|
Name |
Accession |
Description |
Interval |
E-value |
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
127-362 |
1.40e-23 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 101.55 E-value: 1.40e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 127 YLYLQNNFITELPvESFRNATGLRWVNLDNNRIRKVDqRVLEKLPSLAFLYMEKNQLEEVPAALPR--NLEQLRLSQNQI 204
Cdd:COG4886 117 SLDLSGNQLTDLP-EELANLTNLKELDLSNNQLTDLP-EPLGNLTNLKSLDLSNNQLTDLPEELGNltNLKELDLSNNQI 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 205 SRIppgvfsklenlllldlqhnklsdgvfkPDTFQGLKNLMQLNLAHNTLRKMPPKVP--SAIHQLYLDSNRIEAIPSgy 282
Cdd:COG4886 195 TDL---------------------------PEPLGNLTNLEELDLSGNQLTDLPEPLAnlTNLETLDLSNNQLTDLPE-- 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 283 FKGFPNLAFIRLNYNLLSDrgLPKnSFNISNLLVLHLSHNRISSVpaisnRLEHLYLNNNSIEKINGTQICPNNLVAFHD 362
Cdd:COG4886 246 LGNLTNLEELDLSNNQLTD--LPP-LANLTNLKTLDLSNNQLTDL-----KLKELELLLGLNSLLLLLLLLNLLELLILL 317
|
|
| PRK15370 |
PRK15370 |
type III secretion system effector E3 ubiquitin transferase SlrP; |
154-374 |
5.31e-14 |
|
type III secretion system effector E3 ubiquitin transferase SlrP;
Pssm-ID: 185268 [Multi-domain] Cd Length: 754 Bit Score: 73.96 E-value: 5.31e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 154 LDNNRIRKVDQRVLEKLPSLaflYMEKNQLEEVPAALPRNLEQLRLSQNQISRIPPGVFSKLENLLLLdlqHNKLSdgvF 233
Cdd:PRK15370 206 LDNNELKSLPENLQGNIKTL---YANSNQLTSIPATLPDTIQEMELSINRITELPERLPSALQSLDLF---HNKIS---C 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 234 KPDTFQglKNLMQLNLAHNTLRKMPPKVPSAIHQLYLDSNRIEAIPSGYfkgFPNLAFIRLNYNLLSD--RGLPknsfni 311
Cdd:PRK15370 277 LPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL---PPGLKTLEAGENALTSlpASLP------ 345
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2251092066 312 SNLLVLHLSHNRISSVP-AISNRLEHLYLNNNSIEKIngtqicPNNLVA--------FHDFSSDLEHVPHLR 374
Cdd:PRK15370 346 PELQVLDVSKNQITVLPeTLPPTITTLDVSRNALTNL------PENLPAalqimqasRNNLVRLPESLPHFR 411
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
124-381 |
1.04e-11 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 64.04 E-value: 1.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 124 RIHYLYLQNNFITELPV-ESFRNATGLRwvnLDNNRIRKVDQrvLEKLPSLAFLYMEKNQLEEVP--AALpRNLEQLRLS 200
Cdd:cd21340 3 RITHLYLNDKNITKIDNlSLCKNLKVLY---LYDNKITKIEN--LEFLTNLTHLYLQNNQIEKIEnlENL-VNLKKLYLG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 201 QNQISRIppgvfsklenlllldlqhnklsdgvfkpdtfQGLKNLMQLNlahntlrkmppkvpsaihQLYLDSNRIEaips 280
Cdd:cd21340 77 GNRISVV-------------------------------EGLENLTNLE------------------ELHIENQRLP---- 103
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 281 gyfKGFPnlafirlnynLLSDrglPKNSFNISN-LLVLHLSHNRISSVPAISN--RLEHLYLNNNSIEKingtqicpnnl 357
Cdd:cd21340 104 ---PGEK----------LTFD---PRSLAALSNsLRVLNISGNNIDSLEPLAPlrNLEQLDASNNQISD----------- 156
|
250 260
....*....|....*....|....
