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Conserved domains on  [gi|818815919|gb|KKU54981|]
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Competence protein [Candidatus Amesbacteria bacterium GW2011_GWA2_47_11]

Protein Classification

ComEA family DNA-binding protein( domain architecture ID 1904092)

ComEA family DNA-binding protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ComEA COG1555
DNA uptake protein ComE or related DNA-binding protein [Replication, recombination and repair]; ...
 158-214 5.50e-15

DNA uptake protein ComE or related DNA-binding protein [Replication, recombination and repair];


:

Pssm-ID: 441164 [Multi-domain]  Cd Length: 72  Bit Score: 67.20  E-value: 5.50e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 818815919 158 KIDINSASQTQLEELPGVGPVTAGKIIAGR----PYMRIEELIEKKIVNQRVWEQIQDKIS 214
Cdd:COG1555   12 KVDINTATAEELQTLPGIGPKLAQRIVEYRekngPFKSVEDLLEVKGIGPKTLEKLKPYLT 72
SLBB pfam10531
SLBB domain;
63-122 5.14e-08

SLBB domain;


:

Pssm-ID: 463136 [Multi-domain]  Cd Length: 56  Bit Score: 48.05  E-value: 5.14e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 818815919   63 VVDVAGAVSSPGVYRLGSGARVEEAIASAGGVTAEADeewmgRNINLS-VKLVDGMKIYIP 122
Cdd:pfam10531   1 VVTVTGEVKRPGNYEVPIGTTLSDLIELAGGFTDDAD-----LDINLRrLKRPGGPMMGIA 56
 
Name Accession Description Interval E-value
ComEA COG1555
DNA uptake protein ComE or related DNA-binding protein [Replication, recombination and repair]; ...
 158-214 5.50e-15

DNA uptake protein ComE or related DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 441164 [Multi-domain]  Cd Length: 72  Bit Score: 67.20  E-value: 5.50e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 818815919 158 KIDINSASQTQLEELPGVGPVTAGKIIAGR----PYMRIEELIEKKIVNQRVWEQIQDKIS 214
Cdd:COG1555   12 KVDINTATAEELQTLPGIGPKLAQRIVEYRekngPFKSVEDLLEVKGIGPKTLEKLKPYLT 72
HHH_3 pfam12836
Helix-hairpin-helix motif; The HhH domain is a short DNA-binding domain.
 156-213 1.75e-10

Helix-hairpin-helix motif; The HhH domain is a short DNA-binding domain.


Pssm-ID: 463723 [Multi-domain]  Cd Length: 62  Bit Score: 54.80  E-value: 1.75e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 818815919  156 QVKIDINSASQTQLEELPGVGPVTAGKIIAGR----PYMRIEELIEKKIVNQRVWEQIQDKI 213
Cdd:pfam12836   1 AVGVDINTASAELLSRVPGLGPKLAKNIVEYReengPFRSREDLLKVKGLGPKTFEQLAGFL 62
SLBB pfam10531
SLBB domain;
63-122 5.14e-08

SLBB domain;


Pssm-ID: 463136 [Multi-domain]  Cd Length: 56  Bit Score: 48.05  E-value: 5.14e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 818815919   63 VVDVAGAVSSPGVYRLGSGARVEEAIASAGGVTAEADeewmgRNINLS-VKLVDGMKIYIP 122
Cdd:pfam10531   1 VVTVTGEVKRPGNYEVPIGTTLSDLIELAGGFTDDAD-----LDINLRrLKRPGGPMMGIA 56
Wza COG1596
Periplasmic protein Wza involved in polysaccharide export, contains SLBB domain of the ...
 64-109 6.45e-07

Periplasmic protein Wza involved in polysaccharide export, contains SLBB domain of the beta-grasp fold [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441204 [Multi-domain]  Cd Length: 182  Bit Score: 47.97  E-value: 6.45e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 818815919  64 VDVAGAVSSPGVYRLGSGARVEEAIASAGGVTAEADEewmgRNINL 109
Cdd:COG1596   97 VYVLGEVNRPGRYPLSSGLTLLDAIALAGGLTERADL----RNVQL 138
psbU PRK02515
photosystem II complex extrinsic protein PsbU;
139-197 2.11e-03

photosystem II complex extrinsic protein PsbU;


Pssm-ID: 235048 [Multi-domain]  Cd Length: 132  Bit Score: 36.96  E-value: 2.11e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 818815919 139 QNSNQTPEEKTQNN-----GALQVKIDINSASQTQLEELPGVGPVTAGKIIAGRPYMRIEELIE 197
Cdd:PRK02515  28 QAAELPLLAVPQNVadaklGEFGEKIDLNNSSVRAFRQFPGMYPTLAGKIVKNAPYDSVEDVLN 91
 
Name Accession Description Interval E-value
ComEA COG1555
DNA uptake protein ComE or related DNA-binding protein [Replication, recombination and repair]; ...
 158-214 5.50e-15

DNA uptake protein ComE or related DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 441164 [Multi-domain]  Cd Length: 72  Bit Score: 67.20  E-value: 5.50e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 818815919 158 KIDINSASQTQLEELPGVGPVTAGKIIAGR----PYMRIEELIEKKIVNQRVWEQIQDKIS 214
Cdd:COG1555   12 KVDINTATAEELQTLPGIGPKLAQRIVEYRekngPFKSVEDLLEVKGIGPKTLEKLKPYLT 72
HHH_3 pfam12836
Helix-hairpin-helix motif; The HhH domain is a short DNA-binding domain.
 156-213 1.75e-10

Helix-hairpin-helix motif; The HhH domain is a short DNA-binding domain.


Pssm-ID: 463723 [Multi-domain]  Cd Length: 62  Bit Score: 54.80  E-value: 1.75e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 818815919  156 QVKIDINSASQTQLEELPGVGPVTAGKIIAGR----PYMRIEELIEKKIVNQRVWEQIQDKI 213
Cdd:pfam12836   1 AVGVDINTASAELLSRVPGLGPKLAKNIVEYReengPFRSREDLLKVKGLGPKTFEQLAGFL 62
SLBB pfam10531
SLBB domain;
63-122 5.14e-08

SLBB domain;


Pssm-ID: 463136 [Multi-domain]  Cd Length: 56  Bit Score: 48.05  E-value: 5.14e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 818815919   63 VVDVAGAVSSPGVYRLGSGARVEEAIASAGGVTAEADeewmgRNINLS-VKLVDGMKIYIP 122
Cdd:pfam10531   1 VVTVTGEVKRPGNYEVPIGTTLSDLIELAGGFTDDAD-----LDINLRrLKRPGGPMMGIA 56
Wza COG1596
Periplasmic protein Wza involved in polysaccharide export, contains SLBB domain of the ...
 64-109 6.45e-07

Periplasmic protein Wza involved in polysaccharide export, contains SLBB domain of the beta-grasp fold [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441204 [Multi-domain]  Cd Length: 182  Bit Score: 47.97  E-value: 6.45e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 818815919  64 VDVAGAVSSPGVYRLGSGARVEEAIASAGGVTAEADEewmgRNINL 109
Cdd:COG1596   97 VYVLGEVNRPGRYPLSSGLTLLDAIALAGGLTERADL----RNVQL 138
PsbU pfam06514
Photosystem II 12 kDa extrinsic protein (PsbU); This family consists of several photosystem II ...
 150-197 2.50e-04

Photosystem II 12 kDa extrinsic protein (PsbU); This family consists of several photosystem II 12 kDa extrinsic protein (PsbU) proteins from cyanobacteria and algae. PsbU is an extrinsic protein of the photosystem II complex of cyanobacteria and red algae. PsbU is known to stabilize the oxygen-evolving machinery of the photosystem II complex against heat-induced inactivation. This family appears to be related to the Helix-hairpin-helix domain.


Pssm-ID: 428984  Cd Length: 93  Bit Score: 38.96  E-value: 2.50e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 818815919  150 QNNGALQVKIDINSASQTQLEELPGVGPVTAGKIIAGRPYMRIEELIE 197
Cdd:pfam06514   6 KLGTEFGEKIDLNNSNVRAFRQYPGMYPTLAGKIVKNAPYDSVEDVLN 53
psbU PRK02515
photosystem II complex extrinsic protein PsbU;
139-197 2.11e-03

photosystem II complex extrinsic protein PsbU;


Pssm-ID: 235048 [Multi-domain]  Cd Length: 132  Bit Score: 36.96  E-value: 2.11e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 818815919 139 QNSNQTPEEKTQNN-----GALQVKIDINSASQTQLEELPGVGPVTAGKIIAGRPYMRIEELIE 197
Cdd:PRK02515  28 QAAELPLLAVPQNVadaklGEFGEKIDLNNSSVRAFRQFPGMYPTLAGKIVKNAPYDSVEDVLN 91
HHH pfam00633
Helix-hairpin-helix motif; The helix-hairpin-helix DNA-binding motif is found to be duplicated ...
 160-185 2.29e-03

Helix-hairpin-helix motif; The helix-hairpin-helix DNA-binding motif is found to be duplicated in the central domain of RuvA. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain.


Pssm-ID: 425789 [Multi-domain]  Cd Length: 30  Bit Score: 34.31  E-value: 2.29e-03
                          10        20
                  ....*....|....*....|....*.
gi 818815919  160 DINSASQTQLEELPGVGPVTAGKIIA 185
Cdd:pfam00633   4 GLIPASVEELLALPGVGPKTAEAILS 29
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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