|
Name |
Accession |
Description |
Interval |
E-value |
| TMF_TATA_bd |
pfam12325 |
TATA element modulatory factor 1 TATA binding; This is the C-terminal conserved coiled coil ... |
761-875 |
1.24e-45 |
|
TATA element modulatory factor 1 TATA binding; This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organization in animal and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family.
Pssm-ID: 432481 [Multi-domain] Cd Length: 115 Bit Score: 159.25 E-value: 1.24e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 761 SVSTVGAGPSVQLVERMSAAVRRLESEKATSKEEMARLISQRDEAREEVVALMREIEEKRAQDQRVEKLEKDLQAMNERY 840
Cdd:pfam12325 1 SVSTSGAGPSVQLVERLSSTIRRLEGELASLKEELARLEAQRDEARQEIVKLMKENEELKELKKELEELEKELKELEQRY 80
|
90 100 110
....*....|....*....|....*....|....*
gi 2128905522 841 ETTLEMLGEKSEQVDELQGDVADLKKIYRDLVSTM 875
Cdd:pfam12325 81 ETTLELLGEKSEEVEELKADVEDLKEMYREQVQQL 115
|
|
| TMF_DNA_bd |
pfam12329 |
TATA element modulatory factor 1 DNA binding; This is the middle region of a family of TATA ... |
291-364 |
9.95e-19 |
|
TATA element modulatory factor 1 DNA binding; This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures.. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organization in animal and plant cells.
Pssm-ID: 372049 [Multi-domain] Cd Length: 74 Bit Score: 81.20 E-value: 9.95e-19
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2128905522 291 NNTDKKLAEKDAQIAALMEEGQKLSKTEMKHMTTIKKLRIKSQETDKEISMLKQRLAKAEKSIGDQTERAKRAE 364
Cdd:pfam12329 1 SSLEKLLKEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKNKELEKEIAELKKKLEKLEKELENLEERLKRAE 74
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
328-866 |
4.89e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.06 E-value: 4.89e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 328 LRIKSQETDKEISMLKQRLAKAEKSIGDQTERAKRAESAERAAQDKLkivSKIEKDLDLIRAEREEAGLTITELRRQLND 407
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAEL---AELEAELEELRLELEELELELEEAQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 408 ALAKAENAEKRVQVGALEAEKKVTASLKEDIENVRLEKKLAEDRLKRD-LQDSRDEASKQQEKAKVVELELRGEISNLET 486
Cdd:COG1196 293 LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEeLEEELEEAEEELEEAEAELAEAEEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 487 KL-----ELLRSRSEEVSSSATGDSQATLLRQVETLQTQYALASENWQGIESTLTSRVAALEKDRDETAKRESDIRRKAR 561
Cdd:COG1196 373 ELaeaeeELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 562 EVNSKARRLEDELESVNDRARTVEQDLSEQKASAQKLQARLAQAETVAQDARAELERERKVWESDLQQRIEEEKAKWR-- 639
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIgv 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 640 --------------LELQPNLLSQDNLLRADSPSTSHR--RHSPDPLGIHNRRPTPRSISTDLPLSPLFDERRPSSSRTR 703
Cdd:COG1196 533 eaayeaaleaalaaALQNIVVEDDEVAAAAIEYLKAAKagRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREAD 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 704 SGRTPEIGIPHRQDSIPSSLSNLNGISASntpsIHTFDHDEAFENTSSPHRTINDMISVSTVGAGPSVQLVERMSAAVRR 783
Cdd:COG1196 613 ARYYVLGDTLLGRTLVAARLEAALRRAVT----LAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERL 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 784 LESEKATSKEEMARLISQRDEAREEVVALMREIEEKRAQDQRVEKLEKDLQAMNERYETTLEMLGEKSE---QVDELQGD 860
Cdd:COG1196 689 AEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPeppDLEELERE 768
|
....*.
gi 2128905522 861 VADLKK 866
Cdd:COG1196 769 LERLER 774
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
325-637 |
1.01e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.40 E-value: 1.01e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 325 IKKLRIKSQETDKEISMLKQRLAKAEKSigdQTERAKRAESAERAAQDKLKIVSKIEKDLDLIRAEREEAGLTITELRRQ 404
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKE---LEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 405 LNDALAKAENAEKRVQ--VGALEAEKKVTASLKEDIENVRLEKKLAE---DRLKRDLQDSRDEASKQQEKAKvvelELRG 479
Cdd:TIGR02168 756 LTELEAEIEELEERLEeaEEELAEAEAEIEELEAQIEQLKEELKALRealDELRAELTLLNEEAANLRERLE----SLER 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 480 EISNLETKLELLRSRSEEVSssatgDSQATLLRQVETLQTQYALASENWQGiestLTSRVAALEKDRDETAKRESDIRRK 559
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELS-----EDIESLAAEIEELEELIEELESELEA----LLNERASLEEALALLRSELEELSEE 902
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2128905522 560 AREVNSKARRLEDELESVNDRARTVEQDLSEQKASAQKLQARLAQAETVAQDARAELERERKVWESDLQQRIEEEKAK 637
Cdd:TIGR02168 903 LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
249-876 |
1.26e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.89 E-value: 1.26e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 249 VRDHREELHSHLERI----------DALQSKLTYLSQQLASSAKTvSSDSEANNTDKKLAEKDAQIAALMEEGQKLSKTE 318
Cdd:COG1196 191 LEDILGELERQLEPLerqaekaeryRELKEELKELEAELLLLKLR-ELEAELEELEAELEELEAELEELEAELAELEAEL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 319 MKHMTTIKKLRIKSQETDKEISMLKQRLAKAEKSIGDQTERAKRAESAERAAQDKLKIVSKIEKDLDLIRAEREEAGLTI 398
Cdd:COG1196 270 EELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEA 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 399 TELRRQLNDALAKAENAEKRVQVGALEAEKKVTASLKE--DIENVRLEKKLAEDRLKRDLQDSRDEASKQQEKAKVVELE 476
Cdd:COG1196 350 EEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEllEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEA 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 477 LRGEISNLETKLELLRSRSEEVSSSATgdSQATLLRQVETLQTQYALASENWQGIESTLTSRVAALEKDRDETAKRESDI 556
Cdd:COG1196 430 LAELEEEEEEEEEALEEAAEEEAELEE--EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFL 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 557 R-RKAREVNSKARRLEDELESVNDRARTVEQDLSEqkASAQKLQARLAQAETVAQDARAELERERKVWESDLQQRIEEEK 635
Cdd:COG1196 508 EgVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEA--ALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRAR 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 636 AKWRLELQPNLLSQDNLLRADSPSTSHRRHSPDPLGIHNRRPTPRSISTDLPLSPLFDERRPSSSRTRSGRTPEIGIPHR 715
Cdd:COG1196 586 AALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGG 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 716 QDSIPSSLSNLNGISASNtpsihtfDHDEAFENTSSPHRTINDMISVSTVGAGPSVQLVERMSAAVRRLESEKATSKEEM 795
Cdd:COG1196 666 SRRELLAALLEAEAELEE-------LAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELL 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 796 ARLISQRDEAREEVVALMREIEEKRAQDQRVEKLEKDLQAM---NER----YETTLEMLGEKSEQVDELQGDVADLKKIY 868
Cdd:COG1196 739 EELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALgpvNLLaieeYEELEERYDFLSEQREDLEEARETLEEAI 818
|
....*...
gi 2128905522 869 RDLVSTMK 876
Cdd:COG1196 819 EEIDRETR 826
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
254-637 |
1.56e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 72.10 E-value: 1.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 254 EELHSHLERIDALQSKLTYLSQQLASSAKTVSSDSEANNTDKKLAEKDAQIAALMEEGQKLSKTEMKHMTTIKK----LR 329
Cdd:PTZ00121 1318 DEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKkadeAK 1397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 330 IKSQETDKEISMLKQRLAKAEKSigdqTERAKRAESAERAAQDKLKIVSKIEKDLDLIRAE---REEAGLTITELRRQLN 406
Cdd:PTZ00121 1398 KKAEEDKKKADELKKAAAAKKKA----DEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEeakKAEEAKKKAEEAKKAD 1473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 407 DALAKAENAEK---------RVQVGALEAEKKVTASLKEDIENVRLEKKLAEDRLKRDLQDSRDEASKQQEKAKVVELEL 477
Cdd:PTZ00121 1474 EAKKKAEEAKKadeakkkaeEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKK 1553
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 478 RGEISNLETKlellrsRSEEVSSSATGDSQATLLRQVETLQTQYALASENWQGIESTLTSRVAALEKDRDETAKRESdiR 557
Cdd:PTZ00121 1554 AEELKKAEEK------KKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEE--L 1625
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 558 RKAREVNSKARRLEDELESVNDRARTVEQDLSEQKASAQKLQARLAQAETVAQDARAELERERKVWESdlQQRIEEEKAK 637
Cdd:PTZ00121 1626 KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA--LKKEAEEAKK 1703
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
295-617 |
1.56e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.08 E-value: 1.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 295 KKLAEKDAQIAALMEEGQKLSKTEMKHMTTIKKLRIKSQETDKEISMLKQRLAKAEKSIGDQTERAKRAESAERAAQDKL 374
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 375 KIVSKiekdldliraEREEAGLTITELRRQLNDALAKAENAEKRVQVgaLEAEKkvtASLKEDIENVRLEKKLAEDRLkR 454
Cdd:TIGR02168 312 ANLER----------QLEELEAQLEELESKLDELAEELAELEEKLEE--LKEEL---ESLEAELEELEAELEELESRL-E 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 455 DLQDSRDEASKQQEKAKVVELELRGEISNLETKLELLRSRSEEVSSSATGDSQATLLRQVETLQTQYALASENWQGIEST 534
Cdd:TIGR02168 376 ELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEE 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 535 LTSRVAALEKDRDETAKRESDIRRKAREVNSKARRLeDELESVNDRARTVEQDLSEQKASAQKL---QARLAQAETVAQD 611
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQALDAAERELAQLQARL-DSLERLQENLEGFSEGVKALLKNQSGLsgiLGVLSELISVDEG 534
|
....*.
gi 2128905522 612 ARAELE 617
Cdd:TIGR02168 535 YEAAIE 540
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
234-637 |
9.40e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.65 E-value: 9.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 234 AVIELSALQKTHEDTVRDHREELHSHLERIDALQSKLTYLSQQLASSAKTVSS-DSEANNTDKKLAEKDAQIAALMEEGQ 312
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERlEEELEELEEALAELEEEEEEEEEALE 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 313 KLSKTEMKHMTTIKKLRIKSQETDKEISMLKQRLAKAEKSIGDQTERAKRAESAERAAQDKLKIVSKIEK---------- 382
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLlaglrglaga 525
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 383 -DLDLIRAEREEAGLTITELRRQLNDALAKAENAEKRVQVGALEAEKKVTASLKEDIENVRLEKKLAEDRLKRDLQDSRD 461
Cdd:COG1196 526 vAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVA 605
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 462 EASKQ-QEKAKVVELELRGEISNLETKLE--LLRSRSEEVSSSATGDSQATLLRQVETLQTQYALASEnwqgiestlTSR 538
Cdd:COG1196 606 SDLREaDARYYVLGDTLLGRTLVAARLEAalRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAA---------LLE 676
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 539 VAALEKDRDETAKRESDIRRKAREVNSKARRLEDELESVNDRARTVEQDLSEQKASAQKLQARLAQAETVAQDARAELER 618
Cdd:COG1196 677 AEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEEL 756
|
410
....*....|....*....
gi 2128905522 619 ERKVWESDLQQRIEEEKAK 637
Cdd:COG1196 757 PEPPDLEELERELERLERE 775
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
280-641 |
1.66e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.00 E-value: 1.66e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 280 SAKTVSSDSEANNTDKKLAEKDAQIAALMEEGQKlsktemkhmtTIKKLRIKSQETDKEISMLKQRLAKAEKSIGDQTER 359
Cdd:TIGR02168 665 SAKTNSSILERRREIEELEEKIEELEEKIAELEK----------ALAELRKELEELEEELEQLRKELEELSRQISALRKD 734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 360 AKRAESAERAAQDKLKIVSKIEKDLD----LIRAEREEAGLTITELRRQLNDALAKAENAEKRVQVG--ALEAEKKVTAS 433
Cdd:TIGR02168 735 LARLEAEVEQLEERIAQLSKELTELEaeieELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALreALDELRAELTL 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 434 LKEDIENVRLEKKLAEDRLkRDLQDSRDEASKQQEKAKVVELELRGEISNLETKLELLRSRSEEVSssatgDSQATLLRQ 513
Cdd:TIGR02168 815 LNEEAANLRERLESLERRI-AATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALL-----NERASLEEA 888
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 514 VETLQTQYALASENWQGIEStltsRVAALEKDRDETAKRESDIRRKAREVNSKARRLEDEL-ESVNDRARTVEQDLSEQK 592
Cdd:TIGR02168 889 LALLRSELEELSEELRELES----KRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLsEEYSLTLEEAEALENKIE 964
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 2128905522 593 ASAQKLQARLAQAET-------VAQDARAELERERKVWESDLQQRIEEEKAKWRLE 641
Cdd:TIGR02168 965 DDEEEARRRLKRLENkikelgpVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLE 1020
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
253-601 |
5.49e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.08 E-value: 5.49e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 253 REELHSHLERIDALQSKLTYLSQQLassaktvssdsEANNTDKKLAEKdaqIAALMEEGQKLSKTEmkHMTTIKKLRIKS 332
Cdd:TIGR02169 176 LEELEEVEENIERLDLIIDEKRQQL-----------ERLRREREKAER---YQALLKEKREYEGYE--LLKEKEALERQK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 333 QETDKEISMLKQRLAKAEKSIgdqTERAKRAESAERA-AQDKLKIVSKIEKDLDLIRAEREEAGLTITELRRQLNDALAK 411
Cdd:TIGR02169 240 EAIERQLASLEEELEKLTEEI---SELEKRLEEIEQLlEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 412 AENAEKRVQVGALEAEKkvtasLKEDIENvrLEKKLAEDRLKRDLQDSRDEASKQQEKAKVVELE--------LRGEISN 483
Cdd:TIGR02169 317 LEDAEERLAKLEAEIDK-----LLAEIEE--LEREIEEERKRRDKLTEEYAELKEELEDLRAELEevdkefaeTRDELKD 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 484 LETKLELLRSR--SEEVSSSATGDSQATLLRQVETLQTQYALASENWQGIESTLTS---RVAALEKDRDETAKRESDIRR 558
Cdd:TIGR02169 390 YREKLEKLKREinELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDkalEIKKQEWKLEQLAADLSKYEQ 469
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 2128905522 559 KAREVNSKARRLEDELESvndrartVEQDLSEQKASAQKLQAR 601
Cdd:TIGR02169 470 ELYDLKEEYDRVEKELSK-------LQRELAEAEAQARASEER 505
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
328-590 |
9.86e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.31 E-value: 9.86e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 328 LRIKSQETDKEISMLKQRLAKAEKsigdqterakRAESAERAAQDKLKIVSKIEKDLDLIRAEREEAGLTITELRRQLND 407
Cdd:TIGR02169 679 LRERLEGLKRELSSLQSELRRIEN----------RLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 408 ALAKAENAEKRVQvgALEAEKkvtASLKEDIENVRLEKKLAEDRLKRD-LQDSRDEASKQQEKAKVVEL---ELRGEISN 483
Cdd:TIGR02169 749 LEQEIENVKSELK--ELEARI---EELEEDLHKLEEALNDLEARLSHSrIPEIQAELSKLEEEVSRIEArlrEIEQKLNR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 484 LETKLELLRSRSE--EVSSSATGDSQATLLRQVETLQTQYA-LASE--NWQGIESTLTSRVAALEKDRDETAKRESDIRR 558
Cdd:TIGR02169 824 LTLEKEYLEKEIQelQEQRIDLKEQIKSIEKEIENLNGKKEeLEEEleELEAALRDLESRLGDLKKERDELEAQLRELER 903
|
250 260 270
....*....|....*....|....*....|..
gi 2128905522 559 KAREVNSKARRLEDELESVNDRARTVEQDLSE 590
Cdd:TIGR02169 904 KIEELEAQIEKKRKRLSELKAKLEALEEELSE 935
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
281-635 |
1.03e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.38 E-value: 1.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 281 AKTVSSDSEANNTDKKLAEKDAQIAALMEEGQKLSKTEMKHMTTIKKLRIKSQETDKEISMLKQRLAKAEKSigDQTERA 360
Cdd:PTZ00121 1062 AKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEA--RKAEDA 1139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 361 KRAESAERAAQDK-LKIVSKIEKDLDLIRAEREEAGLTITELRRqlndalakAENAEKRVQVGALEAEKKVTASLKEDIE 439
Cdd:PTZ00121 1140 RKAEEARKAEDAKrVEIARKAEDARKAEEARKAEDAKKAEAARK--------AEEVRKAEELRKAEDARKAEAARKAEEE 1211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 440 NVRLEKKLAEDRLKRDLQDSRDEASKQQEKAKVVELELRGEISNLETKLELLRSRSEEVSSSATGDSQATLLRQVETLQT 519
Cdd:PTZ00121 1212 RKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKK 1291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 520 QYALASenwqgiestltsrvaALEKDRDETAKRESDIRRKAREVNSKARRLEDELESVNDRARTVEQDLSEQKASAQKLQ 599
Cdd:PTZ00121 1292 ADEAKK---------------AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAA 1356
|
330 340 350
....*....|....*....|....*....|....*.
gi 2128905522 600 ARLAQAETVAQDARAELERERKVWESdLQQRIEEEK 635
Cdd:PTZ00121 1357 DEAEAAEEKAEAAEKKKEEAKKKADA-AKKKAEEKK 1391
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
350-605 |
1.49e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.31 E-value: 1.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 350 EKSIGDQTERAK-------RAESAERAAQDKLKIVSKIEKDLDLIRAEREEAGlTITELRRQLNDALAKAENAEKRVQVG 422
Cdd:COG4913 220 EPDTFEAADALVehfddleRAHEALEDAREQIELLEPIRELAERYAAARERLA-ELEYLRAALRLWFAQRRLELLEAELE 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 423 ALEAEKkvtASLKEDIENVRLEKKLAEDRLkRDLQDSRDEASKQQEKakvvelELRGEISNLETKLELLRSRseevsssa 502
Cdd:COG4913 299 ELRAEL---ARLEAELERLEARLDALREEL-DELEAQIRGNGGDRLE------QLEREIERLERELEERERR-------- 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 503 tgdsQATLLRQVETLQTQYALASENWQGIESTLTSRVAALEKDRDETAKRESDIRRKAREVNSKARRLEDELESVNDRAR 582
Cdd:COG4913 361 ----RARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKS 436
|
250 260
....*....|....*....|...
gi 2128905522 583 TVEQDLseqkasaQKLQARLAQA 605
Cdd:COG4913 437 NIPARL-------LALRDALAEA 452
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
278-635 |
1.73e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 1.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 278 ASSAKTVSSDSEANNTDKKLAE-KDAQIAALMEEGQKLSKTEMKHMTTiKKLRIKSQETDKeismlKQRLAKAEKSigDQ 356
Cdd:PTZ00121 1220 AEDAKKAEAVKKAEEAKKDAEEaKKAEEERNNEEIRKFEEARMAHFAR-RQAAIKAEEARK-----ADELKKAEEK--KK 1291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 357 TERAKRAESAERAaqDKLKIVSKIEKDLDLIRAEREEAGLTITELRRQLNDALAKAENAEKRVQVGALEAEKkvTASLKE 436
Cdd:PTZ00121 1292 ADEAKKAEEKKKA--DEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEA--AEEKAE 1367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 437 DIENVRLEKKLAEDRLKRDLQDSR--DEASKQQEKAKVVELELRgEISNLETKLELLRSRSEEVSSSATGDSQATLLRQV 514
Cdd:PTZ00121 1368 AAEKKKEEAKKKADAAKKKAEEKKkaDEAKKKAEEDKKKADELK-KAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKA 1446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 515 ETLQTQYALASENWQGIESTLTSRVAALEKDRDETAKRESDIRRKAREVNSKARRLE---------DELESVNDRARTVE 585
Cdd:PTZ00121 1447 DEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKkaaeakkkaDEAKKAEEAKKADE 1526
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 2128905522 586 QDLSEQKASAQklQARLAQAETVAQDARA--ELERERKVWESDLQQRIEEEK 635
Cdd:PTZ00121 1527 AKKAEEAKKAD--EAKKAEEKKKADELKKaeELKKAEEKKKAEEAKKAEEDK 1576
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
288-642 |
3.25e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.30 E-value: 3.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 288 SEANNTDKKLAEKDAQIAALMEEGQKLSKTEMKhmttIKKLRIKSQETDKEISMLKQRLAKAEKSigdqteRAKRAESAE 367
Cdd:PRK03918 307 DELREIEKRLSRLEEEINGIEERIKELEEKEER----LEELKKKLKELEKRLEELEERHELYEEA------KAKKEELER 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 368 RAAQDKLKIVSKIEKDLDLIRAEREEAGLTITELRR----------QLNDALAKAENAEKRVQV-GAL---EAEKKVTAS 433
Cdd:PRK03918 377 LKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITArigelkkeikELKKAIEELKKAKGKCPVcGRElteEHRKELLEE 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 434 LKEDIENVRLEKKLAEDRLKRDLQDSRD-EASKQQEKAKVVELELRGEISNLETKLELLRSRSEEVSSSatgdSQATLLR 512
Cdd:PRK03918 457 YTAELKRIEKELKEIEEKERKLRKELRElEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAE----EYEKLKE 532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 513 QVETLQTQYALASENWQGIEStLTSRVAALEKDRDETAKRESDIRRKAR--------EVNSKARRLED------ELESVN 578
Cdd:PRK03918 533 KLIKLKGEIKSLKKELEKLEE-LKKKLAELEKKLDELEEELAELLKELEelgfesveELEERLKELEPfyneylELKDAE 611
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2128905522 579 DRARTVEQDLSEQKASAQKLQARLAQAETVAQDARAELERERKVWESDLQQRIEEEKAKWRLEL 642
Cdd:PRK03918 612 KELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSREL 675
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
278-643 |
3.73e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.38 E-value: 3.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 278 ASSAKTVSSDSEANNTDKKLAE---KDAQIAALMEEGQKLSKTEMKhmttIKKLRIKSQETDK--EISMLKQRLAKAEKS 352
Cdd:PTZ00121 1413 AAAAKKKADEAKKKAEEKKKADeakKKAEEAKKADEAKKKAEEAKK----AEEAKKKAEEAKKadEAKKKAEEAKKADEA 1488
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 353 IGDQTERAKRAESAERAAQDKLKI--VSKIEKDLDLIRAEREEAGLTITELRR----QLNDALAKAENAEKRVQVGALEA 426
Cdd:PTZ00121 1489 KKKAEEAKKKADEAKKAAEAKKKAdeAKKAEEAKKADEAKKAEEAKKADEAKKaeekKKADELKKAEELKKAEEKKKAEE 1568
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 427 EKKVTASLKEDIENVRLEKKLAEDRLKRDLQDSRDEASKQQEKAKVVElELRGEISNLETKLELLRSRSEEVSSSATGDS 506
Cdd:PTZ00121 1569 AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAE-EAKIKAEELKKAEEEKKKVEQLKKKEAEEKK 1647
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 507 QATLLRQVETLQTQYAL-----------ASENWQGIESTLTSRVAALEKDRDEtAKRESDIRRKAREVNSKARRLEDELE 575
Cdd:PTZ00121 1648 KAEELKKAEEENKIKAAeeakkaeedkkKAEEAKKAEEDEKKAAEALKKEAEE-AKKAEELKKKEAEEKKKAEELKKAEE 1726
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2128905522 576 SVNDRARTVEQDLSEQKASAQKLQARLAQAETVAQDARAE---LERERKVWESDLQQRIEEEKAKWRLELQ 643
Cdd:PTZ00121 1727 ENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEekkAEEIRKEKEAVIEEELDEEDEKRRMEVD 1797
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
342-626 |
4.55e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 54.07 E-value: 4.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 342 LKQRLAKAEKSIGDQTERAKRAESAERAAQDKLKivsKIEKDLDLIRAEREEAGLTITEL---RRQLNDALAKAENAEKR 418
Cdd:pfam12128 602 LRERLDKAEEALQSAREKQAAAEEQLVQANGELE---KASREETFARTALKNARLDLRRLfdeKQSEKDKKNKALAERKD 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 419 V---QVGALEAEKKVtaslkedienVRLEKKLAEDRLKRDLQDSRDEaskQQEKAKVVELELRGEISNLETKLELLrsrs 495
Cdd:pfam12128 679 SaneRLNSLEAQLKQ----------LDKKHQAWLEEQKEQKREARTE---KQAYWQVVEGALDAQLALLKAAIAAR---- 741
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 496 eevsssatgdsQATLLRQVETLQTQYA--LASENWQGIE-STLTSRVAALEKDRDETAKRESDIRR-------------- 558
Cdd:pfam12128 742 -----------RSGAKAELKALETWYKrdLASLGVDPDViAKLKREIRTLERKIERIAVRRQEVLRyfdwyqetwlqrrp 810
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2128905522 559 ----KAREVNSKARRLEDELESVNDRARTVEQDLSEQKASAQKLQARLAQAETVAQDARAELERERKVWESD 626
Cdd:pfam12128 811 rlatQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATLKEDANSE 882
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
237-639 |
7.14e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.85 E-value: 7.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 237 ELSALQKTHED--TVRDHREELHSHLERIDALQSKLTYLSQQLASSAKTVSSDSEANNTDKKLAEKDAQIAALMEegqkl 314
Cdd:COG4717 79 ELKEAEEKEEEyaELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEE----- 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 315 sktemkHMTTIKKLRIKSQETDKEISMLKQRLAKAEKSIGDQTEraKRAESAERAAQDKLKIVSKIEKDLDLIRAEREEA 394
Cdd:COG4717 154 ------RLEELRELEEELEELEAELAELQEELEELLEQLSLATE--EELQDLAEELEELQQRLAELEEELEEAQEELEEL 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 395 GLTITELRRQLNDALAKAENAEKRVQVGALEAEKKVTASLKEDIENVRLEKKLA-------------EDRLKRDLQDSRD 461
Cdd:COG4717 226 EEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLflvlgllallfllLAREKASLGKEAE 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 462 EASKQQEKAKVVELELRGEISNLETKLELLRSRSEEVSSSAtgDSQATLLRQVETLQTQYALASENwQGIESTLTSRVAA 541
Cdd:COG4717 306 ELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRI--EELQELLREAEELEEELQLEELE-QEIAALLAEAGVE 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 542 LEKDRDETAKRESDIRRKAREVNSKARRLEDELESVNDRARTV-EQDLSEQKASAQKLQARLAQAETVAQDARAELERER 620
Cdd:COG4717 383 DEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALdEEELEEELEELEEELEELEEELEELREELAELEAEL 462
|
410 420
....*....|....*....|....
