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Conserved domains on  [gi|619496812|gb|KAJ96543|]
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hypothetical protein DF41_05040 [Raoultella planticola]

Protein Classification

SirA-like protein( domain architecture ID 10013705)

SirA-like protein similar to SirA, TusA, and the uncharacterized protein YedF; SirA belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence, TusA interacts with cysteine desulfurase IscS and acts as the first member in a sulfur relay

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK11018 PRK11018
putative sulfurtransferase YedF;
1-77 9.99e-54

putative sulfurtransferase YedF;


:

Pssm-ID: 236822  Cd Length: 78  Bit Score: 160.60  E-value: 9.99e-54
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 619496812  1 MKTIVPDYRLDMVGEPCPYPAVATLEAMPSLKKGEILEVVSDCPQSINNIPQDARNYGYTVLDIQQDGPTIRYLIQK 77
Cdd:PRK11018  2 MKNIVPDYRLDMVGEPCPYPAVATLEALPQLKKGEILEVVSDCPQSINNIPLDARNHGYTVLDIQQDGPTIRYLIQK 78
 
Name Accession Description Interval E-value
PRK11018 PRK11018
putative sulfurtransferase YedF;
1-77 9.99e-54

putative sulfurtransferase YedF;


Pssm-ID: 236822  Cd Length: 78  Bit Score: 160.60  E-value: 9.99e-54
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 619496812  1 MKTIVPDYRLDMVGEPCPYPAVATLEAMPSLKKGEILEVVSDCPQSINNIPQDARNYGYTVLDIQQDGPTIRYLIQK 77
Cdd:PRK11018  2 MKNIVPDYRLDMVGEPCPYPAVATLEALPQLKKGEILEVVSDCPQSINNIPLDARNHGYTVLDIQQDGPTIRYLIQK 78
YedF cd03422
YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and ...
 9-77 1.84e-42

YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.


Pssm-ID: 239514  Cd Length: 69  Bit Score: 132.16  E-value: 1.84e-42
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 619496812  9 RLDMVGEPCPYPAVATLEAMPSLKKGEILEVVSDCPQSINNIPQDARNYGYTVLDIQQDGPTIRYLIQK 77
Cdd:cd03422   1 RLDLRGEPCPYPAIATLEALPSLKPGEILEVISDCPQSINNIPIDARNHGYKVLAIEQSGPTIRYLIQK 69
TusA COG0425
Sulfur carrier protein TusA (tRNA thiolation, molybdenum cofactor biosynthesis) [Translation, ...
 10-77 7.32e-22

Sulfur carrier protein TusA (tRNA thiolation, molybdenum cofactor biosynthesis) [Translation, ribosomal structure and biogenesis, Coenzyme transport and metabolism, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440194  Cd Length: 70  Bit Score: 79.85  E-value: 7.32e-22
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 619496812 10 LDMVGEPCPYPAVATLEAMPSLKKGEILEVVSDCPQSINNIPQDARNYGYTVLDIQQDGPTIRYLIQK 77
Cdd:COG0425   1 LDARGLSCPLPVLKTKKALEELKPGEVLEVLADDPGAVEDIPAWCRETGHELLSVEEEGGVYRILIRK 68
TusA pfam01206
Sulfurtransferase TusA; This family includes the TusA sulfurtransferases.
 9-72 5.57e-17

Sulfurtransferase TusA; This family includes the TusA sulfurtransferases.


Pssm-ID: 426125  Cd Length: 64  Bit Score: 67.60  E-value: 5.57e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 619496812   9 RLDMVGEPCPYPAVATLEAMPSLKKGEILEVVSDCPQSINNIPQDARNYGYTVLDIQQDGPTIR 72
Cdd:pfam01206  1 TLDLRGLACPMPLLKTKKALKKLKPGEVLEVLADDPGAVEDIPRWAKETGHEVLEVEEEDGEYR 64
 
Name Accession Description Interval E-value
PRK11018 PRK11018
putative sulfurtransferase YedF;
1-77 9.99e-54

putative sulfurtransferase YedF;


Pssm-ID: 236822  Cd Length: 78  Bit Score: 160.60  E-value: 9.99e-54
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 619496812  1 MKTIVPDYRLDMVGEPCPYPAVATLEAMPSLKKGEILEVVSDCPQSINNIPQDARNYGYTVLDIQQDGPTIRYLIQK 77
Cdd:PRK11018  2 MKNIVPDYRLDMVGEPCPYPAVATLEALPQLKKGEILEVVSDCPQSINNIPLDARNHGYTVLDIQQDGPTIRYLIQK 78
YedF cd03422
YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and ...
 9-77 1.84e-42

YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.


