NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|797152321|gb|KJY56341|]
View 

hypothetical protein JF76_06490 [Lactobacillus kullabergensis]

Protein Classification

zinc ribbon domain-containing protein( domain architecture ID 10593268)

zinc ribbon domain-containing protein consists of a single zinc ribbon domain

Gene Ontology:  GO:0008270
PubMed:  32851833

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
zf-ribbon_3 pfam13248
zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as ...
 1-25 1.18e-07

zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR. pfam12773.


:

Pssm-ID: 404185 [Multi-domain]  Cd Length: 25  Bit Score: 47.19  E-value: 1.18e-07
                          10        20
                  ....*....|....*....|....*
gi 797152321    1 MKKCPNCGALMEADVNFCTKCGTDL 25
Cdd:pfam13248   1 TVRCPNCGAPVSPDDNVCPYCGTKL 25
DUF6574 super family cl48381
Family of unknown function (DUF6574); This family of proteins is functionally uncharacterized. ...
 68-285 2.11e-06

Family of unknown function (DUF6574); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, mainly Firmicutes. Proteins in this family are typically between 116 and 320 amino acids in length. Many members are thought to contain a zinc ribbon domain.


The actual alignment was detected with superfamily member pfam20214:

Pssm-ID: 466365  Cd Length: 258  Bit Score: 48.41  E-value: 2.11e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 797152321   68 TSERNSQIESQFAQ-PRITPQRSQYNSQPTYSNQGQTINQYQTSNSarkekfnNYWQWCVASWKRPFSELTGESWYGWVT 146
Cdd:pfam20214   2 ESVASEATETTVVQaPAVKPDVVAGNPQNAPQVQTDGASQFKAASS-------DFWNWLVSAWKNPTSEVDTTQYNGLIA 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 797152321  147 ILAEDIVLVLGIY-----------FGMKAVANRYGASTFGLGDTVSGiaFNSTIALLFFSVLFEVIVIGGYYAAYRFIYG 215
Cdd:pfam20214  75 FGLLTLFYTITVFtlarklmgfgsNFVNSISSAFGQSSSSNMSNPVG--LSAFLIILVTFALYLFSLIFSGFVARRFVYQ 152

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 797152321  216 HGKNLL--EFVNSGvHCSNLNLILSVLTFIIMLLGSnngsmAALLFLLIIANFFMGFQVTTLGenLKPVRDK 285
Cdd:pfam20214 153 DTSFTFmkSFAWYG-RLFSLNIPLSALIFLFVLIGS-----FQLAFFLLAVSVLLFGLATTFA--LAPSGNV 216
 
Name Accession Description Interval E-value
zf-ribbon_3 pfam13248
zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as ...
 1-25 1.18e-07

zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR. pfam12773.


Pssm-ID: 404185 [Multi-domain]  Cd Length: 25  Bit Score: 47.19  E-value: 1.18e-07
                          10        20
                  ....*....|....*....|....*
gi 797152321    1 MKKCPNCGALMEADVNFCTKCGTDL 25
Cdd:pfam13248   1 TVRCPNCGAPVSPDDNVCPYCGTKL 25
YvbJ COG4640
Uncharacterized protein YvbJ, contains N-terminal Zn ribbon domain [Function unknown];
1-48 6.92e-07

Uncharacterized protein YvbJ, contains N-terminal Zn ribbon domain [Function unknown];


Pssm-ID: 443678 [Multi-domain]  Cd Length: 445  Bit Score: 50.54  E-value: 6.92e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 797152321   1 MKKCPNCGALMEADVNFCTKCGTDLRNI-NNAQANKSELKPNVNSPIIP 48
Cdd:COG4640    1 MKFCPNCGHKLEDGVKFCPNCGTPLTSKvKQARQAKQKQAQSAVSNTAV 49
DUF6574 pfam20214
Family of unknown function (DUF6574); This family of proteins is functionally uncharacterized. ...
 68-285 2.11e-06

Family of unknown function (DUF6574); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, mainly Firmicutes. Proteins in this family are typically between 116 and 320 amino acids in length. Many members are thought to contain a zinc ribbon domain.


Pssm-ID: 466365  Cd Length: 258  Bit Score: 48.41  E-value: 2.11e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 797152321   68 TSERNSQIESQFAQ-PRITPQRSQYNSQPTYSNQGQTINQYQTSNSarkekfnNYWQWCVASWKRPFSELTGESWYGWVT 146
Cdd:pfam20214   2 ESVASEATETTVVQaPAVKPDVVAGNPQNAPQVQTDGASQFKAASS-------DFWNWLVSAWKNPTSEVDTTQYNGLIA 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 797152321  147 ILAEDIVLVLGIY-----------FGMKAVANRYGASTFGLGDTVSGiaFNSTIALLFFSVLFEVIVIGGYYAAYRFIYG 215
Cdd:pfam20214  75 FGLLTLFYTITVFtlarklmgfgsNFVNSISSAFGQSSSSNMSNPVG--LSAFLIILVTFALYLFSLIFSGFVARRFVYQ 152

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 797152321  216 HGKNLL--EFVNSGvHCSNLNLILSVLTFIIMLLGSnngsmAALLFLLIIANFFMGFQVTTLGenLKPVRDK 285
Cdd:pfam20214 153 DTSFTFmkSFAWYG-RLFSLNIPLSALIFLFVLIGS-----FQLAFFLLAVSVLLFGLATTFA--LAPSGNV 216
 
Name Accession Description Interval E-value
zf-ribbon_3 pfam13248
zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as ...
 1-25 1.18e-07

zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR. pfam12773.