gi 2128905522 621 KVWESD-----LQQRIEEEKAKWR 639
Cdd:COG4717 463 EQLEEDgelaeLLQELEELKAELR 486
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
250-637 |
8.51e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.73 E-value: 8.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 250 RDHREELHSHLERIDALQSKLT-------YLSQQLASSAKTVSS-DSEANNTDKKLAEKDAQIAALMEEGQKLSKTEMKH 321
Cdd:PRK02224 247 EERREELETLEAEIEDLRETIAeterereELAEEVRDLRERLEElEEERDDLLAEAGLDDADAEAVEARREELEDRDEEL 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 322 MTTIKKLRIKSQETDKEISMLKQRLAKAEKSIGDQTERAKRAESAERAAQDKlkiVSKIEKDLDLIRAEreeagltITEL 401
Cdd:PRK02224 327 RDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREA---VEDRREEIEELEEE-------IEEL 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 402 RRQLNDALAKAENAEKRVQV------GALEAEKKVTASLKEDIENVRLEKKLAED----RLKRDLQDSRDEASKQQEKAK 471
Cdd:PRK02224 397 RERFGDAPVDLGNAEDFLEElreerdELREREAELEATLRTARERVEEAEALLEAgkcpECGQPVEGSPHVETIEEDRER 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 472 VVELE-----LRGEISNLETKLEllrsrseevsssaTGDSQATLLRQVETLQTQYALASENWQGIESTLTSRVAALEKDR 546
Cdd:PRK02224 477 VEELEaeledLEEEVEEVEERLE-------------RAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELR 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 547 DETAKRESDirrkAREVNSKARRLEDELESVNDRARTVEQDLSEQKASAQKLqARLAQAETVAQDARAELERERKVWEsD 626
Cdd:PRK02224 544 ERAAELEAE----AEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESL-ERIRTLLAAIADAEDEIERLREKRE-A 617
|
410
....*....|.
gi 2128905522 627 LQQRIEEEKAK 637
Cdd:PRK02224 618 LAELNDERRER 628
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
237-866 |
2.03e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.60 E-value: 2.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 237 ELSALQKTHEDTVRDHREELHSHLERIDALQSKLTYLSQQLASSAKTV---SSDSEANNTDKKLAEKDAQIAALMEEGQK 313
Cdd:TIGR02168 369 ELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRerlQQEIEELLKKLEEAELKELQAELEELEEE 448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 314 LSKTEMKHMTTIKKLRIKSQETDKeismLKQRLAKAEKSIGDQTERAKRAESAERAAQDKLKIVSKIEKDLDLIRAEREE 393
Cdd:TIGR02168 449 LEELQEELERLEEALEELREELEE----AEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGV 524
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 394 AGLTIT---ELRRQLNDALAKAENAekrVQVGALEAEKKVTASLKEdiENVRLEKKLAEDRLK-RDLQDSRDEASKQQEK 469
Cdd:TIGR02168 525 LSELISvdeGYEAAIEAALGGRLQA---VVVENLNAAKKAIAFLKQ--NELGRVTFLPLDSIKgTEIQGNDREILKNIEG 599
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 470 AKVVELELRGEISNLETKLELLRSRSEEVSSSATGDSQATLLRQVETLQTQ--------YALASENWQGIESTL--TSRV 539
Cdd:TIGR02168 600 FLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLdgdlvrpgGVITGGSAKTNSSILerRREI 679
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 540 AALEKDRDETAKRESDIRRKAREVNSKARRLEDELESVNDRARTVEQDLSEQKASAQKLQARLAQAETVAQDARAELERE 619
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 620 RKVWESDLQQRIEEEKAKWRLELQPNLLSQDNLLRADSPSTSHRRHSpdplgihnrrptprsiSTDLPLSPLFDERRPSS 699
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALD----------------ELRAELTLLNEEAANLR 823
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 700 SRTRSGRTPEIGIPHRQDSIPSSLSNLNGISASNTPSIhtfdhdeafENTSSPHRTINDMISVSTvgagpsvQLVERMSA 779
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI---------EELEELIEELESELEALL-------NERASLEE 887
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 780 AVRRLESEKATSKEEMARLISQRDEAREEVVALMREIEEKRAQDQRVE-KLEKDLQAMNERYETTLEMLGEKSEQVD--- 855
Cdd:TIGR02168 888 ALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEvRIDNLQERLSEEYSLTLEEAEALENKIEdde 967
|
650
....*....|..
gi 2128905522 856 -ELQGDVADLKK 866
Cdd:TIGR02168 968 eEARRRLKRLEN 979
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
358-637 |
4.20e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 4.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 358 ERAKRAESAERA--AQDKLKIVSKIEKDLDLIRAEREEAGLTITELRRQlndALAKAENAEKRVQVGALEAEKKVTASLK 435
Cdd:PTZ00121 1221 EDAKKAEAVKKAeeAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQ---AAIKAEEARKADELKKAEEKKKADEAKK 1297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 436 -EDIENVRLEKKLAEDRLKRD-LQDSRDEASKQQE--KAKVVELELRGEISNLETKlellrsRSEEVSSSATGDSQATLL 511
Cdd:PTZ00121 1298 aEEKKKADEAKKKAEEAKKADeAKKKAEEAKKKADaaKKKAEEAKKAAEAAKAEAE------AAADEAEAAEEKAEAAEK 1371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 512 RQVETLQTQYALASENWQGIESTLTSRVAALEKDRDETAKRESDIRRKAREVNSKA--RRLEDELESVNDRARTVEQ--D 587
Cdd:PTZ00121 1372 KKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAeeKKKADEAKKKAEEAKKADEakK 1451
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 2128905522 588 LSEQKASAQKLQARlAQAETVAQDARAELERERKVWEsdLQQRIEEEKAK 637
Cdd:PTZ00121 1452 KAEEAKKAEEAKKK-AEEAKKADEAKKKAEEAKKADE--AKKKAEEAKKK 1498
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
243-607 |
5.60e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.02 E-value: 5.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 243 KTHEDTVRDHREELHSHLERIDALQSKLTYLSQQLAS-SAKTVSSDSEANNTDKKLAEKDAQIaalmeegqKLSKTEM-K 320
Cdd:TIGR04523 50 KNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDlNDKLKKNKDKINKLNSDLSKINSEI--------KNDKEQKnK 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 321 HMTTIKKLRIKSQETDKEISMLKQRLAKAEKSIGDQTERAKRAESAERAAQDKLKIV----SKIEKDLDLIRAER--EEA 394
Cdd:TIGR04523 122 LEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLekekLNIQKNIDKIKNKLlkLEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 395 GLTITELRRQLNDALAKAENAEKRvQVGALEAEKKvtaSLKEDIENVRLEKKLAEDRLKrDLQDSRDEASKQ-QEKAKVV 473
Cdd:TIGR04523 202 LLSNLKKKIQKNKSLESQISELKK-QNNQLKDNIE---KKQQEINEKTTEISNTQTQLN-QLKDEQNKIKKQlSEKQKEL 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 474 E------LELRGEISNLETKLELLRSRSEEVSSSATGDSQATLLRQVETLQTQYalaSENWQGIeSTLTSRVAALEKDRD 547
Cdd:TIGR04523 277 EqnnkkiKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQI---SQNNKII-SQLNEQISQLKKELT 352
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2128905522 548 ETAKRESDIRRKAREVNSKARRLE-------DELESVNDRARTVEQDLSEQKASAQKLQARLAQAET 607
Cdd:TIGR04523 353 NSESENSEKQRELEEKQNEIEKLKkenqsykQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQ 419
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
370-634 |
6.01e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 6.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 370 AQDKLKIvskIEKDLDLIRAEREEAGLTITELRRQLNDALAKAENAEKRVQVGALEAEkkvTASLKEDIEnvRLEKKLAE 449
Cdd:COG4913 608 NRAKLAA---LEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEID---VASAEREIA--ELEAELER 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 450 -----DRLKRdLQDSRDEASKQQEKAKVVELELRGEISNLETKLEllrsrseevsssatgdsqaTLLRQVETLQTQY-AL 523
Cdd:COG4913 680 ldassDDLAA-LEEQLEELEAELEELEEELDELKGEIGRLEKELE-------------------QAEEELDELQDRLeAA 739
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 524 ASENWQGIESTLTSRVAALEKDRDETAKRE---SDIRRKAREVNSKARRLEDELESVNDRARTVEQDLSEQKASAQKLQA 600
Cdd:COG4913 740 EDLARLELRALLEERFAAALGDAVERELREnleERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLA 819
|
250 260 270
....*....|....*....|....*....|....*....
