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Conserved domains on  [gi|636419829|gb|KDL96773|]
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coenzyme PQQ synthesis protein D [Klebsiella pneumoniae MGH 79]

Protein Classification

pyrroloquinoline quinone biosynthesis protein PqqD( domain architecture ID 10011743)

pyrroloquinoline quinone biosynthesis protein PqqD is involved in the biosynthesis of pyrroloquinoline quinone (PQQ)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK02079 PRK02079
pyrroloquinoline quinone biosynthesis peptide chaperone PqqD;
2-87 3.13e-44

pyrroloquinoline quinone biosynthesis peptide chaperone PqqD;


:

Pssm-ID: 179362  Cd Length: 88  Bit Score: 137.78  E-value: 3.13e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636419829  2 QKTSIVAFRRGYRLQWEAAQESHVILYPEGMAKLNETAAAILELVDGRRDVAAIIAMLNERFPEAGGVDDDVIEFLKIAC 81
Cdd:PRK02079  1 DRNQVPTLRPGYRFQWEPAQNCHVLLYPEGMIKLNESAGEILGLIDGKRTVAAIIAELQQQFPDVPGLDEDVLEFLEVAR 80


                ....*.
gi 636419829 82 QQKWIT 87
Cdd:PRK02079 81 AKHWIE 86
 
Name Accession Description Interval E-value
PRK02079 PRK02079
pyrroloquinoline quinone biosynthesis peptide chaperone PqqD;
2-87 3.13e-44

pyrroloquinoline quinone biosynthesis peptide chaperone PqqD;


Pssm-ID: 179362  Cd Length: 88  Bit Score: 137.78  E-value: 3.13e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636419829  2 QKTSIVAFRRGYRLQWEAAQESHVILYPEGMAKLNETAAAILELVDGRRDVAAIIAMLNERFPEAGGVDDDVIEFLKIAC 81
Cdd:PRK02079  1 DRNQVPTLRPGYRFQWEPAQNCHVLLYPEGMIKLNESAGEILGLIDGKRTVAAIIAELQQQFPDVPGLDEDVLEFLEVAR 80


                ....*.
gi 636419829 82 QQKWIT 87
Cdd:PRK02079 81 AKHWIE 86
PQQ_PqqD TIGR03859
coenzyme PQQ biosynthesis protein PqqD; This model identifies PqqD, a protein involved in the ...
 8-86 9.68e-37

coenzyme PQQ biosynthesis protein PqqD; This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]


Pssm-ID: 274818  Cd Length: 81  Bit Score: 118.57  E-value: 9.68e-37
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 636419829   8 AFRRGYRLQWEAAQESHVILYPEGMAKLNETAAAILELVDGRRDVAAIIAMLNERFPEAGGVDDDVIEFLKIACQQKWI 86
Cdd:TIGR03859  2 ALRRGYRLQWERAQDCWVLLYPEGMVKLNDSAGEILELCDGKRSLAEIIQELAQRFPAAEEIEDDVIAFLAVARAKHWL 80
PqqD pfam05402
Coenzyme PQQ synthesis protein D (PqqD); This family contains several bacterial coenzyme PQQ ...
 25-86 6.65e-13

Coenzyme PQQ synthesis protein D (PqqD); This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.


Pssm-ID: 461641  Cd Length: 65  Bit Score: 57.87  E-value: 6.65e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 636419829  25 VILYPEG--MAKLNETAAAILELVDGRRDVAAIIAMLNERFP-EAGGVDDDVIEFLKIACQQKWI 86
Cdd:pfam05402  1 VLLDPETgkYISLNETGAFIWELLDGRTTVEEIVAALAEEYDvDEEEAEADVEAFLEQLREAGLI 65
 
Name Accession Description Interval E-value
PRK02079 PRK02079
pyrroloquinoline quinone biosynthesis peptide chaperone PqqD;
2-87 3.13e-44

pyrroloquinoline quinone biosynthesis peptide chaperone PqqD;


Pssm-ID: 179362  Cd Length: 88  Bit Score: 137.78  E-value: 3.13e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636419829  2 QKTSIVAFRRGYRLQWEAAQESHVILYPEGMAKLNETAAAILELVDGRRDVAAIIAMLNERFPEAGGVDDDVIEFLKIAC 81
Cdd:PRK02079  1 DRNQVPTLRPGYRFQWEPAQNCHVLLYPEGMIKLNESAGEILGLIDGKRTVAAIIAELQQQFPDVPGLDEDVLEFLEVAR 80


                ....*.
gi 636419829 82 QQKWIT 87
Cdd:PRK02079 81 AKHWIE 86
PQQ_PqqD TIGR03859
coenzyme PQQ biosynthesis protein PqqD; This model identifies PqqD, a protein involved in the ...
 8-86 9.68e-37

coenzyme PQQ biosynthesis protein PqqD; This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]


Pssm-ID: 274818  Cd Length: 81  Bit Score: 118.57  E-value: 9.68e-37
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 636419829   8 AFRRGYRLQWEAAQESHVILYPEGMAKLNETAAAILELVDGRRDVAAIIAMLNERFPEAGGVDDDVIEFLKIACQQKWI 86
Cdd:TIGR03859  2 ALRRGYRLQWERAQDCWVLLYPEGMVKLNDSAGEILELCDGKRSLAEIIQELAQRFPAAEEIEDDVIAFLAVARAKHWL 80
PqqD pfam05402
Coenzyme PQQ synthesis protein D (PqqD); This family contains several bacterial coenzyme PQQ ...
 25-86 6.65e-13

Coenzyme PQQ synthesis protein D (PqqD); This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.


Pssm-ID: 461641  Cd Length: 65  Bit Score: 57.87  E-value: 6.65e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 636419829  25 VILYPEG--MAKLNETAAAILELVDGRRDVAAIIAMLNERFP-EAGGVDDDVIEFLKIACQQKWI 86
Cdd:pfam05402  1 VLLDPETgkYISLNETGAFIWELLDGRTTVEEIVAALAEEYDvDEEEAEADVEAFLEQLREAGLI 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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