Pssm-ID: 404185 [Multi-domain]  Cd Length: 25  Bit Score: 47.19  E-value: 1.18e-07
                          10        20
                  ....*....|....*....|....*
gi 797152321    1 MKKCPNCGALMEADVNFCTKCGTDL 25
Cdd:pfam13248   1 TVRCPNCGAPVSPDDNVCPYCGTKL 25
YvbJ COG4640
Uncharacterized protein YvbJ, contains N-terminal Zn ribbon domain [Function unknown];
1-48 6.92e-07

Uncharacterized protein YvbJ, contains N-terminal Zn ribbon domain [Function unknown];


Pssm-ID: 443678 [Multi-domain]  Cd Length: 445  Bit Score: 50.54  E-value: 6.92e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 797152321   1 MKKCPNCGALMEADVNFCTKCGTDLRNI-NNAQANKSELKPNVNSPIIP 48
Cdd:COG4640    1 MKFCPNCGHKLEDGVKFCPNCGTPLTSKvKQARQAKQKQAQSAVSNTAV 49
DUF6574 pfam20214
Family of unknown function (DUF6574); This family of proteins is functionally uncharacterized. ...
 68-285 2.11e-06

Family of unknown function (DUF6574); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, mainly Firmicutes. Proteins in this family are typically between 116 and 320 amino acids in length. Many members are thought to contain a zinc ribbon domain.


Pssm-ID: 466365  Cd Length: 258  Bit Score: 48.41  E-value: 2.11e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 797152321   68 TSERNSQIESQFAQ-PRITPQRSQYNSQPTYSNQGQTINQYQTSNSarkekfnNYWQWCVASWKRPFSELTGESWYGWVT 146
Cdd:pfam20214   2 ESVASEATETTVVQaPAVKPDVVAGNPQNAPQVQTDGASQFKAASS-------DFWNWLVSAWKNPTSEVDTTQYNGLIA 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 797152321  147 ILAEDIVLVLGIY-----------FGMKAVANRYGASTFGLGDTVSGiaFNSTIALLFFSVLFEVIVIGGYYAAYRFIYG 215
Cdd:pfam20214  75 FGLLTLFYTITVFtlarklmgfgsNFVNSISSAFGQSSSSNMSNPVG--LSAFLIILVTFALYLFSLIFSGFVARRFVYQ 152

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 797152321  216 HGKNLL--EFVNSGvHCSNLNLILSVLTFIIMLLGSnngsmAALLFLLIIANFFMGFQVTTLGenLKPVRDK 285
Cdd:pfam20214 153 DTSFTFmkSFAWYG-RLFSLNIPLSALIFLFVLIGS-----FQLAFFLLAVSVLLFGLATTFA--LAPSGNV 216
zinc_ribbon_2 pfam13240
zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as ...
 3-23 1.23e-05

zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR. pfam12773.


Pssm-ID: 433054 [Multi-domain]  Cd Length: 21  Bit Score: 41.34  E-value: 1.23e-05
                          10        20
                  ....*....|....*....|.
gi 797152321    3 KCPNCGALMEADVNFCTKCGT 23
Cdd:pfam13240   1 FCPNCGAENPDGAKFCPKCGA 21
DZR pfam12773
Double zinc ribbon; This family consists of a pair of zinc ribbon domains.
 4-28 6.64e-05

Double zinc ribbon; This family consists of a pair of zinc ribbon domains.


Pssm-ID: 432773 [Multi-domain]  Cd Length: 45  Bit Score: 39.67  E-value: 6.64e-05
                          10        20
                  ....*....|....*....|....*
gi 797152321    4 CPNCGALMEADVNFCTKCGTDLRNI 28
Cdd:pfam12773   1 CPNCGHPNPPGAKFCPACGTPLKPD 25
zinc_ribbon_15 pfam17032
zinc-ribbon family; This zinc-ribbon region is found on a set of largely ...
 1-22 9.93e-04

zinc-ribbon family; This zinc-ribbon region is found on a set of largely microsporidia-specific proteins.


Pssm-ID: 465334 [Multi-domain]  Cd Length: 73  Bit Score: 37.27  E-value: 9.93e-04
                          10        20
                  ....*....|....*....|..
gi 797152321    1 MKKCPNCGALMEADVNFCTKCG 22
Cdd:pfam17032  52 VKICPNCGTVVEPDFRYCPRCG 73
DZR pfam12773
Double zinc ribbon; This family consists of a pair of zinc ribbon domains.
 1-22 1.42e-03

Double zinc ribbon; This family consists of a pair of zinc ribbon domains.


Pssm-ID: 432773 [Multi-domain]  Cd Length: 45  Bit Score: 35.81  E-value: 1.42e-03
                          10        20
                  ....*....|....*....|..
gi 797152321    1 MKKCPNCGALMEADVNFCTKCG 22
Cdd:pfam12773  24 PDRCPNCGAPVPPNARFCPYCG 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH