|
Name |
Accession |
Description |
Interval |
E-value |
| dnaX_nterm |
TIGR02397 |
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ ... |
5-340 |
7.33e-150 |
|
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274111 [Multi-domain] Cd Length: 355 Bit Score: 425.83 E-value: 7.33e-150
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 5 VLYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCSN------------------ 66
Cdd:TIGR02397 3 VLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNgpdgepcnecesckeins 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 67 ---LDLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVPA 143
Cdd:TIGR02397 83 gssLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 144 TIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENMITKEDIEELLGAI 223
Cdd:TIGR02397 163 TILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGKITYEDVNELLGLV 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 224 DFEKVRVLSDHLQDSNAKGAIDYIGKLIEAGVDLEVFAKAFINHLRKIMLIKVDSSLVDLMSQEltvdQVEIVKKQAESF 303
Cdd:TIGR02397 243 DDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKTPSNLLAVLES----EQEFLKELALKL 318
|
330 340 350
....*....|....*....|....*....|....*..
gi 818621560 304 SLNNVAQAIKIFTNARNDIKRSPIPSLPIELAVVEII 340
Cdd:TIGR02397 319 SLEFLLRLLDILLEALKDLRFSNDPRIWLEMTLLRLL 355
|
|
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
1-340 |
7.92e-142 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 412.73 E-value: 7.92e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 1 MGNLVLYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGC---------------- 64
Cdd:PRK05563 1 MMYQALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNClnppdgepcneceick 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 65 -----SNLDLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAH 139
Cdd:PRK05563 81 aitngSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 140 KVPATIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENMITKEDIEEL 219
Cdd:PRK05563 161 KIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKVTYEDALEV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 220 LGAIDFEKVRVLSDHLQDSNAKGAIDYIGKLIEAGVDLEVFAKAFINHLRKIMLIKVDSSLVDLmsqELTVDQVEIVKKQ 299
Cdd:PRK05563 241 TGSVSQEALDDLVDAIVEGDVAKALKILEELLDEGKDPNRFIEDLIYYLRDLLLVKTSPELEIL---DESTENDELFKEL 317
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 818621560 300 AESFSLNNVAQAIKIFTNARNDIKRSPIPSLPIELAVVEII 340
Cdd:PRK05563 318 SEKLDIERLYRMIDILNDAQQQIKWTNQPRIYLEVALVKLC 358
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
12-340 |
1.06e-135 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 389.17 E-value: 1.06e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 12 PQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCSN---------------------LDLL 70
Cdd:COG2812 6 PQTFDDVVGQEHVVRTLKNALASGRLAHAYLFTGPRGVGKTTLARILAKALNCENgptgepcgecescraiaagshPDVI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 71 EIDA-ASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVPATIVSRV 149
Cdd:COG2812 86 EIDAeASNIGVDDIRELIEKVSYAPVEGRYKVYIIDEAHMLTTEAFNALLKTLEEPPPHVVFILATTEPQKLLPTILSRC 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 150 QQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQlriwnenmitkediEELLGAIDF-EKV 228
Cdd:COG2812 166 QRFDFRRLPPEEIAEHLAKIAEREGIEIEPEALALIARAADGSMRDALSLLDQ--------------AIAFGLLDRrELL 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 229 RVLSDHLQDSNAKGAIDYIGKLIEAGVDLEVFAKAFINHLRKIMLIKVDSSLVDLMSQeltvDQVEIVKKQAESFSLNNV 308
Cdd:COG2812 232 LDLLEALLAGDVAALLALAEELAKRGRDLKRFLDDLLSLLRDLLLLKLGPDAELLVNE----DERERLQELARRLSPERL 307
|
330 340 350
....*....|....*....|....*....|..
gi 818621560 309 AQAIKIFTNARNDIKRSPIPSLPIELAVVEII 340
Cdd:COG2812 308 LRAIQILLEARRELERNVNPRLALEMLLLRLA 339
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
1-338 |
1.18e-120 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 359.89 E-value: 1.18e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 1 MGNLVLYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCSN-------------- 66
Cdd:PRK14950 1 MTVQVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTndpkgrpcgtcemc 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 67 --------LDLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEA 138
Cdd:PRK14950 81 raiaegsaVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 139 HKVPATIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENMITKEDIEE 218
Cdd:PRK14950 161 HKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLSQVQS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 219 LLGAIDFEKVRVLSDHLQDSNAKGAIDYIGKLIEAGVDLEVFAKAFINHLRKIMLIKV--DSSLVDlmsqeLTVDQVEIV 296
Cdd:PRK14950 241 LLGISGDEEVKALAEALLAKDLKAALRTLNAVAADGADLRQFTRDLVEYLRQVMLLNSgaDRSLLD-----LTADEKAAL 315
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 818621560 297 KKQAESFSLNNVAQAIKIFTNARNDIKRSPIPSLPIELAVVE 338
Cdd:PRK14950 316 QKVSQIANLEALTKWVKAFSQLDFQLRTTSYGQLPLELAVIE 357
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
1-338 |
3.22e-117 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 350.58 E-value: 3.22e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 1 MGNLVLYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGC---------------- 64
Cdd:PRK14965 1 MSYLVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCeqgltaepcnvcppcv 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 65 -----SNLDLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAH 139
Cdd:PRK14965 81 eitegRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 140 KVPATIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENMITKEDIEEL 219
Cdd:PRK14965 161 KVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVAEL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 220 LGAIDfekVRVLSDHLQ---DSNAKGAIDYIGKLIEAGVDLEVFAKAFINHLRKIMLIKVDSSLVDLMsqELTVDQVEIV 296
Cdd:PRK14965 241 LGVVD---RRLLLDISAavfGRDTRALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLRAVGEPGDLL--DLSEAELAEL 315
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 818621560 297 KKQAESFSLNNVAQAIKIFTNARNDIKRSPIPSLPIELAVVE 338
Cdd:PRK14965 316 RAQAAAADAADLQRHLTLLLRAEGEMAHASFPRLVLEMALLK 357
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
8-337 |
5.47e-110 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 329.09 E-value: 5.47e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 8 RKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCSNL-------------------- 67
Cdd:PRK14953 8 RKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPqegepcgkcencveidkgsf 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 68 -DLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVPATIV 146
Cdd:PRK14953 88 pDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTIL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 147 SRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENMITKEDIEELLGAIDFE 226
Cdd:PRK14953 168 SRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVVEEFLGIVSQE 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 227 KVRVLSDHLQDSNAKGAIDYIGKLIEAGVDLEVFAKAFINHLRKIMLIKVdsslvdlMSQELTVDQVEIVKKQAEsFSLN 306
Cdd:PRK14953 248 SVRKFLNLLLESDVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNILLNKS-------LKNPEEVFQVEDFYRKLE-KPLE 319
|
330 340 350
....*....|....*....|....*....|.
gi 818621560 307 NVAQAIKIFTNARNDiKRSPIPSLPIELAVV 337
Cdd:PRK14953 320 ALLYLEDVINKAFSE-ARTRDPLRAYELAIL 349
|
|
| PRK07133 |
PRK07133 |
DNA polymerase III subunits gamma and tau; Validated |
1-343 |
1.44e-103 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235943 [Multi-domain] Cd Length: 725 Bit Score: 319.84 E-value: 1.44e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 1 MGNLVLYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCS--------------- 65
Cdd:PRK07133 3 MKYKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCShktdllepcqecien 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 66 ---NLDLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVP 142
Cdd:PRK07133 83 vnnSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 143 ATIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENMITKEDIEELLGA 222
Cdd:PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVEELFGL 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 223 IDFEKVRVLSDHLQDSNAKGAIDYIGKLIEAGVDLEVFAKAFINHLRKIMLIKV--DSSLVDLMSQElTVDQVEIVKKQA 300
Cdd:PRK07133 243 VSNENLINLLNLLYSKDIKEVLNILNQIKEQGIDPELLLISLINLVKEFIIFNKtkDNSLLEYYSEE-DLEKLKIDDDFA 321
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 818621560 301 ESFslnnvaqaIKIFTNARNDIKRSPIPSLPIELAVVEIINNK 343
Cdd:PRK07133 322 YKF--------IEILFDLLKDLKISDNPNDTLEILIIKLLALS 356
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
5-278 |
8.30e-95 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 289.74 E-value: 8.30e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 5 VLYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCSN------------------ 66
Cdd:PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENrkgvepcnecracrside 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 67 ---LDLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVPA 143
Cdd:PRK14962 83 gtfMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPP 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 144 TIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENMITKEDIEELLGAI 223
Cdd:PRK14962 163 TIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALGLI 242
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 818621560 224 DFEKVRVLSDHLQDSNAKGAIDYIGKLIEAGVDLEVfakaFINHLRKIMLIKVDS 278
Cdd:PRK14962 243 PIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEV----LIQQAIEDLVEDLER 293
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
1-312 |
2.74e-94 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 293.00 E-value: 2.74e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 1 MGNLVLYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGC---------------- 64
Cdd:PRK14954 1 MSYQVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCqrmiddpvylqevtep 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 65 -------------SNLDLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIF 131
Cdd:PRK14954 81 cgecescrdfdagTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 132 ILATTEAHKVPATIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWN---- 207
Cdd:PRK14954 161 IFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSvgse 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 208 -ENMITKEDIEELLGAIDFEKVRVLSDHLQDSNAKGAIDYIGKLIEAGVDLEVFAKAFINHLRKIMLIkvdsslVDLMSQ 286
Cdd:PRK14954 241 aEKVIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVIDNGYDEQDFLEKLIEHFRNFLVL------YNLRST 314
|
330 340
....*....|....*....|....*.