gi 2251092066 358 vaFHDFSSDLEHVPHLRYLRLDGN 381
Cdd:cd21340 157 --LEELLDLLSSWPSLRELDLTGN 178
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
123-183 |
2.22e-09 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 52.91 E-value: 2.22e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2251092066 123 SRIHYLYLQNNFITELPVESFRNATGLRWVNLDNNRIRKVDQRVLEKLPSLAFLYMEKNQL 183
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| LRRNT |
smart00013 |
Leucine rich repeat N-terminal domain; |
93-128 |
3.88e-05 |
|
Leucine rich repeat N-terminal domain;
Pssm-ID: 214470 [Multi-domain] Cd Length: 33 Bit Score: 40.38 E-value: 3.88e-05
10 20 30
....*....|....*....|....*....|....*.
gi 2251092066 93 DCPRECYCPPdfpSALYCDSRNLRKVPVIPSRIHYL 128
Cdd:smart00013 1 ACPAPCNCSG---TAVDCSGRGLTEVPLDLPPDTTL 33
|
|
| LRRNT |
pfam01462 |
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ... |
93-122 |
2.73e-03 |
|
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.
Pssm-ID: 396168 [Multi-domain] Cd Length: 28 Bit Score: 34.91 E-value: 2.73e-03
10 20 30
....*....|....*....|....*....|.
gi 2251092066 93 DCPRECYCPPdfpSALYCDSRNLRKVP-VIP 122
Cdd:pfam01462 1 ACPVPCHCSA---TVVNCSDRGLTAVPrDLP 28
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
127-362 |
1.40e-23 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 101.55 E-value: 1.40e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 127 YLYLQNNFITELPvESFRNATGLRWVNLDNNRIRKVDqRVLEKLPSLAFLYMEKNQLEEVPAALPR--NLEQLRLSQNQI 204
Cdd:COG4886 117 SLDLSGNQLTDLP-EELANLTNLKELDLSNNQLTDLP-EPLGNLTNLKSLDLSNNQLTDLPEELGNltNLKELDLSNNQI 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 205 SRIppgvfsklenlllldlqhnklsdgvfkPDTFQGLKNLMQLNLAHNTLRKMPPKVP--SAIHQLYLDSNRIEAIPSgy 282
Cdd:COG4886 195 TDL---------------------------PEPLGNLTNLEELDLSGNQLTDLPEPLAnlTNLETLDLSNNQLTDLPE-- 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 283 FKGFPNLAFIRLNYNLLSDrgLPKnSFNISNLLVLHLSHNRISSVpaisnRLEHLYLNNNSIEKINGTQICPNNLVAFHD 362
Cdd:COG4886 246 LGNLTNLEELDLSNNQLTD--LPP-LANLTNLKTLDLSNNQLTDL-----KLKELELLLGLNSLLLLLLLLNLLELLILL 317
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
130-384 |
9.78e-23 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 99.24 E-value: 9.78e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 130 LQNNFITELPVESFRNATGLRWVNLDNNRIrkvdqrvLEKLPSLAFLYMEKNQLEEVPAALPR--NLEQLRLSQNQISRI 207
Cdd:COG4886 79 LLLLSLLLLGLTDLGDLTNLTELDLSGNEE-------LSNLTNLESLDLSGNQLTDLPEELANltNLKELDLSNNQLTDL 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 208 PPgvfsklenlllldlqhnklsdgvfkpdTFQGLKNLMQLNLAHNTLRKMPPKVP--SAIHQLYLDSNRIEAIPSGyFKG 285
Cdd:COG4886 152 PE---------------------------PLGNLTNLKSLDLSNNQLTDLPEELGnlTNLKELDLSNNQITDLPEP-LGN 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 286 FPNLAFIRLNYNLLSDrgLPKNSFNISNLLVLHLSHNRISSVPAISN--RLEHLYLNNNSIEKIngtqicpnnlvafhdf 363
Cdd:COG4886 204 LTNLEELDLSGNQLTD--LPEPLANLTNLETLDLSNNQLTDLPELGNltNLEELDLSNNQLTDL---------------- 265
|
250 260
....*....|....*....|.
gi 2251092066 364 sSDLEHVPHLRYLRLDGNYLK 384
Cdd:COG4886 266 -PPLANLTNLKTLDLSNNQLT 285
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
108-383 |
3.32e-15 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 76.90 E-value: 3.32e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 108 LYCDSRNLRKVP-VIPS--RIHYLYLQNNFITELPvESFRNATGLRWVNLDNNRIRKVDQrVLEKLPSLAFLYMEKNQLE 184
Cdd:COG4886 141 LDLSNNQLTDLPePLGNltNLKSLDLSNNQLTDLP-EELGNLTNLKELDLSNNQITDLPE-PLGNLTNLEELDLSGNQLT 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 185 EVPAALPR--NLEQLRLSQNQISRIPpgvfsklenlllldlqhnklsdgvfkpdTFQGLKNLMQLNLAHNTLRKMPPKVP 262
Cdd:COG4886 219 DLPEPLANltNLETLDLSNNQLTDLP----------------------------ELGNLTNLEELDLSNNQLTDLPPLAN 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 263 -SAIHQLYLDSNRIEAIpsgYFKGFPNLAFIRLNYNLLSDRGLPKNSFNISNLLVLHLSHNRISSVPAISNRLEHLYLNN 341
Cdd:COG4886 271 lTNLKTLDLSNNQLTDL---KLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLL 347
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 2251092066 342 NSIEKINGTQICPNNLVAFHDFSSDLEHVPHLRYLRLDGNYL 383
Cdd:COG4886 348 ALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTL 389
|
|
| PRK15370 |
PRK15370 |
type III secretion system effector E3 ubiquitin transferase SlrP; |
154-374 |
5.31e-14 |
|
type III secretion system effector E3 ubiquitin transferase SlrP;
Pssm-ID: 185268 [Multi-domain] Cd Length: 754 Bit Score: 73.96 E-value: 5.31e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 154 LDNNRIRKVDQRVLEKLPSLaflYMEKNQLEEVPAALPRNLEQLRLSQNQISRIPPGVFSKLENLLLLdlqHNKLSdgvF 233
Cdd:PRK15370 206 LDNNELKSLPENLQGNIKTL---YANSNQLTSIPATLPDTIQEMELSINRITELPERLPSALQSLDLF---HNKIS---C 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 234 KPDTFQglKNLMQLNLAHNTLRKMPPKVPSAIHQLYLDSNRIEAIPSGYfkgFPNLAFIRLNYNLLSD--RGLPknsfni 311
Cdd:PRK15370 277 LPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL---PPGLKTLEAGENALTSlpASLP------ 345
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2251092066 312 SNLLVLHLSHNRISSVP-AISNRLEHLYLNNNSIEKIngtqicPNNLVA--------FHDFSSDLEHVPHLR 374
Cdd:PRK15370 346 PELQVLDVSKNQITVLPeTLPPTITTLDVSRNALTNL------PENLPAalqimqasRNNLVRLPESLPHFR 411
|
|
| PRK15370 |
PRK15370 |
type III secretion system effector E3 ubiquitin transferase SlrP; |
108-302 |
6.72e-13 |
|
type III secretion system effector E3 ubiquitin transferase SlrP;
Pssm-ID: 185268 [Multi-domain] Cd Length: 754 Bit Score: 70.50 E-value: 6.72e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 108 LYCDSRNLRKVP-VIPSRIHYLYLQNNFITELP---------VESFRNAT---------GLRWVNLDNNRIRKVDqrvlE 168
Cdd:PRK15370 225 LYANSNQLTSIPaTLPDTIQEMELSINRITELPerlpsalqsLDLFHNKIsclpenlpeELRYLSVYDNSIRTLP----A 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 169 KLPS-LAFLYMEKNQLEEVPAALPRNLEQLRLSQNQISRIPPGVFSKLENLLLLDLQHNKLSDGVfkPDTFQglknlmQL 247
Cdd:PRK15370 301 HLPSgITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLPETL--PPTIT------TL 372
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2251092066 248 NLAHNTLRKMPPKVPSAIHQLYLDSNRI----EAIPSGYFKGfPNLAFIRLNYNLLSDR 302
Cdd:PRK15370 373 DVSRNALTNLPENLPAALQIMQASRNNLvrlpESLPHFRGEG-PQPTRIIVEYNPFSER 430
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
224-384 |
7.32e-13 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 69.58 E-value: 7.32e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 224 QHNKLSDGVFKPDTFQGLKNLMQL-----------------NLAHNTLRKMPPKVPS--AIHQLYLDSNRIEAIPSGyFK 284
Cdd:COG4886 78 SLLLLSLLLLGLTDLGDLTNLTELdlsgneelsnltnleslDLSGNQLTDLPEELANltNLKELDLSNNQLTDLPEP-LG 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 285 GFPNLAFIRLNYNLLSDrgLPKNSFNISNLLVLHLSHNRISSVP-AISN--RLEHLYLNNNSIEkingtqicpnnlvafh 361
Cdd:COG4886 157 NLTNLKSLDLSNNQLTD--LPEELGNLTNLKELDLSNNQITDLPePLGNltNLEELDLSGNQLT---------------- 218
|
170 180
....*....|....*....|...