Pssm-ID: 239514  Cd Length: 69  Bit Score: 132.16  E-value: 1.84e-42
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 619496812  9 RLDMVGEPCPYPAVATLEAMPSLKKGEILEVVSDCPQSINNIPQDARNYGYTVLDIQQDGPTIRYLIQK 77
Cdd:cd03422   1 RLDLRGEPCPYPAIATLEALPSLKPGEILEVISDCPQSINNIPIDARNHGYKVLAIEQSGPTIRYLIQK 69
SirA_YedF_YeeD cd00291
SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and ...
 9-77 2.71e-23

SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.


Pssm-ID: 238180  Cd Length: 69  Bit Score: 83.76  E-value: 2.71e-23
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 619496812  9 RLDMVGEPCPYPAVATLEAMPSLKKGEILEVVSDCPQSINNIPQDARNYGYTVLDIQQDGPTIRYLIQK 77
Cdd:cd00291   1 TLDLRGLPCPLPVLKTKKALEKLKSGEVLEVLLDDPGAVEDIPAWAKETGHEVLEVEEEGGVYRILIRK 69
TusA COG0425
Sulfur carrier protein TusA (tRNA thiolation, molybdenum cofactor biosynthesis) [Translation, ...
 10-77 7.32e-22

Sulfur carrier protein TusA (tRNA thiolation, molybdenum cofactor biosynthesis) [Translation, ribosomal structure and biogenesis, Coenzyme transport and metabolism, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440194  Cd Length: 70  Bit Score: 79.85  E-value: 7.32e-22
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 619496812 10 LDMVGEPCPYPAVATLEAMPSLKKGEILEVVSDCPQSINNIPQDARNYGYTVLDIQQDGPTIRYLIQK 77
Cdd:COG0425   1 LDARGLSCPLPVLKTKKALEELKPGEVLEVLADDPGAVEDIPAWCRETGHELLSVEEEGGVYRILIRK 68
TusA pfam01206
Sulfurtransferase TusA; This family includes the TusA sulfurtransferases.
 9-72 5.57e-17

Sulfurtransferase TusA; This family includes the TusA sulfurtransferases.


Pssm-ID: 426125  Cd Length: 64  Bit Score: 67.60  E-value: 5.57e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 619496812   9 RLDMVGEPCPYPAVATLEAMPSLKKGEILEVVSDCPQSINNIPQDARNYGYTVLDIQQDGPTIR 72
Cdd:pfam01206  1 TLDLRGLACPMPLLKTKKALKKLKPGEVLEVLADDPGAVEDIPRWAKETGHEVLEVEEEDGEYR 64
SirA cd03423
SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators ...
 10-77 7.65e-10

SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.


Pssm-ID: 239515  Cd Length: 69  Bit Score: 49.66  E-value: 7.65e-10
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 619496812 10 LDMVGEPCPYPAVATLEAMPSLKKGEILEVVSDCPQSINNIPQDARNYGYTVLDIQQDGPTIRYLIQK 77
Cdd:cd03423   2 LDTRGLRCPEPVMMLHKKVRKMKPGDTLLVLATDPSTTRDIPKFCTFLGHELLAQETEDEPYRYLIRK 69
PRK00299 PRK00299
sulfurtransferase TusA;
6-77 2.14e-06

sulfurtransferase TusA;


Pssm-ID: 178967  Cd Length: 81  Bit Score: 41.16  E-value: 2.14e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 619496812  6 PDYRLDMVGEPCPYPAVATLEAMPSLKKGEILEVVSDCPQSINNIPQDARNYGYTVLDIQQDGPTIRYLIQK 77
Cdd:PRK00299  8 PDHTLDALGLRCPEPVMMVRKTVRNMQPGETLLIIADDPATTRDIPSFCRFMDHELLAQETEQLPYRYLIRK 79
SirA_RHOD_Pry_redox cd03420
SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown ...
 9-77 9.84e-06

SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.


Pssm-ID: 239512  Cd Length: 69  Bit Score: 39.28  E-value: 9.84e-06
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 619496812  9 RLDMVGEPCPYPAVATLEAMPSLKKGEILEVVSDCPQSINNIPQDARNYGYTVLDIQQDGPTIRYLIQK 77
Cdd:cd03420   1 EVDACGLQCPGPILKLKKEIDKLQDGEQLEVKASDPGFARDAQAWCKSTGNTLISLETEKGKVKAVIEK 69
SirA_like_N cd03421
SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, ...
 10-77 7.90e-05

SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.


Pssm-ID: 239513  Cd Length: 67  Bit Score: 36.80  E-value: 7.90e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 619496812 10 LDMVGEPCPYPAVATLEAMpSLKKGEILEVVSDCPQSINNIPQDARNYGYTVlDIQQDGPTIRYLIQK 77
Cdd:cd03421   2 IDARGLACPQPVIKTKKAL-ELEAGGEIEVLVDNEVAKENVSRFAESRGYEV-SVEEKGGEFEITITK 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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