gi 818621560 287 ELtVDQVEIVKKQAESFSLNNVAQAI 312
Cdd:PRK14954 315 RL-IERPESVKERYQQSAGGLTPAAV 339
|
|
| PRK06305 |
PRK06305 |
DNA polymerase III subunits gamma and tau; Validated |
5-280 |
2.95e-94 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180523 [Multi-domain] Cd Length: 451 Bit Score: 287.82 E-value: 2.95e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 5 VLYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGC-------------------- 64
Cdd:PRK06305 6 VSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCqnptedqepcnqcasckeis 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 65 --SNLDLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVP 142
Cdd:PRK06305 86 sgTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIP 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 143 ATIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENMITKEDIEELLGA 222
Cdd:PRK06305 166 GTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDSVAKALGL 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 818621560 223 IDFEKVRVLSDHLQDSNAKGAIDYIGKLIEAGVDLEVFAKAFINHLRKIMLIKVDSSL 280
Cdd:PRK06305 246 LSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLKQYNKQL 303
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
1-326 |
1.73e-93 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 288.18 E-value: 1.73e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 1 MGNLVLYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCSN-------------- 66
Cdd:PRK14969 1 MSYQVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETgvtatpcgvcsacl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 67 -------LDLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAH 139
Cdd:PRK14969 81 eidsgrfVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 140 KVPATIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENMITKEDIEEL 219
Cdd:PRK14969 161 KIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVNESEVRAM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 220 LGAIDFEKVRVLSDHL--QDSNAkgaidyigkLIEAGVDLEVFAKAFinhlrkimlikvDSSLVDLMS--QELTVDQV-- 293
Cdd:PRK14969 241 LGAIDQDYLFALLEALlaQDGAA---------LLAIADAMEERSLSF------------DAALQDLAAllHRLAIAQTvp 299
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 818621560 294 -EIVKKQAESFSLNNVAQAI---------KIFTNARNDIKRSP 326
Cdd:PRK14969 300 dSIADDLPERDRLLDLAKRLspediqlyyQIALHGRRDLGLAP 342
|
|
| PRK14955 |
PRK14955 |
DNA polymerase III subunits gamma and tau; Provisional |
1-340 |
3.60e-93 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184919 [Multi-domain] Cd Length: 397 Bit Score: 283.32 E-value: 3.60e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 1 MGNLVLYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCS--------------- 65
Cdd:PRK14955 1 MSYQVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQrmiddadylqevtep 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 66 --------------NLDLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIF 131
Cdd:PRK14955 81 cgecescrdfdagtSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 132 ILATTEAHKVPATIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWN---- 207
Cdd:PRK14955 161 IFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFSvese 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 208 -ENMITKEDIEELLGAIDFEKVRVLSDHLQDSNAKGAIDYIGKLIEAGVDLEVFAKAFINHLRKIMLIKvdsslvDLMSQ 286
Cdd:PRK14955 241 gEGSIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLVVH------NLRST 314
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 818621560 287 ELtVDQVEIVKKQ----AESFSLNNVAQAIKIFTNARNDIKRSPIPSLPIELAVVEII 340
Cdd:PRK14955 315 RL-VERPDAVRERyerdAAKFSPEVIMQMTDLLLQTQKELKFQFEYQFRFELALLKLI 371
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
6-254 |
1.17e-91 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 286.09 E-value: 1.17e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 6 LYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCSN------------------- 66
Cdd:PRK14948 6 LHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNsdkptpepcgkcelcraia 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 67 ----LDLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVP 142
Cdd:PRK14948 86 agnaLDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 143 ATIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWnENMITKEDIEELLGA 222
Cdd:PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLL-PGPITPEAVWDLLGA 244
|
250 260 270
....*....|....*....|....*....|..
gi 818621560 223 IDFEKVRVLSDHLQDSNAKGAIDYIGKLIEAG 254
Cdd:PRK14948 245 VPEQDLLNLLKALASNDPESLLDSCRQLLDRG 276
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
6-254 |
1.45e-90 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 279.80 E-value: 1.45e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 6 LYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGC--------------------S 65
Cdd:PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCsgedpkpcgecesclavrrgA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 66 NLDLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVPATI 145
Cdd:PRK14963 84 HPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTI 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 146 VSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLrIWNENMITKEDIEELLGAIDF 225
Cdd:PRK14963 164 LSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERL-LALGTPVTRKQVEEALGLPPQ 242
|
250 260
....*....|....*....|....*....
gi 818621560 226 EKVRVLSDHLQDSNAKGAIDYIGKLIEAG 254
Cdd:PRK14963 243 ERLRGIAAALAQGDAAEALSGAAQLYRDG 271
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
1-256 |
2.31e-89 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 280.60 E-value: 2.31e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 1 MGNLVLYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSV----G--------CSN-- 66
Cdd:PRK07994 1 MSYQVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLncetGitatpcgeCDNcr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 67 -------LDLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAH 139
Cdd:PRK07994 81 eieqgrfVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 140 KVPATIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENMITKEDIEEL 219
Cdd:PRK07994 161 KLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQVTTDDVSAM 240
|
250 260 270
....*....|....*....|....*....|....*..
gi 818621560 220 LGAIDFEKVRVLSDHLQDSNAKGAIDYIGKLIEAGVD 256
Cdd:PRK07994 241 LGTLDDDQALSLLEALVEGDGERVMALINQLAERGPD 277
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
1-341 |
6.18e-88 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 276.27 E-value: 6.18e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 1 MGN-LVLYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCSNL------------ 67
Cdd:PRK14971 1 MENyIVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLtadgeacneces 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 68 ----------DLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTE 137
Cdd:PRK14971 81 cvafneqrsyNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 138 AHKVPATIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENMITKEDIE 217
Cdd:PRK14971 161 KHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKSVI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 218 ELLGAIDFEKVRVLSDHLQDSNAKGAIDYIGKLIEAGVDLEVFAKAFINHLRKIMLIKvDSSLVDLMSQELTVDQ--VEI 295
Cdd:PRK14971 241 ENLNILDYDYYFRLTDALLAGKVSDSLLLFDEILNKGFDGSHFITGLASHFRDLLVCK-DAATLQLLEVGESIRQryLEQ 319
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 818621560 296 VKKQAESFSLnnvaQAIKI-------FTNARNdiKRspipsLPIELAVVEIIN 341
Cdd:PRK14971 320 AQKCPMSFLY----RALKLcnqcdlnYRASKN--KR-----LLVELTLIQLAQ 361
|
|
| PRK09111 |
PRK09111 |
DNA polymerase III subunits gamma and tau; Validated |
5-259 |
3.64e-87 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236382 [Multi-domain] Cd Length: 598 Bit Score: 273.70 E-value: 3.64e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 5 VLYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCS------------------- 65
Cdd:PRK09111 13 VLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEgpdgdggptidlcgvgehc 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 66 -------NLDLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEA 138
Cdd:PRK09111 93 qaimegrHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEI 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 139 HKVPATIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENMITKEDIEE 218
Cdd:PRK09111 173 RKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHGAGEVTAEAVRD 252
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 818621560 219 LLGAIDFEKVRVLSDHLQDSNAKGAIDYIGKLIEAGVDLEV 259
Cdd:PRK09111 253 MLGLADRARVIDLFEALMRGDVAAALAEFRAQYDAGADPVV 293
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
1-326 |
9.55e-87 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 275.43 E-value: 9.55e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 1 MGNLVLYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCSN-------------- 66
Cdd:PRK08691 1 MAYQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENaqhgepcgvcqsct 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 67 -------LDLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAH 139
Cdd:PRK08691 81 qidagryVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 140 KVPATIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENMITKEDIEEL 219
Cdd:PRK08691 161 KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 220 LGAIDFEKVRVLSDHLQDSNAKGAIDYIGKLIEAGVdlevfakAFINHLRKIMLIKVDSSLVDLMSQELTVDQVE--IVK 297
Cdd:PRK08691 241 IGAVDKQYLYELLTGIINQDGAALLAKAQEMAACAV-------GFDNALGELAILLQQLALIQAVPSALAHDDPDsdILH 313
|
330 340
....*....|....*....|....*....
gi 818621560 298 KQAESFSLNNVAQAIKIFTNARNDIKRSP 326
Cdd:PRK08691 314 RLAQTISGEQIQLYYQIAVHGKRDLSLAP 342
|
|
| PRK06647 |
PRK06647 |
DNA polymerase III subunits gamma and tau; Validated |
9-339 |
1.62e-86 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235845 [Multi-domain] Cd Length: 563 Bit Score: 271.26 E-value: 1.62e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 9 KYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGC---------------------SNL 67
Cdd:PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCvngptpmpcgecsscksidndNSL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 68 DLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVPATIVS 147
Cdd:PRK06647 89 DVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKS 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 148 RVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENMITKEDIEELLGAIDFEK 227
Cdd:PRK06647 169 RCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQIRSKMGLTGDEF 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 228 VRVLSDHLQDSNAKGAIDYIGKLIEAGVDLEVFAKAFINHLRKIMLIKVDSSLVDLMSQELtvdqvEIVKKQAESFSLNN 307
Cdd:PRK06647 249 LEKLASSILNEDAKELLCVLDSVFLSGVSVEQFLLDCIEFFRELLFLKHGIKNEAFIGIKA-----ERLPEKLREFDLSQ 323
|
330 340 350
....*....|....*....|....*....|..
gi 818621560 308 VAQAIKIFTNARNDIKRSPIPSLPIELAVVEI 339
Cdd:PRK06647 324 IERAISVLLETYRDLQFSVNPRYELEINFSKI 355
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1-244 |
1.65e-86 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 274.83 E-value: 1.65e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 1 MGNLVLYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCSN-------------- 66
Cdd:PRK12323 1 MSYQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGadgeggitaqpcgq 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 67 ------------LDLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILA 134
Cdd:PRK12323 81 cracteidagrfVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 135 TTEAHKVPATIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENMITKE 214
Cdd:PRK12323 161 TTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNVSEE 240
|
250 260 270
....*....|....*....|....*....|.
gi 818621560 215 DIEELLGAIDFEK-VRVLsDHLQDSNAKGAI 244
Cdd:PRK12323 241 AVRGMLGAIDQSYlVRLL-DALAAEDGAALL 270
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
5-282 |
1.28e-84 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 264.12 E-value: 1.28e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 5 VLYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCSN------------------ 66
Cdd:PRK14956 7 VLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENpignepcnectscleitk 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 67 ---LDLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVPA 143
Cdd:PRK14956 87 gisSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPE 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 144 TIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENMITKEDIEELLGAI 223
Cdd:PRK14956 167 TILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGYH 246
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 224 DFEKVRVLSDHLQD-SNAKGAIDYIGKLIEAGVDLEVFAKAFINHLRKIMLIKvdSSLVD 282
Cdd:PRK14956 247 GIEFLTSFIKSLIDpDNHSKSLEILESLYQEGQDIYKFLWDSIEFTHTLNLIR--DSLAD 304
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
1-339 |
4.88e-84 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 258.65 E-value: 4.88e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 1 MGNLVLY-RKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCSNLD---------LL 70
Cdd:PRK14970 1 MENFVVSaRKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDdpnedfsfnIF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 71 EIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVPATIVSRVQ 150
Cdd:PRK14970 81 ELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 151 QFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENMITKEDIEELLGAIDFEKVRV 230
Cdd:PRK14970 161 IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYIN 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 231 LSDHLQDSNAKGAIDYIGKLIEAGVDLEVFAKAFINHLRKIMLIKVDSSLVDLMSQELTVDQVEIvkkQAESFSLNNVAQ 310
Cdd:PRK14970 241 VTDLILENKIPELLLAFNEILRKGFDGHHFIAGLASHFRDLMVSKTPATIALLEVGEQAKKRYEV---QSQKVSQSFLLS 317
|
330 340
....*....|....*....|....*....