gi 2251092066 362 DFSSDLEHVPHLRYLRLDGNYLK 384
Cdd:COG4886 219 DLPEPLANLTNLETLDLSNNQLT 241
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
123-357 |
1.43e-12 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 68.81 E-value: 1.43e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 123 SRIHYLYLQNNFITELPvESFRNATGLRWVNLDNNRIRKVDQrVLEKLPSLAFLYMEKNQLEEVP--AALPrNLEQLRLS 200
Cdd:COG4886 182 TNLKELDLSNNQITDLP-EPLGNLTNLEELDLSGNQLTDLPE-PLANLTNLETLDLSNNQLTDLPelGNLT-NLEELDLS 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 201 QNQISRIPPgvFSKLENLLLLDLQHNKLSDGVFKPDTFQGLKNLMQLNLAHNTLRKMPPKVPSAIHQLYLDSNRIEAIPS 280
Cdd:COG4886 259 NNQLTDLPP--LANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVT 336
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2251092066 281 GYFKGFPN-LAFIRLNYNLLSDRGLPKNSFNISNLLVLHLSHNRISSVPAISNRLEHLYLNNNSIEKINGTQICPNNL 357
Cdd:COG4886 337 LTTLALSLsLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAGVLLLTLALLDAVNTE 414
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
124-381 |
1.04e-11 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 64.04 E-value: 1.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 124 RIHYLYLQNNFITELPV-ESFRNATGLRwvnLDNNRIRKVDQrvLEKLPSLAFLYMEKNQLEEVP--AALpRNLEQLRLS 200
Cdd:cd21340 3 RITHLYLNDKNITKIDNlSLCKNLKVLY---LYDNKITKIEN--LEFLTNLTHLYLQNNQIEKIEnlENL-VNLKKLYLG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 201 QNQISRIppgvfsklenlllldlqhnklsdgvfkpdtfQGLKNLMQLNlahntlrkmppkvpsaihQLYLDSNRIEaips 280
Cdd:cd21340 77 GNRISVV-------------------------------EGLENLTNLE------------------ELHIENQRLP---- 103
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 281 gyfKGFPnlafirlnynLLSDrglPKNSFNISN-LLVLHLSHNRISSVPAISN--RLEHLYLNNNSIEKingtqicpnnl 357
Cdd:cd21340 104 ---PGEK----------LTFD---PRSLAALSNsLRVLNISGNNIDSLEPLAPlrNLEQLDASNNQISD----------- 156
|
250 260
....*....|....*....|....
gi 2251092066 358 vaFHDFSSDLEHVPHLRYLRLDGN 381
Cdd:cd21340 157 --LEELLDLLSSWPSLRELDLTGN 178
|
|
| PRK15387 |
PRK15387 |
type III secretion system effector E3 ubiquitin transferase SspH2; |
100-383 |
2.96e-11 |
|
type III secretion system effector E3 ubiquitin transferase SspH2;
Pssm-ID: 185285 [Multi-domain] Cd Length: 788 Bit Score: 65.18 E-value: 2.96e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 100 CPPDFPSALYCDSRNLRKVPVIPSRIHYLYLQNNFITELPVEsfrnATGLRWVNLDNNRIRKvdqrvLEKLPS-LAFLYM 178
Cdd:PRK15387 219 CLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLTH-----LPALPSgLCKLWI 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 179 EKNQLEEVPaALPRNLEQLRLSQNQISRIP--PGVFSKLENLllldlqHNKLSDGVFKPDTFQglknlmQLNLAHNTLRK 256
Cdd:PRK15387 290 FGNQLTSLP-VLPPGLQELSVSDNQLASLPalPSELCKLWAY------NNQLTSLPTLPSGLQ------ELSVSDNQLAS 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 257 MpPKVPSAIHQLYLDSNRIEAIPSgyfkgfpnlafirlnynllsdrgLPknsfniSNLLVLHLSHNRISSVPAISNRLEH 336
Cdd:PRK15387 357 L-PTLPSELYKLWAYNNRLTSLPA-----------------------LP------SGLKELIVSGNRLTSLPVLPSELKE 406
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 2251092066 337 LYLNNNsieKINGTQICPNNLVAFHDFSSDLEHVP----HLR---YLRLDGNYL 383
Cdd:PRK15387 407 LMVSGN---RLTSLPMLPSGLLSLSVYRNQLTRLPesliHLSsetTVNLEGNPL 457
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
