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Conserved domains on  [gi|818816153|gb|KKU55200|]
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hypothetical protein UX78_C0024G0009 [Candidatus Amesbacteria bacterium GW2011_GWA2_47_11]

Protein Classification

Tfp pilus assembly protein FimT/FimU( domain architecture ID 11471961)

Tfp pilus assembly protein FimT/FimU

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FimT COG4970
Type IV pilus assembly protein FimT [Cell motility, Extracellular structures];
1-53 3.05e-08

Type IV pilus assembly protein FimT [Cell motility, Extracellular structures];


:

Pssm-ID: 443996 [Multi-domain]  Cd Length: 73  Bit Score: 47.92  E-value: 3.05e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 818816153   1 MRNKPALTLIELVLVVTIVSILATAGVLGMFTIRSKQALELSAENLAGAFKQA 53
Cdd:COG4970    5 RRRQRGFTLIELLVVLAILAILAAIAVPSFSSLIARQRLRAAANELAAALRLA 57
 
Name Accession Description Interval E-value
FimT COG4970
Type IV pilus assembly protein FimT [Cell motility, Extracellular structures];
1-53 3.05e-08

Type IV pilus assembly protein FimT [Cell motility, Extracellular structures];


Pssm-ID: 443996 [Multi-domain]  Cd Length: 73  Bit Score: 47.92  E-value: 3.05e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 818816153   1 MRNKPALTLIELVLVVTIVSILATAGVLGMFTIRSKQALELSAENLAGAFKQA 53
Cdd:COG4970    5 RRRQRGFTLIELLVVLAILAILAAIAVPSFSSLIARQRLRAAANELAAALRLA 57
PRK10506 PRK10506
prepilin peptidase-dependent protein;
1-46 3.56e-04

prepilin peptidase-dependent protein;


Pssm-ID: 236704 [Multi-domain]  Cd Length: 162  Bit Score: 38.44  E-value: 3.56e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 818816153   1 MRNKPALTLIELVLVVTIVSILATAGVLGMFTIRSKQALELSAENL 46
Cdd:PRK10506   5 MKKQRGYTLIELLVVMTIVSILSAWGLYGWQRWQQRQRLWQTAQQL 50
 
Name Accession Description Interval E-value
FimT COG4970
Type IV pilus assembly protein FimT [Cell motility, Extracellular structures];
1-53 3.05e-08

Type IV pilus assembly protein FimT [Cell motility, Extracellular structures];


Pssm-ID: 443996 [Multi-domain]  Cd Length: 73  Bit Score: 47.92  E-value: 3.05e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 818816153   1 MRNKPALTLIELVLVVTIVSILATAGVLGMFTIRSKQALELSAENLAGAFKQA 53
Cdd:COG4970    5 RRRQRGFTLIELLVVLAILAILAAIAVPSFSSLIARQRLRAAANELAAALRLA 57
PulG COG2165
Type II secretory pathway, pseudopilin PulG [Cell motility, Intracellular trafficking, ...
 1-53 1.14e-06

Type II secretory pathway, pseudopilin PulG [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 441768 [Multi-domain]  Cd Length: 99  Bit Score: 44.52  E-value: 1.14e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 818816153   1 MRNKPALTLIELVLVVTIVSILAtAGVLGMFTIRSKQALELSAENLAGAFKQA 53
Cdd:COG2165    7 RRRQRGFTLIELLVVIAIIGILA-ALALPALQGARERARRAELRSNLRQIQQA 58
PRK10506 PRK10506
prepilin peptidase-dependent protein;
1-46 3.56e-04

prepilin peptidase-dependent protein;


Pssm-ID: 236704 [Multi-domain]  Cd Length: 162  Bit Score: 38.44  E-value: 3.56e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 818816153   1 MRNKPALTLIELVLVVTIVSILATAGVLGMFTIRSKQALELSAENL 46
Cdd:PRK10506   5 MKKQRGYTLIELLVVMTIVSILSAWGLYGWQRWQQRQRLWQTAQQL 50
PilA COG4969
Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];
1-53 1.40e-03

Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];


Pssm-ID: 443995 [Multi-domain]  Cd Length: 134  Bit Score: 36.61  E-value: 1.40e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 818816153   1 MRNKPA-LTLIELVLVVTIVSILATAGVLGM--FTIRSKQAlelSAENLAGAFKQA 53
Cdd:COG4969    1 MKKKQKgFTLIELMIVVAIIGILAAIAIPAYqdYVARARVS---EALALASPLKTA 53
ComGC COG4537
Competence protein ComGC [Mobilome: prophages, transposons];
1-27 5.77e-03

Competence protein ComGC [Mobilome: prophages, transposons];


Pssm-ID: 443603 [Multi-domain]  Cd Length: 108  Bit Score: 34.52  E-value: 5.77e-03
                         10        20
                 ....*....|....*....|....*..
gi 818816153   1 MRNKPALTLIELVLVVTIVSILATAGV 27
Cdd:COG4537    8 LKKEKGFTLIEMLIVLLIISILLLIAV 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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