gi 818621560 311 AIKIFTNARNDIKRSPIPSLPIELAVVEI 339
Cdd:PRK14970 318 GIDIANDCDLKYKLSKNQRLLVELALMQL 346
|
|
| PRK05896 |
PRK05896 |
DNA polymerase III subunits gamma and tau; Validated |
1-343 |
7.91e-84 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235638 [Multi-domain] Cd Length: 605 Bit Score: 265.17 E-value: 7.91e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 1 MGNLVLYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCSNL------------- 67
Cdd:PRK05896 1 MSEITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPkdgdccnscsvce 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 68 --------DLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAH 139
Cdd:PRK05896 81 sintnqsvDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 140 KVPATIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENMITKEDIEEL 219
Cdd:PRK05896 161 KIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDINKT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 220 LGAIDFEKVRVLSDHLQDSNAKGAIDYIGKLIEAGVDLEVFAKAFINHLRKIML---IKVDSSLVDLMSQELTVDQVEIV 296
Cdd:PRK05896 241 FGLVDNNKKINLIELIQKNDIEELRNLINELESKGINFEAFCRDLINLLIDLLVyqkTKNINLLKKLSKEQLKTLNLEKQ 320
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 818621560 297 KKQAESFSLNNVAQAikiFTNARNDIKRSPIPSLPIELAVVEIINNK 343
Cdd:PRK05896 321 KLLSIEFNTNFLLNN---FVSLINRLKASVNQVFEFEIYLYKIINAN 364
|
|
| PRK08451 |
PRK08451 |
DNA polymerase III subunits gamma and tau; Validated |
5-240 |
1.14e-83 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236267 [Multi-domain] Cd Length: 535 Bit Score: 263.05 E-value: 1.14e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 5 VLYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGC-------------------- 64
Cdd:PRK08451 3 ALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCeqgpsstpcdtciqcqsale 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 65 -SNLDLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVPA 143
Cdd:PRK08451 83 nRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 144 TIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENMITKEDIEELLGAI 223
Cdd:PRK08451 163 TILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVADMLGLL 242
|
250
....*....|....*....
gi 818621560 224 DFEKVRVLSDHL--QDSNA 240
Cdd:PRK08451 243 DPSKLEDFFQAIlnQDKEK 261
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
1-245 |
9.41e-83 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 262.73 E-value: 9.41e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 1 MGNLVLYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCSN-------------- 66
Cdd:PRK14951 1 MSYLVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGpdgqggitatpcgv 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 67 ------------LDLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILA 134
Cdd:PRK14951 81 cqacrdidsgrfVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 135 TTEAHKVPATIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENMITKE 214
Cdd:PRK14951 161 TTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGSGQLQEA 240
|
250 260 270
....*....|....*....|....*....|.
gi 818621560 215 DIEELLGAIDFEKVRVLSDHLQDSNAKGAID 245
Cdd:PRK14951 241 AVRQMLGSVDRSHVFRLIDALAQGDGRTVVE 271
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
1-341 |
1.23e-82 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 255.12 E-value: 1.23e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 1 MGNLVLYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCSN-------------- 66
Cdd:PRK14961 1 MNYQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNgitsnpcrkciick 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 67 -------LDLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAH 139
Cdd:PRK14961 81 eiekglcLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 140 KVPATIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENMITKEDIEEL 219
Cdd:PRK14961 161 KIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNVTDM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 220 LGAIDFEKVRVLSDHLQDSNAKGAIDYIGKLIEAGVDLEvfaKAFINHLRKIMLIKVDSSLVDLMSQELTVDQVEIVKKQ 299
Cdd:PRK14961 241 LGLLNEKQSFLLTDALLKKDSKKTMLLLNKISSIGIEWE---NILIEMLRFLHHISMSQSFPKIWNTIFIKNYKNQIQKI 317
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 818621560 300 AESFSLNNVAQAIKIFTNARNDIKRSPIPSLPIELAVVEIIN 341
Cdd:PRK14961 318 AQNNKKTNIQLCYQILLNGRKELKFAPDQKIGVEMTLLRAIN 359
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
4-311 |
3.12e-80 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 260.69 E-value: 3.12e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 4 LVLYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGC------------------- 64
Cdd:PRK07764 3 LALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCvegptstpcgecdscvala 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 65 ----SNLDLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHK 140
Cdd:PRK07764 83 pggpGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 141 VPATIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLriwnenM-------ITK 213
Cdd:PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQL------LagagpegVTY 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 214 EDIEELLGAIDF----EKVrvlsDHLQDSNAKGAIDYIGKLIEAGVDLEVFAKAFINHLRKIMLIK-----VDSSLVDlM 284
Cdd:PRK07764 237 ERAVALLGVTDSalidEAV----DALAAGDGAALFGTVDRVIEAGHDPRRFAEDLLERLRDLIVLQavpdaAERGLVD-A 311
|
330 340
....*....|....*....|....*..
gi 818621560 285 SqeltVDQVEIVKKQAESFSLNNVAQA 311
Cdd:PRK07764 312 P----ADQLDRMRAQAQRLGPAELTRA 334
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
1-339 |
2.91e-79 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 253.83 E-value: 2.91e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 1 MGNLVLYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCS--------------- 65
Cdd:PRK14959 1 MSHASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCEtaptgepcntceqcr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 66 ------NLDLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAH 139
Cdd:PRK14959 81 kvtqgmHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 140 KVPATIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENMITKEDIEEL 219
Cdd:PRK14959 161 KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 220 LGAIDFEKVRVLSDHLQDSNAKGAIDYIGKLIEAGVDLEVFAKAFINHLRKIMLIKvDSSLVDLMSQELTVDQVEIVKKQ 299
Cdd:PRK14959 241 LGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLR-QAGEAALASLDLPEDEARQWLGW 319
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 818621560 300 AESFSLNNVAQAIKIFTNARNDIKRSPIPSLPIELAVVEI 339
Cdd:PRK14959 320 AKRFEPAHIHACWQMTLEGQRRVLTSLEPAMALELLLLNL 359
|
|
| PRK14952 |
PRK14952 |
DNA polymerase III subunits gamma/tau; |
6-334 |
3.04e-77 |
|
DNA polymerase III subunits gamma/tau;
Pssm-ID: 237866 [Multi-domain] Cd Length: 584 Bit Score: 247.49 E-value: 3.04e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 6 LYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCS-------------------- 65
Cdd:PRK14952 3 LYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAqgptatpcgvcescvalapn 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 66 ---NLDLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVP 142
Cdd:PRK14952 83 gpgSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 143 ATIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNE-NMITKEDIEELLG 221
Cdd:PRK14952 163 PTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAAdTHVTYQRALGLLG 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 222 AIDFEKVRVLSDHLQDSNAKGAIDYIGKLIEAGVDLEVFAKAFINHLRKIMLIKvdsSLVDLMSQ---ELTVDQVEIVKK 298
Cdd:PRK14952 243 ATDVALIDDAVDALAADDAAALFGAIESVIDAGHDPRRFATDLLERFRDLIVLQ---AVPDAAARgvvDAPEDVLERMRE 319
|
330 340 350
....*....|....*....|....*....|....*.
gi 818621560 299 QAESFSLNNVAQAIKIFTNARNDIKRSPIPSLPIEL 334
Cdd:PRK14952 320 QAARIGLATLTRYAEVVQAGLGEMRGATAPRLLLEV 355
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
5-224 |
3.27e-77 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 250.35 E-value: 3.27e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 5 VLYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCSN------------------ 66
Cdd:PRK14960 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETgvtstpcevcatckavne 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 67 ---LDLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVPA 143
Cdd:PRK14960 84 grfIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPI 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 144 TIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENMITKEDIEELLGAI 223
Cdd:PRK14960 164 TVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLGLI 243
|
.
gi 818621560 224 D 224
Cdd:PRK14960 244 D 244
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
5-239 |
9.89e-76 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 249.00 E-value: 9.89e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 5 VLYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCSN------------------ 66
Cdd:PRK07003 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETgvtsqpcgvcracreide 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 67 ---LDLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVPA 143
Cdd:PRK07003 85 grfVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPV 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 144 TIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENMITKEDIEELLGAI 223
Cdd:PRK07003 165 TVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGAL 244
|
250
....*....|....*.
gi 818621560 224 DFEKVRVLSDHLQDSN 239
Cdd:PRK07003 245 DQTYMVRLLDALAAGD 260
|
|
| PRK06645 |
PRK06645 |
DNA polymerase III subunits gamma and tau; Validated |
8-274 |
1.30e-74 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180643 [Multi-domain] Cd Length: 507 Bit Score: 238.61 E-value: 1.30e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 8 RKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCSNL-------------------- 67
Cdd:PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALitenttiktceqctncisfn 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 68 -----DLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVP 142
Cdd:PRK06645 93 nhnhpDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIP 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 143 ATIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWN---ENMITKEDIEEL 219
Cdd:PRK06645 173 ATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSaksDNIISPQVINQM 252
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 818621560 220 LGAIDFEKVRVLSDHLQDSNAKGAIDYIGKLIEAGVDLEVFAKA---FINHLRKIMLI 274
Cdd:PRK06645 253 LGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFIESvsdFIAYLNKVKML 310
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
3-260 |
1.57e-72 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 232.75 E-value: 1.57e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 3 NLVLyrKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGC------------------ 64
Cdd:PRK14964 2 NLAL--KYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCsngptsdpcgtchncisi 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 65 ---SNLDLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKV 141
Cdd:PRK14964 80 knsNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 142 PATIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENMITKEDIEELLG 221
Cdd:PRK14964 160 PVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRDLLG 239
|
250 260 270
....*....|....*....|....*....|....*....
gi 818621560 222 AIDFEKVRVLSDHLQDSNAKGAIDYIGKLIEAGVDLEVF 260
Cdd:PRK14964 240 CVDKHILEDLVEAILLGDAQSALNVFRELCNTSNPVIIL 278
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
1-340 |
5.72e-70 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 227.66 E-value: 5.72e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 1 MGNLVLYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGC---------------- 64
Cdd:PRK14957 1 MSYQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCktgvtaepcnkcencv 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 65 -----SNLDLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAH 139
Cdd:PRK14957 81 ainnnSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 140 KVPATIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENMITKEDIEEL 219
Cdd:PRK14957 161 KIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQIKQM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 220 LGAIDFEKVRVLSDHLQDSNAKGAIDYIGKLIEAgvdlEVFAKAFINHLRKIMLIKVDSSLVDLMSQELTVDqVEIVKKQ 299
Cdd:PRK14957 241 LGIIDSEEVYSIINAIIDNDPKAILPAIKNLALT----ESSADAVLDRIAEIWFACCIYSFTQSLDAVNDID-VDIINNI 315
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 818621560 300 AESFSLNNVAQAIKIFTNARNDIKRSPIPSLPIELAVVEII 340
Cdd:PRK14957 316 LAKISIEQAHFLYQLTITAKKDIALAPNFETGVTMAILRLI 356
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
5-224 |
3.59e-68 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 230.00 E-value: 3.59e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 5 VLYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCSN------------------ 66
Cdd:PRK14949 5 VLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQgvtatpcgvcsscveiaq 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 67 ---LDLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVPA 143
Cdd:PRK14949 85 grfVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 144 TIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENMITKEDIEELLGAI 223
Cdd:PRK14949 165 TVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQVMLTQVQTMLGSI 244
|
.
