCREGTKWLAEILERIVDGEGTEEDLDLLEELARTIK-GRSLCGLGDGAANPVLSALRYFRD 80
|
....
gi 839495794 418 EFEA 421
Cdd:pfam10589 81 EFEA 84
|
|
| NADH_4Fe-4S |
smart00928 |
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; |
336-381 |
2.98e-19 |
|
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
Pssm-ID: 197996 [Multi-domain] Cd Length: 46 Bit Score: 80.65 E-value: 2.98e-19
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 839495794 336 VSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDI 381
Cdd:smart00928 1 VDAARRLMEFYAHESCGKCTPCREGTGWLLEILDRIEEGEGTEEDL 46
|
|
| RnfC |
COG4656 |
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and ... |
45-283 |
3.24e-19 |
|
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase
Pssm-ID: 443694 [Multi-domain] Cd Length: 451 Bit Score: 89.43 E-value: 3.24e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 45 MAPDEIVTAVKDAGLKGRGGAGFSTGLKWSLMPKDEsmnIRYLLCNADEMEPG-TYKDRLLMEQlPHLLVEGMLISAFAL 123
Cdd:COG4656 119 LSPEEIIERIREAGIVGLGGAGFPTHVKLSPPPDKK---IDTLIINGAECEPYlTCDDRLMRER-AEEIIEGIRILMKAL 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 124 KAYRGYIFLRGEYIEAAQHLRRAIAEATeagllgknilgtgfDFElfVHTGAGRYICGEETALINSLEGRRANPRSkppF 203
Cdd:COG4656 195 GAKKVIIGIEDNKPEAIAALRKALAGDD--------------DIE--VVVLPTKYPQGGEKQLIKALTGREVPSGG---L 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 204 PASSGVwgkptCVNNVETLCNVpailangvewYQNISTSK-----------DAgtklmgfsgrVKNPGVWELPFGTTARE 272
Cdd:COG4656 256 PADVGV-----VVQNVGTAYAI----------YRAVRDGKpliervvtvtgDA----------VKEPGNLLVRIGTPVSD 310
|
250
....*....|.
gi 839495794 273 ILEdYAGGMRD 283
Cdd:COG4656 311 LLE-QAGGFKE 320
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
47-150 |
9.59e-06 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 48.02 E-value: 9.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 839495794 47 PDEIVTAVKDAGLKGRGGAGFSTGLKWSLMPKDesmnIRYLLCNADEMEPG-TYKDRLLMEQlPHLLVEGMLISAFALKA 125
Cdd:PRK05035 127 PEELIERIRQAGIAGLGGAGFPTAVKLQPGGDK----IETLIINGAECEPYiTADDRLMRER-ADEIIEGIRILAHLLQP 201
|
90 100
....*....|....*....|....*
gi 839495794 126 YRGYIFLRGEYIEAAQHLRRAIAEA 150
Cdd:PRK05035 202 KEVLIGIEDNKPEAIAALRAALAGA 226
|
|
| SLBB |
pfam10531 |
SLBB domain; |
253-284 |
4.05e-04 |
|
SLBB domain;
Pssm-ID: 463136 [Multi-domain] Cd Length: 56 Bit Score: 38.42 E-value: 4.05e-04
10 20 30
....*....|....*....|....*....|..
gi 839495794 253 SGRVKNPGVWELPFGTTAREILEdYAGGMRDG 284
Cdd:pfam10531 5 TGEVKRPGNYEVPIGTTLSDLIE-LAGGFTDD 35
|
|
| |