gi 2128905522 601 RLAQAETVA-QDARAELERERKVWE----SDLQQRIEEE 634
Cdd:COG4913 820 LLDRLEEDGlPEYEERFKELLNENSiefvADLLSKLRRA 858
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
292-641 |
6.86e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.06 E-value: 6.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 292 NTDKKLAEKDAQIAALMEEGQKLSKTEMKHMTTIKKLRIKSQETDK---EISMLKQRLAKAEKSIGDQTERAKRAESAER 368
Cdd:PRK03918 190 NIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEElkeEIEELEKELESLEGSKRKLEEKIRELEERIE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 369 AAQDKLKIVSKIEKDLDLIRaEREEAGLTITELRRQLNDALAKAENAEKRV--QVGALEAEKKVTASLKEDIENVRLEKK 446
Cdd:PRK03918 270 ELKKEIEELEEKVKELKELK-EKAEEYIKLSEFYEEYLDELREIEKRLSRLeeEINGIEERIKELEEKEERLEELKKKLK 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 447 LAEDRLKR---------DLQDSRDEASKQQEKAKVVELE-LRGEISNLET-KLELLRSRSEEVSSSATGDSQATLLRQ-V 514
Cdd:PRK03918 349 ELEKRLEEleerhelyeEAKAKKEELERLKKRLTGLTPEkLEKELEELEKaKEEIEEEISKITARIGELKKEIKELKKaI 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 515 ETLQTQYA--------LASENWQGIESTLTSRVAALEKDRDETAKRESDIRRKAREVNSKARRLED--ELESVNDRARTV 584
Cdd:PRK03918 429 EELKKAKGkcpvcgreLTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESEliKLKELAEQLKEL 508
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 2128905522 585 EQDLSeqKASAQKLQARLAQAETVAQDARaELERERKVWESDLQQRIEEEKAKWRLE 641
Cdd:PRK03918 509 EEKLK--KYNLEELEKKAEEYEKLKEKLI-KLKGEIKSLKKELEKLEELKKKLAELE 562
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
397-637 |
9.80e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 9.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 397 TITELRRQLNDALAKAENAEKRvqvgaLEAEKKVTASLKEDIENvrLEKKLAEdrLKRDLQDSRDEASKQQEKAKVVELE 476
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKE-----LAALKKEEKALLKQLAA--LERRIAA--LARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 477 LRGEISNLETKLELLRSRSEEVSSSATGDSQATLLRQVETLQTQYALasENWQGIESTLTSRVAALEKDRDETAKRESDI 556
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRL--QYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 557 RRKAREVNSKARRLEDELesvndrartveQDLSEQKASAQKLQARLAQAETVAQDARAELERERKVWESDLQQRIEEEKA 636
Cdd:COG4942 170 EAERAELEALLAELEEER-----------AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
.
gi 2128905522 637 K 637
Cdd:COG4942 239 A 239
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
237-865 |
2.78e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 2.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 237 ELSALQKTHEDTVRDHREelhsHLERIDALQSKLTYL-SQQLASSAKTVSSDSEANNTDKKLAEKDAQIAALMEEGQKLS 315
Cdd:TIGR02168 240 ELEELQEELKEAEEELEE----LTAELQELEEKLEELrLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 316 KTEMKHMTTIKKLRIKSQETDKEISMLKQRLAKAEKSIGDQTERAKR-------AESAERAAQDKL----KIVSKIEKDL 384
Cdd:TIGR02168 316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEEleaeleeLESRLEELEEQLetlrSKVAQLELQI 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 385 DLIRAEREEAGLTITELRRQLNDALAKAENAEKRVQVGALEAEKKVTASLKEDIENVRLEKKLAEDRLKRdLQDSRDEAS 464
Cdd:TIGR02168 396 ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEE-LREELEEAE 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 465 KQQEKAKVVELELRGEISNLETKLELLRSRSEEVSSSAtgDSQATLLRQVETLQTQYALASENWQGIESTLTSRVAALEK 544
Cdd:TIGR02168 475 QALDAAERELAQLQARLDSLERLQENLEGFSEGVKALL--KNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVV 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 545 DRDETAKRESDI-------------------------RRKAREVNSKARRLEDELESVNDRARTVEQDL------SEQKA 593
Cdd:TIGR02168 553 ENLNAAKKAIAFlkqnelgrvtflpldsikgteiqgnDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvVDDLD 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 594 SAQKLQARLAQAETVA---------------------------QDARAELERERKVWESDLQQrIEEEKAKWRLELQpNL 646
Cdd:TIGR02168 633 NALELAKKLRPGYRIVtldgdlvrpggvitggsaktnssilerRREIEELEEKIEELEEKIAE-LEKALAELRKELE-EL 710
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 647 LSQDNLLRADSPSTSHR----RHSPDPLGIHNRRPTPRSISTDLPLSPLFDERRPSSSRTRSGRTPEIGIPHRQDSIPSS 722
Cdd:TIGR02168 711 EEELEQLRKELEELSRQisalRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ 790
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 723 LSNLNGISASNtpsihtfdhDEAFENTSSPHRTINDMISVSTVGAGPSVQLVERMSAAVRRLESEKATSKEEMARLISQR 802
Cdd:TIGR02168 791 IEQLKEELKAL---------REALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI 861
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2128905522 803 DEAREEVVALMREIE----EKRAQDQRVEKLEKDLQAMNERYETTLEMLGEKSEQVDELQGDVADLK 865
Cdd:TIGR02168 862 EELEELIEELESELEallnERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLE 928
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
293-621 |
3.69e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 47.48 E-value: 3.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 293 TDKKLAEKDAQIAALMEEGQKLSKTEMKHMTTIKKLRIKSQETDKEISMLKQRLAKAEKSIGDQTERAKRAEsaeRAAQD 372
Cdd:pfam01576 129 TEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEE---KGRQE 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 373 KLKIVSKIEKDLDLIRAEREEAGLTITELRRQ-------LNDALAKAE-------NAEKRVQvgalEAEKKVtASLKEDI 438
Cdd:pfam01576 206 LEKAKRKLEGESTDLQEQIAELQAQIAELRAQlakkeeeLQAALARLEeetaqknNALKKIR----ELEAQI-SELQEDL 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 439 ENVRLEKKLAEDR----------LKRDLQDSRDEASKQQEKAKVVELELrgeiSNLETKLEllrsrseevSSSATGDSQA 508
Cdd:pfam01576 281 ESERAARNKAEKQrrdlgeeleaLKTELEDTLDTTAAQQELRSKREQEV----TELKKALE---------EETRSHEAQL 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 509 TLLRQ-----VETLQTQYALASENWQGIESTltsrVAALEKDRDETAKRESDIRRKAREVNSKARRLEDELESVNDRART 583
Cdd:pfam01576 348 QEMRQkhtqaLEELTEQLEQAKRNKANLEKA----KQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSE 423
|
330 340 350
....*....|....*....|....*....|....*...