131-367 |
3.69e-11 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 64.87 E-value: 3.69e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 131 QNNFITELPvesfRNATGLRWVNL----DNNRIRKVDQRVLEkLPSLAFLYMEKNQ-LEEVPAAL-PRNLEQLRLSQNQI 204
Cdd:PLN00113 413 DNSFSGELP----SEFTKLPLVYFldisNNNLQGRINSRKWD-MPSLQMLSLARNKfFGGLPDSFgSKRLENLDLSRNQF 487
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 205 SRIPPGVFSKLENLLLLDLQHNKLSDGVfkPDTFQGLKNLMQLNLAHNTLRKmppkvpsaihqlyldsnrieAIPSGyFK 284
Cdd:PLN00113 488 SGAVPRKLGSLSELMQLKLSENKLSGEI--PDELSSCKKLVSLDLSHNQLSG--------------------QIPAS-FS 544
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 285 GFPNLAFIRLNYNLLSDRgLPKNSFNISNLLVLHLSHNRI-SSVPAISNRLehlylnnnsieKINGTQICPNNLVAFHDF 363
Cdd:PLN00113 545 EMPVLSQLDLSQNQLSGE-IPKNLGNVESLVQVNISHNHLhGSLPSTGAFL-----------AINASAVAGNIDLCGGDT 612
|
....
gi 2251092066 364 SSDL 367
Cdd:PLN00113 613 TSGL 616
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
123-183 |
2.22e-09 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 52.91 E-value: 2.22e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2251092066 123 SRIHYLYLQNNFITELPVESFRNATGLRWVNLDNNRIRKVDQRVLEKLPSLAFLYMEKNQL 183
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| PRK15370 |
PRK15370 |
type III secretion system effector E3 ubiquitin transferase SlrP; |
101-245 |
6.77e-09 |
|
type III secretion system effector E3 ubiquitin transferase SlrP;
Pssm-ID: 185268 [Multi-domain] Cd Length: 754 Bit Score: 57.78 E-value: 6.77e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 101 PPDFPSAL-YCD--SRNLRKVPV-IPSRIHYLYLQNNFITELP---------VESFRNA---------TGLRWVNLDNNR 158
Cdd:PRK15370 278 PENLPEELrYLSvyDNSIRTLPAhLPSGITHLNVQSNSLTALPetlppglktLEAGENAltslpaslpPELQVLDVSKNQ 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 159 IRKVDQRVLeklPSLAFLYMEKNQLEEVPAALPRNLEQLRLSQNQISRIP---PGVFSKLENLLLLDLQHNKLSDgvfkp 235
Cdd:PRK15370 358 ITVLPETLP---PTITTLDVSRNALTNLPENLPAALQIMQASRNNLVRLPeslPHFRGEGPQPTRIIVEYNPFSE----- 429
|
170
....*....|
gi 2251092066 236 DTFQGLKNLM 245
Cdd:PRK15370 430 RTIQNMQRLM 439
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
123-398 |
6.96e-07 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 51.39 E-value: 6.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 123 SRIHYLYL-QNNFITELPVESFrNATGLRWVNLDNNRIRKVDQRVLEKLPSLAFLYMEKNQLE-EVPAA---LPRnLEQL 197
Cdd:PLN00113 260 KNLQYLFLyQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTgKIPVAltsLPR-LQVL 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 198 RLSQNQISRIPPGVFSKLENLLLLDLQHNKLSDGVfkPDTFQGLKNLMQLNLAHNTLRKMPPKVPSAIHQL---YLDSNR 274
Cdd:PLN00113 338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI--PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLrrvRLQDNS 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 275 IEA-IPSGYFKgFPNLAFIRLNYNLLSDRgLPKNSFNISNLLVLHLSHNRIS-SVPAI--SNRLEHLYLNNNsieKINGT 350
Cdd:PLN00113 416 FSGeLPSEFTK-LPLVYFLDISNNNLQGR-INSRKWDMPSLQMLSLARNKFFgGLPDSfgSKRLENLDLSRN---QFSGA 490
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 2251092066 351 qiCPNNLVAFhdfssdlehvPHLRYLRLDGNYLKPPIPLDLMMCFRLL 398
Cdd:PLN00113 491 --VPRKLGSL----------SELMQLKLSENKLSGEIPDELSSCKKLV 526