gi 818621560 224 D 224
Cdd:PRK14949 245 D 245
|
|
| PRK14958 |
PRK14958 |
DNA polymerase III subunits gamma and tau; Provisional |
1-340 |
4.31e-66 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184922 [Multi-domain] Cd Length: 509 Bit Score: 216.52 E-value: 4.31e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 1 MGNLVLYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCSN-------------- 66
Cdd:PRK14958 1 MAHQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKgvsanpcndcencr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 67 -------LDLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAH 139
Cdd:PRK14958 81 eidegrfPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 140 KVPATIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENMITKEDIEEL 219
Cdd:PRK14958 161 KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 220 LGAIDfekVRVLSDHLQDSNAKGAIDYIG---KLIEAGVDlevfakaFINHLRKIMLIKVDSSLVDLMSQELTVDQVEIV 296
Cdd:PRK14958 241 LGTIE---PLLLFDILEALAAKAGDRLLGcvtRLVEQGVD-------FSNALADLLSLLHQIAIIQTVPEALIENDSEQL 310
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 818621560 297 KKQAESFSLNNVAQAIKIFTNARNDIKRSPIPSLPIELAVVEII 340
Cdd:PRK14958 311 RQLAKLLDREDVQLFYQIGLIGQRDLAYSPTPQTGFEMTLLRML 354
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
21-252 |
8.32e-52 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 173.24 E-value: 8.32e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 21 QEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCSN--------------------LDLLEI---DAASN 77
Cdd:COG0470 1 QEEAWEQLLAAAESGRLPHALLLHGPPGIGKTTLALALARDLLCENpeggkacgqchsrlmaagnhPDLLELnpeEKSDQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 78 RGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVPATIVSRVQQFTFKKL 157
Cdd:COG0470 81 IGIDQIRELGEFLSLTPLEGGRKVVIIDEADAMNEAAANALLKTLEEPPKNTPFILIANDPSRLLPTIRSRCQVIRFRPP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 158 AITDIVKKLQkiveaeKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENMitkEDIEELLGAIDFEKvrvLSDHLQD 237
Cdd:COG0470 161 SEEEALAWLR------EEGVDEDALEAILRLAGGDPRAAINLLQALAGRKELL---EDLAALLSRDRALE---LLDALLK 228
|
250
....*....|....*
gi 818621560 238 SNAKGAIDYIGKLIE 252
Cdd:COG0470 229 AEALELLDWLLKWLL 243
|
|
| DNA_pol3_delta2 |
pfam13177 |
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ... |
20-158 |
3.72e-42 |
|
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.
Pssm-ID: 433013 [Multi-domain] Cd Length: 161 Bit Score: 143.89 E-value: 3.72e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 20 GQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCSNL---------------------DLLEIDAASNR 78
Cdd:pfam13177 1 GQPEAIQLLQNSLENGRLSHAYLFSGPEGVGKLELALAFAKALFCEEPgddlpcgqcrscrriesgnhpDLVIIEPEGQS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 79 -GIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVPATIVSRVQQFTFKKL 157
Cdd:pfam13177 81 iKIDQIRELQKEFSKSPYEGKKKVYIIEDAEKMTASAANSLLKFLEEPPGNTVIILLTENPSRLLPTIRSRCQIIRFKPL 160
|
.
gi 818621560 158 A 158
Cdd:pfam13177 161 S 161
|
|
| holB |
TIGR00678 |
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' ... |
26-196 |
2.72e-41 |
|
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273213 [Multi-domain] Cd Length: 188 Bit Score: 142.77 E-value: 2.72e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 26 RTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCSNL---------------------DLLEIDAASNR-GIDEI 83
Cdd:TIGR00678 2 QQLKRALEKGRLAHAYLFTGPEGVGKELLALALAKALLCEQRgggepcgechscrlieagnhpDLHRLEPEGQSiKVDQV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 84 RQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVPATIVSRVQQFTFKKLAITDIV 163
Cdd:TIGR00678 82 RELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQRLPFPPLSEEALL 161
|
170 180 190
....*....|....*....|....*....|....*
gi 818621560 164 KKLQK--IVEAekikinddALRLVASYADGSYRDA 196
Cdd:TIGR00678 162 QWLIRqgISEE--------AAELLLALAGGSPGRA 188
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
9-258 |
8.59e-39 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 142.15 E-value: 8.59e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 9 KYRPQSWEEIIGQEHIV---RTLTNALKLGRVnHAYLFSGPRGTGKTTIARLLAKSVgcsNLDLLEIDAASNrGIDEIRQ 85
Cdd:PRK13342 5 RMRPKTLDEVVGQEHLLgpgKPLRRMIEAGRL-SSMILWGPPGTGKTTLARIIAGAT---DAPFEALSAVTS-GVKDLRE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 86 LRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEppAHAIFILATTE--AHKVPATIVSRVQQFTFKKLAITDIV 163
Cdd:PRK13342 80 VIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED--GTITLIGATTEnpSFEVNPALLSRAQVFELKPLSEEDIE 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 164 KKLQKIVEAEK---IKINDDALRLVASYADGSYRDAESMLEQLRIWNENmITKEDIEELLGaidfeKVRVLSDHLQD--- 237
Cdd:PRK13342 158 QLLKRALEDKErglVELDDEALDALARLANGDARRALNLLELAALGVDS-ITLELLEEALQ-----KRAARYDKDGDehy 231
|
250 260 270
....*....|....*....|....*....|...
gi 818621560 238 ------------SNAKGAIDYIGKLIEAGVDLE 258
Cdd:PRK13342 232 dlisalhksirgSDPDAALYYLARMLEAGEDPL 264
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
9-282 |
5.43e-33 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 125.10 E-value: 5.43e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 9 KYRPQSWEEIIGQEHIVRTLTNALKLGRVNHaYLFSGPRGTGKTTIARLLAKSVGCSNL--DLLEIDAAS--NRGIDEIR 84
Cdd:PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDSPNLPH-LLVQGPPGSGKTAAVRALARELYGDPWenNFTEFNVADffDQGKKYLV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 85 Q-----------------LRDGIK--------FAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAH 139
Cdd:PRK12402 87 EdprfahflgtdkrirssKIDNFKhvlkeyasYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPS 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 140 KVPATIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLeQLRIWNENMITKEDIEEL 219
Cdd:PRK12402 167 KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTL-QTAALAAGEITMEAAYEA 245
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 818621560 220 LGAIDF-EKVRVLSDHLQDSNAKGAIDYIGKL-IEAGVD--------LEVFAKAFI--NHLRKIMLI-KVDSSLVD 282
Cdd:PRK12402 246 LGDVGTdEVIESLLDAAEAGDFTDARKTLDDLlIDEGLSggevleelLRVARSRYRgdNLARLHRLAaDADARLTD 321
|
|
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
1-229 |
1.34e-32 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 123.44 E-value: 1.34e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 1 MGNLVLYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHaYLFSGPRGTGKTTIARLLAKSVGCSNL--DLLEIDAASNR 78
Cdd:PRK00440 2 MMEEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPH-LLFAGPPGTGKTTAALALARELYGEDWreNFLELNASDER 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 79 GIDEIRqlrDGIK-FAPTA--GK--YKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVPATIVSRVQQFT 153
Cdd:PRK00440 81 GIDVIR---NKIKeFARTApvGGapFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFR 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 818621560 154 FKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENmITKEDIEELLGAIDFEKVR 229
Cdd:PRK00440 158 FSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAATGKE-VTEEAVYKITGTARPEEIR 232
|
|
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
11-257 |
4.86e-30 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 118.62 E-value: 4.86e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 11 RPQSWEEIIGQEHIV---RTLTNALKLGRVnHAYLFSGPRGTGKTTIARLLAKSvgcSNLDLLEIDAASNrGIDEIRQLR 87
Cdd:COG2256 20 RPRTLDEVVGQEHLLgpgKPLRRAIEAGRL-SSMILWGPPGTGKTTLARLIANA---TDAEFVALSAVTS-GVKDIREVI 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 88 DGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEppAHAIFILATTE--AHKVPATIVSRVQQFTFKKLAITDIVKK 165
Cdd:COG2256 95 EEARERRAYGRRTILFVDEIHRFNKAQQDALLPHVED--GTITLIGATTEnpSFEVNSALLSRCRVFVLKPLSEEDLEQL 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 166 LQKIVE-------AEKIKINDDALRLVASYADGSYRDAESMLEQL----RIWNENMITKEDIEELLG--AIDFEK----- 227
Cdd:COG2256 173 LERALAdderglgGYKLELDDEALEALARLADGDARRALNALELAvlsaPPDGVIEITLELVEEALQrrALRYDKdgdeh 252
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 818621560 228 ----------VRvlsdhlqDSNAKGAIDYIGKLIEAGVDL 257
Cdd:COG2256 253 ydlisafiksIR-------GSDPDAALYWLARMLEAGEDP 285
|
|
| PRK07399 |
PRK07399 |
DNA polymerase III subunit delta'; Validated |
15-208 |
7.45e-29 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236011 [Multi-domain] Cd Length: 314 Bit Score: 113.46 E-value: 7.45e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 15 WEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIAR-----LLAKSVGCSNL----------DLL--------- 70
Cdd:PRK07399 3 FANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALcfiegLLSQGSPSKNIrrrleegnhpDLLwveptyqhq 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 71 ---------EIDAASNRGIDEIR--QLRDGIKF---APTAGKYKVFIIDEAHQLTKEAFNALLKTLEEpPAHAIFILATT 136
Cdd:PRK07399 83 gklitaseaEEAGLKRKAPPQIRleQIREIKRFlsrPPLEAPRKVVVIEDAETMNEAAANALLKTLEE-PGNGTLILIAP 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 818621560 137 EAHKVPATIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDAlrLVASyADGSyrdAESMLEQLRIWNE 208
Cdd:PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILNINFPE--LLAL-AQGS---PGAAIANIEQLQS 227
|
|
| PRK08058 |
PRK08058 |
DNA polymerase III subunit delta'; Validated |
13-168 |
2.29e-28 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181214 [Multi-domain] Cd Length: 329 Bit Score: 112.33 E-value: 2.29e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 13 QSWEEIIG-QEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCSNL---------------------DLL 70
Cdd:PRK08058 2 MTWEQLTAlQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERngvepcgtctnckridsgnhpDVH 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 71 EI--DAASNRgIDEIRQLRDgiKFAPTA--GKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVPATIV 146
Cdd:PRK08058 82 LVapDGQSIK-KDQIRYLKE--EFSKSGveSNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTIL 158
|
170 180
....*....|....*....|..
gi 818621560 147 SRVQQFTFKKLAITDIVKKLQK 168
Cdd:PRK08058 159 SRCQVVEFRPLPPESLIQRLQE 180
|
|
| PRK05564 |
PRK05564 |
DNA polymerase III subunit delta'; Validated |
14-330 |
9.74e-26 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180132 [Multi-domain] Cd Length: 313 Bit Score: 104.73 E-value: 9.74e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 14 SWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIAR-----LLAKSVGCSNLDLLEIDAASNR--GIDEIRQL 86
Cdd:PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKeialkILGKSQQREYVDIIEFKPINKKsiGVDDIRNI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 87 RDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVPATIVSRVQQFTFKKLAITDIvkkl 166
Cdd:PRK05564 82 IEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEI---- 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 167 QKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENMITKEDIEEllgaidfekvrvlsdhLQDSNAKGAIDY 246
Cdd:PRK05564 158 EKFISYKYNDIKEEEKKSAIAFSDGIPGKVEKFIEDDSLKNIRNMSLEILKD----------------IKKSNINILLKY 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 247 IGKLIEAGVDLEVFAKAFINHLRKIMLIKvdsslvDLMSQELTV--DQVEIVKKQAESFSLNNVAQAIKIFTNARNDIKR 324
Cdd:PRK05564 222 ENFLIKYKENWEEILTCILSYIRDSLLYK------ETGNEELIIniDKIEDIKHISEKFSYKKLNKMIEIINDTRDNLSS 295
|
....*.