gi 2128905522 584 VEQDLSEQKASAQKLQARLAQAETVAQDARAELERERK 621
Cdd:pfam01576 424 SERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSK 461
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
261-470 |
5.28e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 5.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 261 ERIDALQSKLTYLSQQLASSaktvssdseanntDKKLAEKDAQIAALMEEGQKLSKTEMKHMTtikklRIKSQETDKEIS 340
Cdd:COG4913 610 AKLAALEAELAELEEELAEA-------------EERLEALEAELDALQERREALQRLAEYSWD-----EIDVASAEREIA 671
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 341 MLKQRLAKAEKSIGDQTERAKRAESAERAAQDklkivskIEKDLDLIRAEREEAGLTITELRRQLNDALAKAENAEKRVQ 420
Cdd:COG4913 672 ELEAELERLDASSDDLAALEEQLEELEAELEE-------LEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLAR 744
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2128905522 421 VGaleaekkVTASLKEDIENVRLEKklAEDRLKRDLQDSRDEASKQQEKA 470
Cdd:COG4913 745 LE-------LRALLEERFAAALGDA--VERELRENLEERIDALRARLNRA 785
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
238-489 |
7.03e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 7.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 238 LSALQKTHEDTVRDHREELHSHLERIDALQSKLTYLSQQLASSAktvssdseanntdKKLAEKDAQIAALmeeGQKLSKT 317
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALL-------------KQLAALERRIAAL---ARRIRAL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 318 EmkhmTTIKKLRIKSQETDKEISMLKQRLAKAEKSIGDQTERAKRAESAERAA----QDKLKIVSKIEKDLDLIRAEREE 393
Cdd:COG4942 75 E----QELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLAlllsPEDFLDAVRRLQYLKYLAPARRE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 394 AGLTITELRRQLNDALAKAENAEKRVQVGALEAEKKvtaslKEDIENVRLEKKLAEDRLKRDLQDSRDEASKQQEKAKvv 473
Cdd:COG4942 151 QAEELRADLAELAALRAELEAERAELEALLAELEEE-----RAALEALKAERQKLLARLEKELAELAAELAELQQEAE-- 223
|
250
....*....|....*.
gi 2128905522 474 elELRGEISNLETKLE 489
Cdd:COG4942 224 --ELEALIARLEAEAA 237
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
253-419 |
8.79e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 8.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 253 REELHSHLERIDALQSKLTYLSQQLASSAKTVSSDSEANNTD---KKLAEKDAQIAALMEEGQKLSKTEMKhmttIKKLR 329
Cdd:COG4913 623 EEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVAsaeREIAELEAELERLDASSDDLAALEEQ----LEELE 698
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 330 IKSQETDKEISMLKQRLAKAEKSIGDQTERAKRAESAERAAQDKLKIVSKIEKDLDLIRAEREEAGLTITE-LRRQLNDA 408
Cdd:COG4913 699 AELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELREnLEERIDAL 778
|
170
....*....|.
gi 2128905522 409 LAKAENAEKRV 419
Cdd:COG4913 779 RARLNRAEEEL 789
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
333-491 |
9.34e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.92 E-value: 9.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 333 QETDKEISMLKQRLAKAEKSIGDQTERAKRAESAeraaqdklkiVSKIEKDLDLIRAEREEAGLTITELRRQLNDALAKA 412
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAALEAR----------LEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQL 82
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2128905522 413 ENAEKRVQVGALEAEKKVTASLKEDIENVRLEKKLAEDRLKRDLQDSRDEASKQQEKAKVVELELRGEISNLETKLELL 491
Cdd:COG1579 83 GNVRNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEEL 161
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
246-644 |
1.60e-04 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 45.39 E-value: 1.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 246 EDTVRDHREELHSHLERI-DALQSKLTYL--SQQLASSAKTVSSDSEANNTDKKLAEKdaqiaalmEEGQKLSKTEMKHM 322
Cdd:NF033838 53 NESQKEHAKEVESHLEKIlSEIQKSLDKRkhTQNVALNKKLSDIKTEYLYELNVLKEK--------SEAELTSKTKKELD 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 323 TTIKKLRIKSQETDKEISMLKQRLAKAEKSIGDQTERAKRAESAERAAQDKLKIVskiEKDLDLIRAEREEAGLTITELR 402
Cdd:NF033838 125 AAFEQFKKDTLEPGKKVAEATKKVEEAEKKAKDQKEEDRRNYPTNTYKTLELEIA---ESDVEVKKAELELVKEEAKEPR 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 403 RQLNDALAKAENAEKRVQVGALEaekkvtaSLKEDIENVRLEKKLAEDRLKRDLQDSRDEASKQQEKAKVVELELRGEIS 482
Cdd:NF033838 202 DEEKIKQAKAKVESKKAEATRLE-------KIKTDREKAEEEAKRRADAKLKEAVEKNVATSEQDKPKRRAKRGVLGEPA 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 483 NLETKlellrsrseeVSSSATGDSQATllrqvetlqtqyalasenwqgiESTLTSRVAALEKDRDETAKRESDIRRKARE 562
Cdd:NF033838 275 TPDKK----------ENDAKSSDSSVG----------------------EETLPSPSLKPEKKVAEAEKKVEEAKKKAKD 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 563 VNSKARR---------LEDELESVNDRARTVEQDLSEQKASAQKLQARLAQAETVAQDARAELER------ERKVWESDL 627
Cdd:NF033838 323 QKEEDRRnyptntyktLELEIAESDVKVKEAELELVKEEAKEPRNEEKIKQAKAKVESKKAEATRlekiktDRKKAEEEA 402
|
410
....*....|....*...
gi 2128905522 628 QQRI-EEEKAKWRLELQP 644
Cdd:NF033838 403 KRKAaEEDKVKEKPAEQP 420
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
536-664 |
1.68e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 1.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 536 TSRVAALEKDRDETAKRESDIRRKAREVNSKARRLEDELESVNDRARTVEQDLSEQKASAQKLQARLAQAETVAQDARAE 615
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 2128905522 616 LERERKvwesDLQQRIeeeKAKWRLELQPNLLSqdnLLRADSPSTSHRR 664
Cdd:COG4942 99 LEAQKE----ELAELL---RALYRLGRQPPLAL---LLSPEDFLDAVRR 137
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
366-582 |
2.01e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.76 E-value: 2.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 366 AERAAQDKLKIVSKIEKDLDLIRAEREEAGLTITELRRQLNDALAKAENAEKRVQvgaleaekkvtaSLKEDIENVRLEK 445
Cdd:COG1579 1 AMPEDLRALLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELE------------DLEKEIKRLELEI 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 446 KLAEDRLKRDlqdsrdeaSKQQEKAKVV-ELE-LRGEISNLETKLELLRsrseevsssatgDSQATLLRQVETLQTQYAL 523
Cdd:COG1579 69 EEVEARIKKY--------EEQLGNVRNNkEYEaLQKEIESLKRRISDLE------------DEILELMERIEELEEELAE 128
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2128905522 524 ASENWQGIESTLTSRVAALEKDRDETAKRESDIRRKAREVnskARRLEDELESVNDRAR 582
Cdd:COG1579 129 LEAELAELEAELEEKKAELDEELAELEAELEELEAEREEL---AAKIPPELLALYERIR 184
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
298-866 |
2.24e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 2.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 298 AEKDAQIAALMEEGQKLSKTEMKHMTTIKKLR--IKSQETDKEiSMLKQRLAKAEKSIGDQTERAKRAESAERAAQDKLK 375
Cdd:TIGR02169 166 AEFDRKKEKALEELEEVEENIERLDLIIDEKRqqLERLRRERE-KAERYQALLKEKREYEGYELLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 376 IVSKIEKDLDLIRAEREEAGLTITELRRQLNDALAK--AENAEKRVQVgaleaeKKVTASLKEDIENVRLEKKLAEDRLK 453
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKikDLGEEEQLRV------KEKIGELEAEIASLERSIAEKERELE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 454 rdlqdsrdEASKQQEKAKVVELELRGEISNLETKLEllrsrseevsssatgdsqaTLLRQVETLQTQYALASEnwqgIES 533
Cdd:TIGR02169 319 --------DAEERLAKLEAEIDKLLAEIEELEREIE-------------------EERKRRDKLTEEYAELKE----ELE 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 534 TLTSRVAALEKDRDETAKRESDIRRKAREVNSKARRLEDELESVNDRARTVEQDLSEQKASAQKLQARLAQAETVAQDAR 613
Cdd:TIGR02169 368 DLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKA 447
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 614 AELERERKVWESDLQQRIEEEKAKWRLELQPNLLS------QDNLLRADSPSTSHRRHSPDplgihnRRPTPRSISTDLP 687
Cdd:TIGR02169 448 LEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEkelsklQRELAEAEAQARASEERVRG------GRAVEEVLKASIQ 521
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 688 -----LSPL-----------------------FDERRPSSSRTRSGRTPEIG----IP---HRQDSIPSSLSNLNGISAS 732
Cdd:TIGR02169 522 gvhgtVAQLgsvgeryataievaagnrlnnvvVEDDAVAKEAIELLKRRKAGratfLPlnkMRDERRDLSILSEDGVIGF 601
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 733 ntpSIHTFDHDEAFEN----------------TSSPHRTINDMISV-----------------STVGAGPSVQL---VER 776
