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Conserved domains on  [gi|818644801|gb|KKS91675|]
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MAG: hypothetical protein UV65_C0001G0030 [Parcubacteria group bacterium GW2011_GWF2_43_11]

Protein Classification

SHOCT domain-containing protein( domain architecture ID 10790219)

SHOCT (short C-terminal) domain-containing protein

PubMed:  23451277

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TM0315 COG3462
Uncharacterized protein, contains short C-terminal (SHOCT) domain [Function unknown];
134-199 1.85e-24

Uncharacterized protein, contains short C-terminal (SHOCT) domain [Function unknown];


:

Pssm-ID: 442685  Cd Length: 80  Bit Score: 91.51  E-value: 1.85e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818644801 134 WGWFGwIFMILFWVLIIVGVIALI-KWLIGQN---IEGGGKEKSALSILKERYAKGEINKEEFEERKKDL 199
Cdd:COG3462    9 WGMGG-FLMLLFWLLLIVLIVYLLvRLLRGRGggpSDGGSEEDSALEILKERYARGEIDEEEYERRKKDL 77
 
Name Accession Description Interval E-value
TM0315 COG3462
Uncharacterized protein, contains short C-terminal (SHOCT) domain [Function unknown];
134-199 1.85e-24

Uncharacterized protein, contains short C-terminal (SHOCT) domain [Function unknown];


Pssm-ID: 442685  Cd Length: 80  Bit Score: 91.51  E-value: 1.85e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818644801 134 WGWFGwIFMILFWVLIIVGVIALI-KWLIGQN---IEGGGKEKSALSILKERYAKGEINKEEFEERKKDL 199
Cdd:COG3462    9 WGMGG-FLMLLFWLLLIVLIVYLLvRLLRGRGggpSDGGSEEDSALEILKERYARGEIDEEEYERRKKDL 77
SHOCT pfam09851
Short C-terminal domain;
173-199 6.98e-09

Short C-terminal domain;


Pssm-ID: 430878  Cd Length: 28  Bit Score: 49.52  E-value: 6.98e-09
                          10        20
                  ....*....|....*....|....*..
gi 818644801  173 SALSILKERYAKGEINKEEFEERKKDL 199
Cdd:pfam09851   1 DALEKLKELYARGEITEEEFERKKAKL 27
 
Name Accession Description Interval E-value
TM0315 COG3462
Uncharacterized protein, contains short C-terminal (SHOCT) domain [Function unknown];
134-199 1.85e-24

Uncharacterized protein, contains short C-terminal (SHOCT) domain [Function unknown];


Pssm-ID: 442685  Cd Length: 80  Bit Score: 91.51  E-value: 1.85e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818644801 134 WGWFGwIFMILFWVLIIVGVIALI-KWLIGQN---IEGGGKEKSALSILKERYAKGEINKEEFEERKKDL 199
Cdd:COG3462    9 WGMGG-FLMLLFWLLLIVLIVYLLvRLLRGRGggpSDGGSEEDSALEILKERYARGEIDEEEYERRKKDL 77
SHOCT pfam09851
Short C-terminal domain;
173-199 6.98e-09

Short C-terminal domain;


Pssm-ID: 430878  Cd Length: 28  Bit Score: 49.52  E-value: 6.98e-09
                          10        20
                  ....*....|....*....|....*..
gi 818644801  173 SALSILKERYAKGEINKEEFEERKKDL 199
Cdd:pfam09851   1 DALEKLKELYARGEITEEEFERKKAKL 27
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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