gi 818621560 325 SPIPSL 330
Cdd:PRK05564 296 NVNPTL 301
|
|
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
9-196 |
6.29e-24 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 99.80 E-value: 6.29e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 9 KYRPQSWEEIIGQEHIVRTLTNALKLGRVNHaYLFSGPRGTGKTTIARLLAKSVGCSNLD--LLEIDAASNRGIDEIRql 86
Cdd:PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIARDGNMPN-LILSGPPGTGKTTSILALAHELLGPNYKeaVLELNASDDRGIDVVR-- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 87 rDGIK-FAPT-----AGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVPATIVSRVQQFTFKKLAIT 160
Cdd:PLN03025 83 -NKIKmFAQKkvtlpPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQ 161
|
170 180 190
....*....|....*....|....*....|....*.
gi 818621560 161 DIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDA 196
Cdd:PLN03025 162 EILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQA 197
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
1-233 |
7.63e-22 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 94.29 E-value: 7.63e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 1 MGNLVLYRKYRPQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCsnlDLLEIDAASNRgI 80
Cdd:PHA02544 6 PNEFMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA---EVLFVNGSDCR-I 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 81 DEIRQlrDGIKFAPTA---GKYKVFIIDEAHQL-TKEAFNALLKTLEEPPAHAIFILATTEAHKVPATIVSRVQQFTF-- 154
Cdd:PHA02544 82 DFVRN--RLTRFASTVsltGGGKVIIIDEFDRLgLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFgv 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 155 ----KKLAI-TDIVKKLQKIVEAEKIKINddaLRLVASYADGSYRDAESMLEQLRIWNEN---------MITKEDIEELL 220
Cdd:PHA02544 160 ptkeEQIEMmKQMIVRCKGILEAEGVEVD---MKVLAALVKKNFPDFRRTINELQRYASTgkidagilsEVTNSDIDDVV 236
|
250
....*....|....*.
gi 818621560 221 GAI---DFEKVRVLSD 233
Cdd:PHA02544 237 EALkakDFKAVRALAP 252
|
|
| PRK09112 |
PRK09112 |
DNA polymerase III subunit delta'; Validated |
12-196 |
2.39e-21 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 169667 [Multi-domain] Cd Length: 351 Bit Score: 93.18 E-value: 2.39e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 12 PQSWEEIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVgCSNLD-------LLEIDAAS-------- 76
Cdd:PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHI-LSHPDpaeapetLADPDPASpvwrqiaq 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 77 ---------NRGIDE----------IRQLRDGIKF---APTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILA 134
Cdd:PRK09112 98 gahpnllhiTRPFDEktgkfktaitVDEIRRVGHFlsqTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILI 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 818621560 135 TTEAHKVPATIVSRVQQFTFKKLAITDIVKKLQKIveAEKIKINDDALRLVASYADGSYRDA 196
Cdd:PRK09112 178 SHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHL--GSSQGSDGEITEALLQRSKGSVRKA 237
|
|
| PRK07940 |
PRK07940 |
DNA polymerase III subunit delta'; Validated |
15-150 |
6.99e-21 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236134 [Multi-domain] Cd Length: 394 Bit Score: 92.28 E-value: 6.99e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 15 WEEIIGQEHIVRTLTNA---------LKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCSNLDL---------------- 69
Cdd:PRK07940 4 WDDLVGQEAVVAELRAAaraaradvaAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEpgcgecracrtvlagt 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 70 -----------LEIdaasnrGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEA 138
Cdd:PRK07940 84 hpdvrvvapegLSI------GVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSP 157
|
170
....*....|..
gi 818621560 139 HKVPATIVSRVQ 150
Cdd:PRK07940 158 EDVLPTIRSRCR 169
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
11-256 |
2.15e-20 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 92.43 E-value: 2.15e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 11 RPQSWEEIIGQEHIV---RTLTNALKLGRVNHAyLFSGPRGTGKTTIARLLAKSVGC--SNLDlleidaASNRGIDEIR- 84
Cdd:PRK13341 23 RPRTLEEFVGQDHILgegRLLRRAIKADRVGSL-ILYGPPGVGKTTLARIIANHTRAhfSSLN------AVLAGVKDLRa 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 85 QLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEppAHAIFILATTE--AHKVPATIVSRVQQFTFKKLAITDI 162
Cdd:PRK13341 96 EVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN--GTITLIGATTEnpYFEVNKALVSRSRLFRLKSLSDEDL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 163 VKKLQKIVEAE-------KIKINDDALRLVASYADGsyrDAESMLEQLRIWNENMITKED-IEELLGAIDFEKVR---VL 231
Cdd:PRK13341 174 HQLLKRALQDKergygdrKVDLEPEAEKHLVDVANG---DARSLLNALELAVESTPPDEDgLIDITLAIAEESIQqraVL 250
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 818621560 232 SD-----H----------LQDSNAKGAIDYIGKLIEAGVD 256
Cdd:PRK13341 251 YDkegdaHfdtisafiksLRGSDPDAALYWLARMVEAGED 290
|
|
| PRK07471 |
PRK07471 |
DNA polymerase III subunit delta'; Validated |
17-192 |
3.15e-19 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236022 [Multi-domain] Cd Length: 365 Bit Score: 87.39 E-value: 3.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 17 EIIGQEHIVRTLTNALKLGRVNHAYLFSGPRGTGKTT----IAR-LLAKSVGCSNL------------------------ 67
Cdd:PRK07471 20 ALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATlayrMARfLLATPPPGGDGavppptslaidpdhpvarriaaga 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 68 --DLLEIDAASNRG---------IDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATT 136
Cdd:PRK07471 100 hgGLLTLERSWNEKgkrlrtvitVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSH 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 818621560 137 EAHKVPATIVSRVQQFTFKKLAITDIVKKL-QKIVEAEkikinDDALRLVASYADGS 192
Cdd:PRK07471 180 APARLLPTIRSRCRKLRLRPLAPEDVIDALaAAGPDLP-----DDPRAALAALAEGS 231
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
9-221 |
7.57e-19 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 87.28 E-value: 7.57e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 9 KYRPQSWEEIIGQEHIVRTLT---NALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGcsnLDLLEIDAASNRGIDEIRQ 85
Cdd:PRK04195 7 KYRPKTLSDVVGNEKAKEQLRewiESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG---WEVIELNASDQRTADVIER 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 86 --LRDGIKFAPTAGKYKVFIIDEAHQLTK-------EAFNALLKTLEEPpahaiFILATTEAHKVP-ATIVSRVQQFTFK 155
Cdd:PRK04195 84 vaGEAATSGSLFGARRKLILLDEVDGIHGnedrggaRAILELIKKAKQP-----IILTANDPYDPSlRELRNACLMIEFK 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 818621560 156 KLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENmITKEDIEELLG 221
Cdd:PRK04195 159 RLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEGYGK-LTLEDVKTLGR 223
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
19-136 |
3.59e-17 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 77.57 E-value: 3.59e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 19 IGQEHIVRTLTNALKLGRVNHaYLFSGPRGTGKTTIARLLAKSVGCSNLDLLEIDAASNRGIDEIR-----QLRDGIKFA 93
Cdd:cd00009 1 VGQEEAIEALREALELPPPKN-LLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAelfghFLVRLLFEL 79
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 818621560 94 PTAGKYKVFIIDEAHQLTKEAFNALLKTLEE------PPAHAIFILATT 136
Cdd:cd00009 80 AEKAKPGVLFIDEIDSLSRGAQNALLRVLETlndlriDRENVRVIGATN 128
|
|
| PRK05707 |
PRK05707 |
DNA polymerase III subunit delta'; Validated |
35-154 |
1.22e-16 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180215 [Multi-domain] Cd Length: 328 Bit Score: 79.36 E-value: 1.22e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 35 GRVNHAYLFSGPRGTGKTTIARLLAKSVGCS------------------------NLDLLEIDAASNRGIDEIRQLRDGI 90
Cdd:PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEapqgggacgsckgcqllragshpdNFVLEPEEADKTIKVDQVRELVSFV 98
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 818621560 91 KFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVPATIVSRVQQFTF 154
Cdd:PRK05707 99 VQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQAC 162
|
|
| PRK08769 |
PRK08769 |
DNA polymerase III subunit delta'; Validated |
31-155 |
9.36e-16 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181551 [Multi-domain] Cd Length: 319 Bit Score: 76.92 E-value: 9.36e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 31 ALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCSNL------------------DLLEIDAASNRG---------IDEI 83
Cdd:PRK08769 19 ALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPdpaaaqrtrqliaagthpDLQLVSFIPNRTgdklrteivIEQV 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 818621560 84 RQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVPATIVSRVQQFTFK 155
Cdd:PRK08769 99 REISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFK 170
|
|
| HLD_clamp_pol_III_gamma_tau |
cd18137 |
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit ... |
161-221 |
1.22e-15 |
|
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit gamma/tau is part of the DNA polymerase III holoenzyme. Gamma and tau subunits are isoforms, both containing the helical lid domain. Gamma interacts with the delta subunit to transfer the beta subunit on the DNA while tau serves as a scaffold to help in the dimerization of the core complex. Both are members of the clamp-loader clade of the AAA+ superfamily.
Pssm-ID: 350839 [Multi-domain] Cd Length: 65 Bit Score: 70.61 E-value: 1.22e-15
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 818621560 161 DIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENMITKEDIEELLG 221
Cdd:cd18137 5 DIVGRLAHILEKEGIEIEDEALELIARAAEGSMRDALSLLDQAIAFGGGRVTLDDVREMLG 65
|
|
| PRK08699 |
PRK08699 |
DNA polymerase III subunit delta'; Validated |
36-152 |
1.23e-15 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181538 [Multi-domain] Cd Length: 325 Bit Score: 76.45 E-value: 1.23e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 36 RVNHAYLFSGPRGTGKTTIARLLAKSVGC----------------------SNLDLLEIDAASNR----------GIDEI 83
Cdd:PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCetpapghkpcgecmschlfgqgSHPDFYEITPLSDEpengrkllqiKIDAV 98
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 818621560 84 RQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVPATIVSRVQQF 152
Cdd:PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKM 167
|
|
| HolA |
COG1466 |
DNA polymerase III, delta subunit [Replication, recombination and repair]; |
97-328 |
1.66e-14 |
|
DNA polymerase III, delta subunit [Replication, recombination and repair];
Pssm-ID: 441075 [Multi-domain] Cd Length: 305 Bit Score: 72.98 E-value: 1.66e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 97 GKYKVFIIDEAHQLTK--EAFNALLKTLEEPPAHAIFILAT---TEAHKVPATIVSRVQQFTFKKLAITDIVKKLQKIVE 171
Cdd:COG1466 61 GERRLVIVRNAEFLKKpgEGLEALEAYLANPPPDTVLVLTAgklDKRKKLFKALEKAGVVVECYPLKERELPAWIRQRLK 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 172 AEKIKINDDALRLVASYADGSYRDAESMLEQLRI--WNENMITKEDIEELLGAIDFEKVRVLSDHLQDSNAKGAIDYIGK 249
Cdd:COG1466 141 AAGLRIDPDAAQLLAERVGGDLLALAQELEKLALyaGDGGTITLEDVEALVGDSAEFNVFDLADALLAGDAARALRILRR 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 250 LIEAGVDLEVFAKAFINHLRKIMLIKVDSSL---VDLMSQELTVD--QVEIVKKQAESFSLNNVAQAIKIFTNARNDIKR 324
Cdd:COG1466 221 LLAEGEEPVLILAALARQFRLLLQVKALLAQgksLAEIAKELGVPpfRVKLALRALRRWSLERLARALQLLAEADLALKG 300
|
....
gi 818621560 325 SPIP 328
Cdd:COG1466 301 GAAD 304
|
|
| PRK06871 |
PRK06871 |
DNA polymerase III subunit delta'; Validated |
22-150 |
2.80e-14 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180738 [Multi-domain] Cd Length: 325 Bit Score: 72.46 E-value: 2.80e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 22 EHIVRTLTNALKLGRVNHAYLFSGPRGTGKTTIARLLAKSVGC---------------------SNLDLLEIDAASNR-- 78
Cdd:PRK06871 8 QPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCqtpqgdqpcgqchschlfqagNHPDFHILEPIDNKdi 87
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 818621560 79 GIDEIRQLRDGI-KFAPTAGKyKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVPATIVSRVQ 150
Cdd:PRK06871 88 GVDQVREINEKVsQHAQQGGN-KVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQ 159
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
52-201 |
9.05e-14 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 72.18 E-value: 9.05e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 52 TTIARLLAKSVGCSNL--DLLEIDAASNRGIDEIR-QLRDGIKFAPTAG-KYKVFIIDEAHQLTKEAFNALLKTLEEPPA 127
Cdd:PRK04132 580 TTAALALARELFGENWrhNFLELNASDERGINVIReKVKEFARTKPIGGaSFKIIFLDEADALTQDAQQALRRTMEMFSS 659
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 818621560 128 HAIFILATTEAHKVPATIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLE 201
Cdd:PRK04132 660 NVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQ 733
|
|
| PRK05917 |
PRK05917 |
DNA polymerase III subunit delta'; Validated |
80-148 |
2.85e-13 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 102059 [Multi-domain] Cd Length: 290 Bit Score: 69.05 E-value: 2.85e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 818621560 80 IDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVPATIVSR 148
Cdd:PRK05917 77 IETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSR 145
|
|
| PRK07276 |
PRK07276 |
DNA polymerase III subunit delta'; Validated |
32-206 |
3.51e-13 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180916 [Multi-domain] Cd Length: 290 Bit Score: 68.89 E-value: 3.51e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 32 LKLGRVNHAYLFSGprGTGKTTIARLLAKSVGCSNLD------------LLE--------IDAASNRGI--DEIRQLRDG 89
Cdd:PRK07276 18 LEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEgvlpcghcrscrLIEqgefsdvtVIEPQGQVIktDTIRELVKN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 90 IKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVPATIVSRVQQFTFKKlaitdIVKKLQKI 169
Cdd:PRK07276 96 FSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-----NEAYLIQL 170
|
170 180 190
....*....|....*....|....*....|....*..
gi 818621560 170 VEAEKIkINDDAlRLVASYADgSYRDAESMLEQLRIW 206
Cdd:PRK07276 171 LEQKGL-LKTQA-ELLAKLAQ-STSEAEKLAQNKKFL 204
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
15-237 |
5.14e-13 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 67.99 E-value: 5.14e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 15 WEEIIGQE-------HIVRTLTNALKLGRVN----HAYLFSGPRGTGKTTIARLLAKSvgcSNLDLLEI----------- 72
Cdd:COG1223 1 LDDVVGQEeakkklkLIIKELRRRENLRKFGlwppRKILFYGPPGTGKTMLAEALAGE---LKLPLLTVrldsligsylg 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 73 DAASNrgideIRQLRDGIKFAPTagkykVFIIDEAHQL------------TKEAFNALLKTLEEPPAHAIFILATTEAHK 140
Cdd:COG1223 78 ETARN-----LRKLFDFARRAPC-----VIFFDEFDAIakdrgdqndvgeVKRVVNALLQELDGLPSGSVVIAATNHPEL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 141 VPATIVSRVQQF-TFKKLAITDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLR----IWNENMITKED 215
Cdd:COG1223 148 LDSALWRRFDEViEFPLPDKEERKEILELNLKKFPLPFELDLKKLAKKLEGLSGADIEKVLKTALkkaiLEDREKVTKED 227
|
250 260
....*....|....*....|..
gi 818621560 216 IEEllgAIDFEKVRVLSDHLQD 237
Cdd:COG1223 228 LEE---ALKQRKERKKEPKKEG 246
|
|
| PRK06964 |
PRK06964 |
DNA polymerase III subunit delta'; Validated |
36-152 |
8.70e-13 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235898 [Multi-domain] Cd Length: 342 Bit Score: 68.25 E-value: 8.70e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 36 RVNHAYLFSGPRGTGKTTIARLLAKSVGCSNL-----------------------------DLLEIDAASNRG------- 79
Cdd:PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPqpdgepcgtcaacnwfaqgnhpdyrivrpEALAAEAPGAADeakeada 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 80 ---------------IDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVPAT 144
Cdd:PRK06964 99 deggkktkapskeikIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPT 178
|
....*...
gi 818621560 145 IVSRVQQF 152
Cdd:PRK06964 179 ILSRCRQF 186
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
8-226 |
1.20e-12 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 68.40 E-value: 1.20e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 8 RKYRPQSWEEIIGQEHIVRTLTNA-------------LKLGRVNHAyLFSGPRGTGKTTIARLLAKSVGcsnLDLLEIDA 74
Cdd:COG0464 149 LELREAILDDLGGLEEVKEELRELvalplkrpelreeYGLPPPRGL-LLYGPPGTGKTLLARALAGELG---LPLIEVDL 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 75 ASNRG-------------IDEIRQLRDGIKFaptagkykvfiIDEAHQL-----------TKEAFNALLKTLEEPPAHAI 130
Cdd:COG0464 225 SDLVSkyvgeteknlrevFDKARGLAPCVLF-----------IDEADALagkrgevgdgvGRRVVNTLLTEMEELRSDVV 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 131 FILATTEAHKVPATIVSRVQ-QFTFKKL---AITDIVKKLqkiveAEKIKINDDA-LRLVASYADG-SYRDAESMLEQLR 204
Cdd:COG0464 294 VIAATNRPDLLDPALLRRFDeIIFFPLPdaeERLEIFRIH-----LRKRPLDEDVdLEELAEATEGlSGADIRNVVRRAA 368
|
250 260
....*....|....*....|....*.
gi 818621560 205 I----WNENMITKEDIEELLGAIDFE 226
Cdd:COG0464 369 LqalrLGREPVTTEDLLEALEREDIF 394
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
41-150 |
2.04e-12 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 63.38 E-value: 2.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 41 YLFSGPRGTGKTTIARLLAKSvgcSNLDLLEIDAAS--NRGIDE-IRQLRDGIKFAPTAGKyKVFIIDEAHQLTK----- 112
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKE---LGAPFIEISGSElvSKYVGEsEKRLRELFEAAKKLAP-CVIFIDEIDALAGsrgsg 76
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 818621560 113 ------EAFNALLKTLEEPPAHA---IFILATTEAHKVPATIVSRVQ 150
Cdd:pfam00004 77 gdsesrRVVNQLLTELDGFTSSNskvIVIAATNRPDKLDPALLGRFD 123
|
|
| PRK06090 |
PRK06090 |
DNA polymerase III subunit delta'; Validated |
80-203 |
3.16e-12 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180394 [Multi-domain] Cd Length: 319 Bit Score: 66.37 E-value: 3.16e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 80 IDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVPATIVSRVQQFTFKKLAI 159
Cdd:PRK06090 90 VEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPST 169
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 818621560 160 TDIVKKLQK---IVEAEKIKINDDA-LRLVASYADGSYRDAESMLEQL 203
Cdd:PRK06090 170 AQAMQWLKGqgiTVPAYALKLNMGSpLKTLAMMKEGGLEKYHKLERQL 217
|
|
| PRK07993 |
PRK07993 |
DNA polymerase III subunit delta'; Validated |
76-148 |
6.84e-12 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181190 [Multi-domain] Cd Length: 334 Bit Score: 65.47 E-value: 6.84e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 818621560 76 SNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVPATIVSR 148
Cdd:PRK07993 86 SSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSR 158
|
|
| PRK07132 |
PRK07132 |
DNA polymerase III subunit delta'; Validated |
96-166 |
1.25e-10 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180855 [Multi-domain] Cd Length: 299 Bit Score: 61.66 E-value: 1.25e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 818621560 96 AGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVPATIVSRVQQFTFKKLAITDIVKKL 166
Cdd:PRK07132 88 QSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKL 158
|
|
| ruvB |
PRK00080 |
Holliday junction branch migration DNA helicase RuvB; |
11-224 |
1.00e-08 |
|
Holliday junction branch migration DNA helicase RuvB;
Pssm-ID: 234619 [Multi-domain] Cd Length: 328 Bit Score: 55.91 E-value: 1.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 11 RPQSWEEIIGQEHIVRTL----TNALKLGRV-NHAyLFSGPRGTGKTTIARLLAKSVGcSNL------------DLLEId 73
Cdd:PRK00080 20 RPKSLDEFIGQEKVKENLkifiEAAKKRGEAlDHV-LLYGPPGLGKTTLANIIANEMG-VNIritsgpalekpgDLAAI- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 74 aASNrgIDEirqlRDgikfaptagkykVFIIDEAHQLTKEAFNALLKTLE----------EPPAHAI------FIL--AT 135
Cdd:PRK00080 97 -LTN--LEE----GD------------VLFIDEIHRLSPVVEEILYPAMEdfrldimigkGPAARSIrldlppFTLigAT 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 136 TEAHKVPA------TIVSRVQQFTfkklaitdiVKKLQKIVE--AEK--IKINDDALRLVASYADGSYRDAESMLEQLR- 204
Cdd:PRK00080 158 TRAGLLTSplrdrfGIVQRLEFYT---------VEELEKIVKrsARIlgVEIDEEGALEIARRSRGTPRIANRLLRRVRd 228
|
250 260
....*....|....*....|...