Cdd:TIGR02169 602 ---AVDLVEFDPKYEPafkyvfgdtlvvedieAARRLMGKYRMVTLegelfeksgamtggsraPRGGILFSRSEpaeLQR 678
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 777 MSAAVRRLESEKATSKEEMARLISQRDEAREEVVALMREIEEKRAqdqRVEKLEKDLQAMNERYETTLEMLGEKSEQVDE 856
Cdd:TIGR02169 679 LRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEK---EIEQLEQEEEKLKERLEELEEDLSSLEQEIEN 755
|
650
....*....|
gi 2128905522 857 LQGDVADLKK 866
Cdd:TIGR02169 756 VKSELKELEA 765
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
436-640 |
3.00e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 3.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 436 EDIENVRLEKKLAEDRLK--RDLQDSRDEASKQQEKAKVVELELRGEISNLETKLELLRsrseevsssatgdsqatLLRQ 513
Cdd:COG4717 71 KELKELEEELKEAEEKEEeyAELQEELEELEEELEELEAELEELREELEKLEKLLQLLP-----------------LYQE 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 514 VETLQTQYALASENWQGIEStltsRVAALEKDRDETAKRESDIRRKAREVNSKARRL----EDELESVNDRARTVEQDLS 589
Cdd:COG4717 134 LEALEAELAELPERLEELEE----RLEELRELEEELEELEAELAELQEELEELLEQLslatEEELQDLAEELEELQQRLA 209
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2128905522 590 EQKASAQKLQARLAQAETVAQDARAELERErkvwesDLQQRIEEEKAKWRL 640
Cdd:COG4717 210 ELEEELEEAQEELEELEEELEQLENELEAA------ALEERLKEARLLLLI 254
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
508-649 |
4.38e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 4.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 508 ATLLRQVETLQTQYALASENWQGIES---TLTSRVAALEK------DRDETAKRESDIRRKAREV------NSKARRLED 572
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAeldALQERREALQRlaeyswDEIDVASAEREIAELEAELerldasSDDLAALEE 692
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2128905522 573 ELESVNDRARTVEQDLSEQKASAQKLQARLAQAETVAQDARAELERERKVWESDLQQRIEEekaKWRLELQPNLLSQ 649
Cdd:COG4913 693 QLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEE---RFAAALGDAVERE 766
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
340-633 |
6.20e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 6.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 340 SMLKQRLAKAEKSIGDQT--------ERAKRAESAERAAQDKLKIVSKIEKDLDLIRAEREEAGLTITELRRQLND---- 407
Cdd:COG4717 45 AMLLERLEKEADELFKPQgrkpelnlKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKlekl 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 408 ----------ALAKAENAEKRVQVGALEAEKKVTASLKEDIENVRLEKKLAEDRLKR--------------DLQDSRDEA 463
Cdd:COG4717 125 lqllplyqelEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEElleqlslateeelqDLAEELEEL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 464 SKQQEKAKVVELELRGEISNLETKLELLRSRSEEVSSSATGDSQATLLRQ---VETLQTQYALASENWQGIESTLTSRVA 540
Cdd:COG4717 205 QQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIaaaLLALLGLGGSLLSLILTIAGVLFLVLG 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 541 ALEKDRDETAKRESDIRRKAREVNSKARRLEDELESVNDRARTVEQDLSEQKASAQKLQARLAQAETVAQDARaELERER 620
Cdd:COG4717 285 LLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAE-ELEEEL 363
|
330
....*....|...
gi 2128905522 621 KVweSDLQQRIEE 633
Cdd:COG4717 364 QL--EELEQEIAA 374
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
337-583 |
6.64e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 6.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 337 KEISMLKQRLAKAEKSIGDQTERAKRAESAERAAQDKLKivsKIEKDLDLIRAEREEAGLTITELRRQLNDALAKAENAE 416
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA---ALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 417 KRvqvgaLEAEKKVTASLkedieNVRLEKKLAEDRLKRDL-QDSRDEASKQQEKAKVVELELRGEISNLETKLELLRsrs 495
Cdd:COG4942 97 AE-----LEAQKEELAEL-----LRALYRLGRQPPLALLLsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELA--- 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 496 eevsssatgDSQATLLRQVETLQTQYALASENWQGIESTLTSR---VAALEKDRDETAKRESDIRRKAREVNSKARRLED 572
Cdd:COG4942 164 ---------ALRAELEAERAELEALLAELEEERAALEALKAERqklLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
250
....*....|.
gi 2128905522 573 ELESVNDRART 583
Cdd:COG4942 235 EAAAAAERTPA 245
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
361-639 |
8.77e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.11 E-value: 8.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 361 KRAESAERAAQDKLK--IVSKIEKD----LDLIRAEREEAGLTITELRRQLNDALAKAENAEKRVQvgALEAEKKVTASL 434
Cdd:PRK02224 179 ERVLSDQRGSLDQLKaqIEEKEEKDlherLNGLESELAELDEEIERYEEQREQARETRDEADEVLE--EHEERREELETL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 435 KEDIENvrLEKKLAEDRLKRDlqDSRDEASKQQEKAkvveLELRGEISNLETKLELlrsrsEEVSSSATGDSQATLLRQV 514
Cdd:PRK02224 257 EAEIED--LRETIAETERERE--ELAEEVRDLRERL----EELEEERDDLLAEAGL-----DDADAEAVEARREELEDRD 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 515 ETLQtqyalasenwqgiESTLTSRVAALEKDRDETAKRES--DIRRKAREVNSKARRLEDELESVNDRARTVEQDLSEQK 592
Cdd:PRK02224 324 EELR-------------DRLEECRVAAQAHNEEAESLREDadDLEERAEELREEAAELESELEEAREAVEDRREEIEELE 390
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 2128905522 593 ASAQKLQARLAQAETV---AQDARAELERERkvweSDLQQRIEEEKAKWR 639
Cdd:PRK02224 391 EEIEELRERFGDAPVDlgnAEDFLEELREER----DELREREAELEATLR 436
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
772-873 |
8.78e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 8.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 772 QLVERMSAAVRRLESEKATSKEEMARLISQRDEAREEVVALMREIEEkrAQDQRVEKLEKDLQAMNERYETTLEMLGEKS 851
Cdd:COG4913 288 RRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRG--NGGDRLEQLEREIERLERELEERERRRARLE 365
|
90 100
....*....|....*....|..
gi 2128905522 852 EQVDELQGDVADLKKIYRDLVS 873
Cdd:COG4913 366 ALLAALGLPLPASAEEFAALRA 387
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
236-614 |
9.69e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.70 E-value: 9.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 236 IELSAL-QKTHEDTVRDHREELHSHLERIDALQSKLTY-------LSQQLASSAKTVS-SDSEANNTDKKLAEKDAQIAA 306
Cdd:TIGR04523 295 SEISDLnNQKEQDWNKELKSELKNQEKKLEEIQNQISQnnkiisqLNEQISQLKKELTnSESENSEKQRELEEKQNEIEK 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 307 LMEEGQKLsKTEMKHMTT----------------------IKKLRIKSQETDKEISMLKQRLAKAEKSIGDQTerakrae 364
Cdd:TIGR04523 375 LKKENQSY-KQEIKNLESqindleskiqnqeklnqqkdeqIKKLQQEKELLEKEIERLKETIIKNNSEIKDLT------- 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 365 saERAAQDKLKIvskieKDLDLIRAEREEaglTITELRRQLNDALAKAENAEKrvqvgalEAEKKVTASLKEDIENVRLE 444
Cdd:TIGR04523 447 --NQDSVKELII-----KNLDNTRESLET---QLKVLSRSINKIKQNLEQKQK-------ELKSKEKELKKLNEEKKELE 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 445 KKLAedrlkrDLQDSRDEASKQQEKAKVVELELRGEISNLETKLELLRSRSEEVSSSATGDSQATLLRQVEtlQTQYALA 524
Cdd:TIGR04523 510 EKVK------DLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELK--QTQKSLK 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 525 SENWQgiestltsrvaaLEKDRDETAKRESDIRRKAREVNSKARRLEDELESVNDRARTVEQDLSEQKASAQKLQARLAQ 604
Cdd:TIGR04523 582 KKQEE------------KQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQ 649
|
410
....*....|
gi 2128905522 605 AETVAQDARA 614
Cdd:TIGR04523 650 IKETIKEIRN 659
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
385-633 |
1.22e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 385 DLIRAEREEAGLTITELRRQLNDALAKAENAEKrvqvgALEAEKKvtaslKEDIENVRLEKKLAEDRLkrdlqdsrDEAS 464
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEA-----ALEEFRQ-----KNGLVDLSEEAKLLLQQL--------SELE 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 465 KQQEKAKVVELELRGEISNLETKLELLRSRSEEVSSSATgdsQATLLRQVETLQTQYALASENWQGiestLTSRVAALEK 544
Cdd:COG3206 226 SQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPV---IQQLRAQLAELEAELAELSARYTP----NHPDVIALRA 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 545 DRDETAkresdirrkaREVNSKARRLEDELESVNDRARTVEQDLSEQKASAQKLQARLAQAETVAQDARAELERERKVWE 624
Cdd:COG3206 299 QIAALR----------AQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYE 368
|
....*....