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
268-324 |
1.25e-06 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 45.21 E-value: 1.25e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 2251092066 268 LYLDSNRIEAIPSGYFKGFPNLAFIRLNYNLLSdrGLPKNSF-NISNLLVLHLSHNRI 324
Cdd:pfam13855 6 LDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLT--TLSPGAFsGLPSLRYLDLSGNRL 61
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
123-392 |
2.90e-06 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 49.46 E-value: 2.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 123 SRIHYLYL-QNNFITELPVE--SFRNatgLRWVNLDNNRIRKVDQRVLEKLPSLAFLYMEKNQLE-EVPAALP--RNLEQ 196
Cdd:PLN00113 188 TSLEFLTLaSNQLVGQIPRElgQMKS---LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTgPIPSSLGnlKNLQY 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 197 LRLSQNQIS-RIPPGVFsklenlllldlqhnklsdgvfkpdtfqGLKNLMQLNLAHNTLRKmppKVPSAIHQ------LY 269
Cdd:PLN00113 265 LFLYQNKLSgPIPPSIF---------------------------SLQKLISLDLSDNSLSG---EIPELVIQlqnleiLH 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 270 LDSNRIEA-IPSGyFKGFPNLAFIRLNYNLLSDrGLPKNSFNISNLLVLHLSHN----RISSVPAISNRLEHLYLNNNSI 344
Cdd:PLN00113 315 LFSNNFTGkIPVA-LTSLPRLQVLQLWSNKFSG-EIPKNLGKHNNLTVLDLSTNnltgEIPEGLCSSGNLFKLILFSNSL 392
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 2251092066 345 EkingTQICPnnlvafhdfssDLEHVPHLRYLRLDGNYLKPPIPLDLM 392
Cdd:PLN00113 393 E----GEIPK-----------SLGACRSLRRVRLQDNSFSGELPSEFT 425
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
132-391 |
4.10e-06 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 49.08 E-value: 4.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 132 NNFITELPVESFRNATGLRWVNLDNNRIRKVDQRvlEKLPSLAFLYMEKNQLE-EVPAALP--RNLEQLRLSQNQISRIP 208
Cdd:PLN00113 103 NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSgEIPNDIGsfSSLKVLDLGGNVLVGKI 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 209 PGVFSKLENLLLLDLQHNKLSDGVfkPDTFQGLKNLMQLNLAHNTLRKmppKVPSAIHQL----YLD---SNRIEAIPSG 281
Cdd:PLN00113 181 PNSLTNLTSLEFLTLASNQLVGQI--PRELGQMKSLKWIYLGYNNLSG---EIPYEIGGLtslnHLDlvyNNLTGPIPSS 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 282 yFKGFPNLAFIRLNYNLLSDRgLPKNSFNISNLLVLHLSHNRIS-SVPAISNRLEhlylnnnsiekingtqicpnNLVAF 360
Cdd:PLN00113 256 -LGNLKNLQYLFLYQNKLSGP-IPPSIFSLQKLISLDLSDNSLSgEIPELVIQLQ--------------------NLEIL 313
|
250 260 270
....*....|....*....|....*....|....*....
gi 2251092066 361 HDFSSD--------LEHVPHLRYLRLDGNYLKPPIPLDL 391
Cdd:PLN00113 314 HLFSNNftgkipvaLTSLPRLQVLQLWSNKFSGEIPKNL 352
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
312-383 |
8.67e-06 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 42.90 E-value: 8.67e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2251092066 312 SNLLVLHLSHNRISSVPAIS----NRLEHLYLNNNSIEKINGtqicpnnlVAFHDFssdlehvPHLRYLRLDGNYL 383
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAfkglSNLKVLDLSNNLLTTLSP--------GAFSGL-------PSLRYLDLSGNRL 61
|
|
| LRRNT |
smart00013 |
Leucine rich repeat N-terminal domain; |
93-128 |
3.88e-05 |
|
Leucine rich repeat N-terminal domain;
Pssm-ID: 214470 [Multi-domain] Cd Length: 33 Bit Score: 40.38 E-value: 3.88e-05
10 20 30
....*....|....*....|....*....|....*.
gi 2251092066 93 DCPRECYCPPdfpSALYCDSRNLRKVPVIPSRIHYL 128
Cdd:smart00013 1 ACPAPCNCSG---TAVDCSGRGLTEVPLDLPPDTTL 33
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
192-252 |
2.29e-04 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 39.04 E-value: 2.29e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2251092066 192 RNLEQLRLSQNQISRIPPGVFSKLENLLLLDLQHNKLSdgVFKPDTFQGLKNLMQLNLAHN 252
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLT--TLSPGAFSGLPSLRYLDLSGN 59
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
224-275 |
2.33e-04 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 39.04 E-value: 2.33e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 2251092066 224 QHNKLSdgVFKPDTFQGLKNLMQLNLAHNTLRKMPPKV---PSAIHQLYLDSNRI 275
Cdd:pfam13855 9 SNNRLT--SLDDGAFKGLSNLKVLDLSNNLLTTLSPGAfsgLPSLRYLDLSGNRL 61
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
181-329 |
5.69e-04 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 42.14 E-value: 5.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 181 NQLE-EVPAALP--RNLEQLRLSQNQISRIPPGVFSKLENLLLLDLQHNKLSDGVfkPDTFQGLKNLMQLNLAHNTLRKM 257
Cdd:PLN00113 390 NSLEgEIPKSLGacRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI--NSRKWDMPSLQMLSLARNKFFGG 467
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2251092066 258 PPKV--PSAIHQLYLDSNRI-EAIPSGyFKGFPNLAFIRLNYNLLSDRgLPKNSFNISNLLVLHLSHNRIS-SVPA 329
Cdd:PLN00113 468 LPDSfgSKRLENLDLSRNQFsGAVPRK-LGSLSELMQLKLSENKLSGE-IPDELSSCKKLVSLDLSHNQLSgQIPA 541
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
313-349 |
6.21e-04 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 463713 [Multi-domain] Cd Length: 44 Bit Score: 37.22 E-value: 6.21e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 2251092066 313 NLLVLHLSHNRISSVPAISN--RLEHLYL-NNNSIEKING 349
Cdd:pfam12799 2 NLEVLDLSNNQITDIPPLAKlpNLETLDLsGNNKITDLSD 41
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
135-384 |
6.45e-04 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 41.57 E-value: 6.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 135 ITELPVESFRNATGLRWVNLDNNRIRKVDQRVLEKL---PSLAFLYMEKNQLEEVPAAL--------PRNLEQLRLSqnq 203
Cdd:cd00116 69 GLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLlrsSSLQELKLNNNGLGDRGLRLlakglkdlPPALEKLVLG--- 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 204 isrippgvfsklenlllldlqHNKLSDGVFKP--DTFQGLKNLMQLNLAHNTLRkmppkvPSAIHQLYLDsnrieaipsg 281
Cdd:cd00116 146 ---------------------RNRLEGASCEAlaKALRANRDLKELNLANNGIG------DAGIRALAEG---------- 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 282 yFKGFPNLAFIRLNYNLLSDRG-------LPKNSFnisnLLVLHLSHNRISSVPA---------ISNRLEHLYLNNNSIE 345
Cdd:cd00116 189 -LKANCNLEVLDLNNNGLTDEGasalaetLASLKS----LEVLNLGDNNLTDAGAaalasallsPNISLLTLSLSCNDIT 263
|
250 260 270
....*....|....*....|....*....|....*....