gi 818621560 205 ---IWNENMITKEDIEELLGAID 224
Cdd:PRK00080 229 faqVKGDGVITKEIADKALDMLG 251
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
9-106 |
2.50e-07 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 52.53 E-value: 2.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 9 KYRPQSWEEIIGQEHIVRTLTNALKLGRVNHaYLFSGPRGTGKttiarllaksvgCSNLDLLEIDAASNRGIDEIRQLRD 88
Cdd:PRK04132 12 KYRPQRLDDIVGQEHIVKRLKHYVKTGSMPH-LLFAGPPGVGK------------CLTGDTKVIANGELFEIGELVEKIS 78
|
90
....*....|....*....
gi 818621560 89 GIKFAPTAGK-YKVFIIDE 106
Cdd:PRK04132 79 NGKFGPTPVNgLKVLGIDE 97
|
|
| PRK08485 |
PRK08485 |
DNA polymerase III subunit delta'; Validated |
65-229 |
4.18e-07 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236274 [Multi-domain] Cd Length: 206 Bit Score: 50.03 E-value: 4.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 65 SNLDLLEIDAASNRGIDEIR----------QLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILA 134
Cdd:PRK08485 11 SDFEESKEELINEFGKKNLRffikeefkieDAKEVIAEAYIAESEEKIIVIAAPSYGIEAQNALLKILEEPPKNICFIIV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 135 TTEAHKVPATIVSRVQqftfkklaitdIVKKLQKIveaEKIKINDDALRLvasyadgSYRDAESMLEQLRiwNENMITKE 214
Cdd:PRK08485 91 AKSKNLLLPTIRSRLI-----------IEKRKQKK---PVKPLDLDLKKL-------DLKDIYEFLKELE--KENKLSKE 147
|
170
....*....|....*
gi 818621560 215 DIEELLGAIDFEKVR 229
Cdd:PRK08485 148 ELKELIESLLKECVK 162
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
42-141 |
4.46e-07 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 48.49 E-value: 4.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 42 LFSGPRGTGKTTIARLLAKSVGCSNLDLLEIDAASNRGIDEIRQ-------------------LRDGIKFAPTAGKYKVF 102
Cdd:pfam13401 9 VLTGESGTGKTTLLRRLLEQLPEVRDSVVFVDLPSGTSPKDLLRallralglplsgrlskeelLAALQQLLLALAVAVVL 88
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 818621560 103 IIDEAHQLTKEAFNALLKTLEEPPAHAIFILA-TTEAHKV 141
Cdd:pfam13401 89 IIDEAQHLSLEALEELRDLLNLSSKLLQLILVgTPELREL 128
|
|
| COG2842 |
COG2842 |
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons]; ... |
42-218 |
9.58e-07 |
|
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons];
Pssm-ID: 442090 [Multi-domain] Cd Length: 254 Bit Score: 49.18 E-value: 9.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 42 LFSGPRGTGKTTIARLLAK----------SVGCSNLDLLE-------IDAASNRGIDEIRQLRDgiKFAPTAGkykVFII 104
Cdd:COG2842 54 VVYGESGVGKTTAAREYANrnpnviyvtaSPSWTSKELLEelaeelgIPAPPGTIADLRDRILE--RLAGTGR---LLII 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 105 DEAHQLTKEAFNaLLKTL-EEppAHAIFILATTEahKVPATI------VSRV-QQFTFKKLAITDIvkklQKIVEAEKIK 176
Cdd:COG2842 129 DEADHLKPKALE-ELRDIhDE--TGVGVVLIGME--RLPAKLkryeqlYSRIgFWVEFKPLSLEDV----RALAEAWGEL 199
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 818621560 177 INDDALRLVASYADGSYRDAE----SMLEQLRIWNENMITKEDIEE 218
Cdd:COG2842 200 TDPDLLELLHRITRGNLRRLDrtlrLAARAAKRNGLTKITLDHVRA 245
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
38-133 |
1.07e-06 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 47.75 E-value: 1.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 38 NHAYLFSGPRGTGKTTIARLLAKSVGCSNLDLLEIDAASNRGIDEIRQLRDGIKFAPTAG----------------KYKV 101
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGsgelrlrlalalarklKPDV 81
|
90 100 110
....*....|....*....|....*....|..
gi 818621560 102 FIIDEAHQLTKEAFNALLKTLEEPPAHAIFIL 133
Cdd:smart00382 82 LILDEITSLLDAEQEALLLLLEELRLLLLLKS 113
|
|
| RuvB_N |
pfam05496 |
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the ... |
11-63 |
1.61e-06 |
|
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Pssm-ID: 398900 [Multi-domain] Cd Length: 159 Bit Score: 47.49 E-value: 1.61e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 818621560 11 RPQSWEEIIGQEHIVRTLTNALKLGR-----VNHAyLFSGPRGTGKTTIARLLAKSVG 63
Cdd:pfam05496 2 RPRTLDEYIGQEKVKENLKIFIEAAKqrgeaLDHV-LLYGPPGLGKTTLANIIANEMG 58
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
12-136 |
2.11e-06 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 46.89 E-value: 2.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 12 PQSWEEIIGQEHIVRTLTNALKLGRVNhaYLFSGPRGTGKTTIARLLAKSvgcSNLDLLEIDAAS--NRGIDE-IRQLRD 88
Cdd:cd19481 2 KASLREAVEAPRRGSRLRRYGLGLPKG--ILLYGPPGTGKTLLAKALAGE---LGLPLIVVKLSSllSKYVGEsEKNLRK 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 818621560 89 GIKFAPTAGKyKVFIIDEAHQL------------TKEAFNALLKTLEEPPAHA-IFILATT 136
Cdd:cd19481 77 IFERARRLAP-CILFIDEIDAIgrkrdssgesgeLRRVLNQLLTELDGVNSRSkVLVIAAT 136
|
|
| MoxR |
COG0714 |
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ... |
18-65 |
3.66e-06 |
|
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 440478 [Multi-domain] Cd Length: 292 Bit Score: 47.85 E-value: 3.66e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 818621560 18 IIGQEHIVRTLTNALKLGRvnHAyLFSGPRGTGKTTIARLLAKSVGCS 65
Cdd:COG0714 14 YVGQEELIELVLIALLAGG--HL-LLEGVPGVGKTTLAKALARALGLP 58
|
|
| RuvB |
COG2255 |
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, ... |
11-63 |
3.92e-06 |
|
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, recombination and repair];
Pssm-ID: 441856 [Multi-domain] Cd Length: 337 Bit Score: 48.15 E-value: 3.92e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 818621560 11 RPQSWEEIIGQEHIVRTL----TNALKLGRV-NHAyLFSGPRGTGKTTIARLLAKSVG 63
Cdd:COG2255 23 RPKRLDEYIGQEKVKENLkifiEAAKKRGEAlDHV-LLYGPPGLGKTTLAHIIANEMG 79
|
|
| PRK06581 |
PRK06581 |
DNA polymerase III subunit delta'; Validated |
75-148 |
5.71e-06 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235833 [Multi-domain] Cd Length: 263 Bit Score: 47.15 E-value: 5.71e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 818621560 75 ASNRGIDEIRQLRDGIKFAPTAGKYKVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVPATIVSR 148
Cdd:PRK06581 66 AKNISIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSR 139
|
|
| PRK05818 |
PRK05818 |
DNA polymerase III subunit delta'; Validated |
100-178 |
6.65e-06 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235618 [Multi-domain] Cd Length: 261 Bit Score: 46.75 E-value: 6.65e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 818621560 100 KVFIIDEAHQLTKEAFNALLKTLEEPPAHAIFILATTEAHKVPATIVSRVQQFTFKKLAITDIVKKLQKIVEAEKIKIN 178
Cdd:PRK05818 90 KIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKVESNDRYFQYILLS 168
|
|
| DNA_pol3_gamma3 |
pfam12169 |
DNA polymerase III subunits gamma and tau domain III; This domain family is found in bacteria, ... |
211-340 |
9.17e-06 |
|
DNA polymerase III subunits gamma and tau domain III; This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with pfam00004. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau.
Pssm-ID: 432379 [Multi-domain] Cd Length: 143 Bit Score: 44.95 E-value: 9.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 211 ITKEDIEELLGAIDFEKVRVLSDHLQDSNAKGAIDYIGKLIEAGVDLEVFAKAFINHLRKIMLIKV--DSSLVDLMSQEl 288
Cdd:pfam12169 1 VTAAQVRDMLGLADRGRVLDLLEALLEGDAAAALAELRDQYDAGADPVVVLRDLLELIHNLTRLKVapDAADDLLLPEE- 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 818621560 289 tvdQVEIVKKQAESFSLNNVAQAIKIFTNARNDIKRSPIPSLPIELAVVEII 340
Cdd:pfam12169 80 ---ERARLAELAEKLSPEVLHRLWQMLLKGIEEVPNAPDPRQAAEMVLLRLA 128
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
45-124 |
1.51e-05 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 44.21 E-value: 1.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 45 GPRGTGKTTIARLLAKSVGCSNLDLLEIDAASNRgiDEIRQLRD----GIKFAP----TAGKYK-VFIIDEAHQLTKEAF 115
Cdd:pfam07728 6 GPPGTGKTELAERLAAALSNRPVFYVQLTRDTTE--EDLFGRRNidpgGASWVDgplvRAAREGeIAVLDEINRANPDVL 83
|
....*....
gi 818621560 116 NALLKTLEE 124
Cdd:pfam07728 84 NSLLSLLDE 92
|
|
| ExeA |
COG3267 |
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, ... |
42-118 |
2.02e-05 |
|
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442498 [Multi-domain] Cd Length: 261 Bit Score: 45.55 E-value: 2.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 42 LFSGPRGTGKTTIARLLAKSVG-------CSN------------LDLLEIDAASNRGIDEIRQLRDGIKFAPTAGKYKVF 102
Cdd:COG3267 47 VLTGEVGTGKTTLLRRLLERLPddvkvayIPNpqlspaellraiADELGLEPKGASKADLLRQLQEFLLELAAAGRRVVL 126
|
90
....*....|....*.
gi 818621560 103 IIDEAHQLTKEAFNAL 118
Cdd:COG3267 127 IIDEAQNLPPETLEEL 142
|
|
| AAA_14 |
pfam13173 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
38-132 |
3.86e-05 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 463799 [Multi-domain] Cd Length: 128 Bit Score: 42.57 E-value: 3.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 38 NHAYLFSGPRGTGKTTIARLLAKSVGCS------NLDLLEIDAASNRGIDEIrqLRDGIKfaptaGKYKVFIIDEAhQLT 111
Cdd:pfam13173 2 RKILVITGPRQVGKTTLLLQLIKELLPPenilyiNLDDPRLLKLADFELLEL--FLELLY-----PGKTYLFLDEI-QRV 73
|
90 100
....*....|....*....|.
gi 818621560 112 KEAFNALLKTLEEPPAHAIFI 132
Cdd:pfam13173 74 PDWELALKRLYDDGPNGRVIL 94
|
|
| RecA-like_ClpB_Hsp104-like |
cd19499 |
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and ... |
16-73 |
3.88e-05 |
|
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and eukaryotic Heat shock protein 104 (Hsp104) are ATP-dependent molecular chaperones and essential proteins of the heat-shock response. ClpB/Hsp104 ATPases, in concert with the DnaK/Hsp70 chaperone system, disaggregate and reactivate aggregated proteins. This RecA-like_ClpB_Hsp104_like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410907 [Multi-domain] Cd Length: 178 Bit Score: 43.71 E-value: 3.88e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 818621560 16 EEIIGQEHIVRTLTNALKLGRVNHA--------YLFSGPRGTGKTTIARLLAKSVGCSNLDLLEID 73
Cdd:cd19499 11 ERVVGQDEAVKAVSDAIRRARAGLSdpnrpigsFLFLGPTGVGKTELAKALAELLFGDEDNLIRID 76
|
|
| COG1373 |
COG1373 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
22-118 |
5.05e-05 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440984 [Multi-domain] Cd Length: 405 Bit Score: 44.55 E-value: 5.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 22 EHIVRTLTNAL-KLGRVNHAYLFSGPRGTGKTTIARLLAKSVGCS---NLDLLEIDAASNRGIDEIRQLrdgikFAPTAG 97
Cdd:COG1373 3 IMIKRKILDKLlKLLDNRKAVVITGPRQVGKTTLLKQLAKELENIlyiNLDDPRLRALAEEDPDDLLEA-----LKELYP 77
|
90 100
....*....|....*....|.
gi 818621560 98 KYKVFIIDEAhQLTKEAFNAL 118
Cdd:COG1373 78 GKTYLFLDEI-QRVPEWEDAL 97
|
|
| clpC |
CHL00095 |
Clp protease ATP binding subunit |
16-124 |
6.74e-05 |
|
Clp protease ATP binding subunit
Pssm-ID: 214361 [Multi-domain] Cd Length: 821 Bit Score: 44.66 E-value: 6.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 16 EEIIGQEHIVRTLTNALKLGRVN--------HAYLFSGPRGTGKTTIARLLAKSVGCSNLDLLEIDAASNR--------- 78
Cdd:CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGlknpnrpiASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMekhtvskli 588
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 818621560 79 -------GIDEIRQLRDGIKFAPtagkYKVFIIDEAHQLTKEAFNALLKTLEE 124
Cdd:CHL00095 589 gsppgyvGYNEGGQLTEAVRKKP----YTVVLFDEIEKAHPDIFNLLLQILDD 637
|
|
| SK |
cd00464 |
Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic ... |
45-83 |
1.11e-04 |
|
Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Pssm-ID: 238260 [Multi-domain] Cd Length: 154 Bit Score: 41.77 E-value: 1.11e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 818621560 45 GPRGTGKTTIARLLAKSVGCSNLDL-LEIDAASNRGIDEI 83
Cdd:cd00464 6 GMMGAGKTTVGRLLAKALGLPFVDLdELIEQRAGMSIPEI 45
|
|
| AroK |
COG0703 |
Shikimate kinase [Amino acid transport and metabolism]; Shikimate kinase is part of the ... |
45-83 |
1.74e-04 |
|
Shikimate kinase [Amino acid transport and metabolism]; Shikimate kinase is part of the Pathway/BioSystem: Aromatic amino acid biosynthesis
Pssm-ID: 440467 [Multi-domain] Cd Length: 165 Bit Score: 41.65 E-value: 1.74e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 818621560 45 GPRGTGKTTIARLLAKSVGCSNLDL-LEIDAASNRGIDEI 83
Cdd:COG0703 5 GMMGAGKSTVGRLLAKRLGLPFVDTdAEIEERAGMSIPEI 44
|
|
| HLD_clamp |
cd18133 |
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit ... |
162-220 |
2.64e-04 |
|
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit complexes that play an important role in DNA replication. They open sliding clamps for assembly and close them around DNA, specifically targeting them to sites where DNA synthesis is initiated and orienting them correctly for replication. The subunits belong to the clamp loader clade of AAA+ superfamily.
Pssm-ID: 350838 [Multi-domain] Cd Length: 65 Bit Score: 38.61 E-value: 2.64e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 162 IVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLR-IWNENMITKEDIEELL 220
Cdd:cd18133 6 LKRRLAAIAEQEKLKLDDAALQALAYISEGDLRKALNALQRAAaLGDDGKISLDRVYQAV 65
|
|
| HLD_clamp_RFC |
cd18140 |
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein ... |
160-219 |
2.91e-04 |
|
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein clamp loader complex that forms a stable ATP-dependent complex with the sliding clamp, PCNA, which binds specifically to primed DNA. RFC subunits belong to the clamp loader clade of the AAA+ superfamily.
Pssm-ID: 350842 [Multi-domain] Cd Length: 63 Bit Score: 38.66 E-value: 2.91e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 160 TDIVKKLQKIVEAEKIKINDDALRLVASYADGSYRDAESMLEQLRIWNENmITKEDIEEL 219
Cdd:cd18140 4 EQIVKRLREICKKEGVKIDEEALEAIAEKSEGDMRKAINDLQAAAAGGGV-ITEEDVYEV 62
|
|
| aroK |
PRK00131 |
shikimate kinase; Reviewed |
45-83 |
1.68e-03 |
|
shikimate kinase; Reviewed
Pssm-ID: 234654 [Multi-domain] Cd Length: 175 Bit Score: 38.63 E-value: 1.68e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 818621560 45 GPRGTGKTTIARLLAKSVGCSNLDL-LEIDAASNRGIDEI 83
Cdd:PRK00131 11 GFMGAGKSTIGRLLAKRLGYDFIDTdHLIEARAGKSIPEI 50
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
17-86 |
1.78e-03 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 38.64 E-value: 1.78e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 818621560 17 EIIGQEHIVRTLTNALK---LGRVNHAYLfSGPRGTGKTTIARLLAKSVGCSNLDLLEIDAASNRGIDEIRQL 86
Cdd:pfam13191 1 RLVGREEELEQLLDALDrvrSGRPPSVLL-TGEAGTGKTTLLRELLRALERDGGYFLRGKCDENLPYSPLLEA 72
|
|
| TIP49 |
COG1224 |
DNA helicase TIP49, TBP-interacting protein [Transcription]; |
101-218 |
3.15e-03 |
|
DNA helicase TIP49, TBP-interacting protein [Transcription];
Pssm-ID: 440837 [Multi-domain] Cd Length: 452 Bit Score: 39.18 E-value: 3.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 101 VFIIDEAHQLTKEAFNALLKTLEEPPAhAIFILATT-----------EA-HKVPATIVSRVqqftfkkLAIT------DI 162
Cdd:COG1224 295 VLFIDDAHMLDIEAFSFLTRAMESELA-PIIILATNrgitkirgtdiESpHGIPLDLLDRL-------LIIPtrpyteDE 366
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 818621560 163 VKKLQKI-VEAEKIKINDDAL-RLVASYADGSYRDAESMLEQLRIW----NENMITKEDIEE 218
Cdd:COG1224 367 IREIIKIrAEEEDIELSDDALeELTKIGVERSLRYAVQLLEPAYIIakrrGRSKVTVEDVEE 428
|
|
| Mg_chelatase |
pfam01078 |
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that ... |
15-58 |
3.58e-03 |
|
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Pssm-ID: 426032 [Multi-domain] Cd Length: 207 Bit Score: 38.29 E-value: 3.58e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 818621560 15 WEEIIGQEHIVRTLTNALKLGrvnHAYLFSGPRGTGKTTIARLL 58
Cdd:pfam01078 2 LADVKGQEQAKRALEIAAAGG---HNLLMIGPPGSGKTMLAKRL 42
|
|
| clpA |
PRK11034 |
ATP-dependent Clp protease ATP-binding subunit; Provisional |
18-123 |
7.86e-03 |
|
ATP-dependent Clp protease ATP-binding subunit; Provisional
Pssm-ID: 236828 [Multi-domain] Cd Length: 758 Bit Score: 38.28 E-value: 7.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 18 IIGQEHIVRTLTNALKLGRVN--------HAYLFSGPRGTGKTTIARLLAKSVGcsnLDLLEIDAAS-------NR---- 78
Cdd:PRK11034 460 VFGQDKAIEALTEAIKMSRAGlghehkpvGSFLFAGPTGVGKTEVTVQLSKALG---IELLRFDMSEymerhtvSRliga 536
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 818621560 79 -----GIDEIRQLRDGIKFAPTAgkykVFIIDEAHQLTKEAFNALLKTLE 123
Cdd:PRK11034 537 ppgyvGFDQGGLLTDAVIKHPHA----VLLLDEIEKAHPDVFNLLLQVMD 582
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
16-234 |
8.02e-03 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 37.91 E-value: 8.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 16 EEIigqEHIVRTLTNALKLGRVNHAYLFsGPRGTGKTTIARLLAK------SVGCSNLDLLEIDAASNRGIDEI-----R 84
Cdd:COG1474 33 EEI---EELASALRPALRGERPSNVLIY-GPTGTGKTAVAKYVLEeleeeaEERGVDVRVVYVNCRQASTRYRVlsrilE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 85 QLRDGIKFAPT-----------------AGKYKVFIIDEAHQLTKEAFNALLKTL----EEPPAHAIFILATTEAHKVPA 143
Cdd:COG1474 109 ELGSGEDIPSTglstdelfdrlyealdeRDGVLVVVLDEIDYLVDDEGDDLLYQLlranEELEGARVGVIGISNDLEFLE 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818621560 144 TIVSRVQqftfKKLAITDIV------KKLQKIVE--AEKI----KINDDALRLVASYA---DGSYRDAesmLEQLRI--- 205
Cdd:COG1474 189 NLDPRVK----SSLGEEEIVfppydaDELRDILEdrAELAfydgVLSDEVIPLIAALAaqeHGDARKA---IDLLRVage 261
|
250 260 270
....*....|....*....|....*....|....*..
gi 818621560 206 ----WNENMITKEDIEELLGAIDF----EKVRVLSDH 234
Cdd:COG1474 262 iaerEGSDRVTEEHVREAREKIERdrllEVLRGLPTH 298
|
|
| HLD_clamp_RarA |
cd18139 |
helical lid domain of recombination factor protein RarA; Recombination factor RarA ... |
157-221 |
8.86e-03 |
|
helical lid domain of recombination factor protein RarA; Recombination factor RarA (Replication associated recombination gene/protein A, also known as MgsA (Maintenance of genome stability A) or Mgs1 in yeast and WRNIP1 in mammals) is a member of the clamp-loader clade of the AAA+ superfamily. It functions as a tetramer. RarA co-localize with the replication fork throughout the cell cycle and may play a role in the rescue of stalled replication forks.
Pssm-ID: 350841 [Multi-domain] Cd Length: 75 Bit Score: 34.53 E-value: 8.86e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 818621560 157 LAITDIVKKLQKIVEAE------KIKINDDALRLVASYADGSYRDAESMLEQLRIWNENM----ITKEDIEELLG 221
Cdd:cd18139 1 LSEEDLEKLLKRALEDKerggdrKVTIDDEALELLAEAADGDARSALNLLELAVLSAEEDggivITLEDLEEVLQ 75
|
|
| |