gi 2251092066 346 kingtqicpnnLVAFHDFSSDLEHVPHLRYLRLDGNYLK 384
Cdd:cd00116 264 -----------DDGAKDLAEVLAEKESLLELDLRGNKFG 291
|
|
| PLN03210 |
PLN03210 |
Resistant to P. syringae 6; Provisional |
115-314 |
6.55e-04 |
|
Resistant to P. syringae 6; Provisional
Pssm-ID: 215633 [Multi-domain] Cd Length: 1153 Bit Score: 42.17 E-value: 6.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 115 LRKVPVIPSRIHYLYLQNNFITELPvesfrnaTGLRWVNLDN-----NRIRKVDQRV--LEKL-----PSLAFLYMEKNQ 182
Cdd:PLN03210 717 LKSFPDISTNISWLDLDETAIEEFP-------SNLRLENLDElilceMKSEKLWERVqpLTPLmtmlsPSLTRLFLSDIP 789
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 183 -LEEVPAALPR--NLEQLRLSQ-NQISRIPPGVfsklenlllldlqhnklsdgvfkpdtfqGLKNLMQLNLAHNTLRKMP 258
Cdd:PLN03210 790 sLVELPSSIQNlhKLEHLEIENcINLETLPTGI----------------------------NLESLESLDLSGCSRLRTF 841
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2251092066 259 PKVPSAIHQLYLDSNRIEAIPSgYFKGFPNLAFIRLNynllSDRGLPKNSFNISNL 314
Cdd:PLN03210 842 PDISTNISDLNLSRTGIEEVPW-WIEKFSNLSFLDMN----GCNNLQRVSLNISKL 892
|
|
| LRRNT |
pfam01462 |
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ... |
93-122 |
2.73e-03 |
|
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.
Pssm-ID: 396168 [Multi-domain] Cd Length: 28 Bit Score: 34.91 E-value: 2.73e-03
10 20 30
....*....|....*....|....*....|.
gi 2251092066 93 DCPRECYCPPdfpSALYCDSRNLRKVP-VIP 122
Cdd:pfam01462 1 ACPVPCHCSA---TVVNCSDRGLTAVPrDLP 28
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
115-338 |
2.98e-03 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 39.77 E-value: 2.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 115 LRKVPVIPSRIHYLYLQNNFITELPVESFRNA----TGLRWVNLDNNRIRkvDQRVLEKLPSLAF------LYMEKNQLE 184
Cdd:COG5238 200 LAEALTQNTTVTTLWLKRNPIGDEGAEILAEAlkgnKSLTTLDLSNNQIG--DEGVIALAEALKNnttvetLYLSGNQIG 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 185 EVPA-----ALPRN--LEQLRLSQNQISRipPGVFSklenlllldlqhnkLSDGVfkpdtfQGLKNLMQLNLAHNTLRKM 257
Cdd:COG5238 278 AEGAialakALQGNttLTSLDLSVNRIGD--EGAIA--------------LAEGL------QGNKTLHTLNLAYNGIGAQ 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 258 PP-------KVPSAIHQLYLDSNRI-----EAIpSGYFKGFPNLAFIRLNYNLLSDRGLPK--NSFNISNLLVLHLSHNR 323
Cdd:COG5238 336 GAialakalQENTTLHSLDLSDNQIgdegaIAL-AKYLEGNTTLRELNLGKNNIGKQGAEAliDALQTNRLHTLILDGNL 414
|
250
....*....|....*
gi 2251092066 324 ISSvpAISNRLEHLY 338
Cdd:COG5238 415 IGA--EAQQRLEQLL 427
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
140-344 |
3.06e-03 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 39.39 E-value: 3.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 140 VESFRNATGLRWVNLDNNRIR----KVDQRVLEKLPSLAFLYMEKN-----QLEEVPAALPRN--LEQLRLSQNQISRip 208
Cdd:COG5238 173 MAKALQNNSVETVYLGCNQIGdegiEELAEALTQNTTVTTLWLKRNpigdeGAEILAEALKGNksLTTLDLSNNQIGD-- 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2251092066 209 pgvfsklenlllldlqhnklsdgvfkpdtfQGLKNLMQlNLAHNTlrkmppkvpsAIHQLYLDSNRI-----EAIPSGyF 283
Cdd:COG5238 251 ------------------------------EGVIALAE-ALKNNT----------TVETLYLSGNQIgaegaIALAKA-L 288
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2251092066 284 KGFPNLAFIRLNYNLLSDRG---LPKNSFNISNLLVLHLSHNRISSVPAIS--------NRLEHLYLNNNSI 344
Cdd:COG5238 289 QGNTTLTSLDLSVNRIGDEGaiaLAEGLQGNKTLHTLNLAYNGIGAQGAIAlakalqenTTLHSLDLSDNQI 360
|
|
| |