gi 2128905522 625 SdLQQRIEE 633
Cdd:COG3206 369 S-LLQRLEE 376
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
251-630 |
1.27e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.73 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 251 DHREELHSHLERIDALQSKLTYLSQQLASSAKTvssDSEANNTDKKLAEK--------DAQIAALMEEGQKLSKTEMKHM 322
Cdd:TIGR00606 245 NELDPLKNRLKEIEHNLSKIMKLDNEIKALKSR---KKQMEKDNSELELKmekvfqgtDEQLNDLYHNHQRTVREKEREL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 323 TTIKKlriKSQETDKEISMLKQRLAKAEKSIGDQTERAKR------------AESAERAAQDKLKIVSKIEKDLD----L 386
Cdd:TIGR00606 322 VDCQR---ELEKLNKERRLLNQEKTELLVEQGRLQLQADRhqehirardsliQSLATRLELDGFERGPFSERQIKnfhtL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 387 IRAEREEAGLTITELRRQLNDALAKAENA------EKRVQVGALEAEKKVTASLKEDIENVRLEKKLAEDRLKR------ 454
Cdd:TIGR00606 399 VIERQEDEAKTAAQLCADLQSKERLKQEQadeirdEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRileldq 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 455 DLQDSRDEASKQQEKAkVVELELRGEISNLETKLELLRSRSEEVSSSATGDSQATLLRQVETLQTQYALASENWQGIEST 534
Cdd:TIGR00606 479 ELRKAERELSKAEKNS-LTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSR 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 535 LTSRVAALEKDRDETAKRESDIRRKAREVNskarRLEDELESVNDRARTVEQDLSEQKASAQKLQARLAQAE------TV 608
Cdd:TIGR00606 558 HSDELTSLLGYFPNKKQLEDWLHSKSKEIN----QTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEdklfdvCG 633
|
410 420
....*....|....*....|..
gi 2128905522 609 AQDARAELERERKVWESDLQQR 630
Cdd:TIGR00606 634 SQDEESDLERLKEEIEKSSKQR 655
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
327-649 |
2.47e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.86 E-value: 2.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 327 KLRIKSQETDKEISMLKQRLAKAEKSIGDQTERAKRAESAERAAQDKLKIV-------SKIEK---DLDLIRAEREEAGL 396
Cdd:COG3096 289 ELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDHLNLVqtalrqqEKIERyqeDLEELTERLEEQEE 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 397 TITELRRQLNDALAKAENAEKRVQ--------------------------VGALEAEKKVTASLKEDIENVrlEKKLAED 450
Cdd:COG3096 369 VVEEAAEQLAEAEARLEAAEEEVDslksqladyqqaldvqqtraiqyqqaVQALEKARALCGLPDLTPENA--EDYLAAF 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 451 RLKRDLQDSR-----------DEASKQQEKAKVVELELRGEISNL---ETKLELLrsrseevsssATGDSQATLLRQVET 516
Cdd:COG3096 447 RAKEQQATEEvleleqklsvaDAARRQFEKAYELVCKIAGEVERSqawQTARELL----------RRYRSQQALAQRLQQ 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 517 LQTQYALASEnwqgiestLTSRVAALEKDRDETAKRESDIRRKAREVNSKARRLEDELESVNDRARTVEQDLSEQKASAQ 596
Cdd:COG3096 517 LRAQLAELEQ--------RLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLE 588
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 597 KLQARLAQAET------VAQDARAEL------------------------ERERKVWESDLQQRieeekaKWRLELQPNL 646
Cdd:COG3096 589 QLRARIKELAArapawlAAQDALERLreqsgealadsqevtaamqqllerEREATVERDELAAR------KQALESQIER 662
|
...
gi 2128905522 647 LSQ 649
Cdd:COG3096 663 LSQ 665
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
325-637 |
3.48e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 3.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 325 IKKLRIKSQETDKEISMLKQRLAKAEKSIGDQTERAKRAESAE--RAAQDKLKIVS--KIEKDLDLIRAEREEAGLTITE 400
Cdd:PRK03918 461 LKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEqlKELEEKLKKYNleELEKKAEEYEKLKEKLIKLKGE 540
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 401 LRRqLNDALAKAENAEKRVQvgALEAEKKVTASLKEDIENVRLEK-----KLAEDRLKR---------DLQDSRDEASKQ 466
Cdd:PRK03918 541 IKS-LKKELEKLEELKKKLA--ELEKKLDELEEELAELLKELEELgfesvEELEERLKElepfyneylELKDAEKELERE 617
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 467 QEKAKVVELEL---RGEISNLETKLELLRSRSEEVSSSATGDSQATLLRQVETLQTQYAlasenwqgiesTLTSRVAALE 543
Cdd:PRK03918 618 EKELKKLEEELdkaFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELA-----------GLRAELEELE 686
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 544 KDRDETAKRESDIRRKAREVNSKARRLEDeLESVNDRARTVEQDLSEQKASAqKLQArLAQAETVAQDARAELERERKvw 623
Cdd:PRK03918 687 KRREEIKKTLEKLKEELEEREKAKKELEK-LEKALERVEELREKVKKYKALL-KERA-LSKVGEIASEIFEELTEGKY-- 761
|
330
....*....|....
gi 2128905522 624 eSDLQQRIEEEKAK 637
Cdd:PRK03918 762 -SGVRVKAEENKVK 774
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
237-674 |
3.79e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.11 E-value: 3.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 237 ELSALQKTHEDTVRDHREELHSHLERIDALQSKLTYLSQQLASSAKTVSSdseannTDKKLAEKDAQIAALMEEGQKLSK 316
Cdd:TIGR00618 355 IHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDI------LQREQATIDTRTSAFRDLQGQLAH 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 317 TEMKHMTTIKKLRIKSQETDKEISMLKQR---LAKAEKSIGDQTERAKRAESAERAAQDKLKIVSK-----------IEK 382
Cdd:TIGR00618 429 AKKQQELQQRYAELCAAAITCTAQCEKLEkihLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLArllelqeepcpLCG 508
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 383 DLDLIRAEREEAGLTITELRR--QLNDALAKAENAEKRVQvGALEAEKKVTASLKEDIENVRLE-KKLAE---------D 450
Cdd:TIGR00618 509 SCIHPNPARQDIDNPGPLTRRmqRGEQTYAQLETSEEDVY-HQLTSERKQRASLKEQMQEIQQSfSILTQcdnrskediP 587
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 451 RLKRDLQDSRDEASKQQEKAKVVELELRGEISNLETKLELLrsrseevSSSATGDSQATLLRQVETLQTQYALASENWQG 530
Cdd:TIGR00618 588 NLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQ-------DVRLHLQQCSQELALKLTALHALQLTLTQERV 660
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 531 IESTLTSRVAALEK---DRDETAKRESDIRRKA---REVNSKARRLEDELESVNDRARTVEQDLSEQKASAQKLQARLAQ 604
Cdd:TIGR00618 661 REHALSIRVLPKELlasRQLALQKMQSEKEQLTywkEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDA 740
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 605 AETVAQDARAELERERKVWESDLQQRIEEEKAKWRL-----ELQPNLLSQDNLLRADSPSTS-----HRRHSPDPLGIHN 674
Cdd:TIGR00618 741 LNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTgaelsHLAAEIQFFNRLREEDTHLLKtleaeIGQEIPSDEDILN 820
|
|
| CENP-F_leu_zip |
pfam10473 |
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, ... |
781-871 |
3.98e-03 |
|
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance.
Pssm-ID: 463102 [Multi-domain] Cd Length: 140 Bit Score: 38.43 E-value: 3.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 781 VRRLESEKATSKEEMARLISQRDEAREEVVALMREIEEKRaqdQRVEKLEKDLQAMNERYETTLEMLGEKSEQVDELQGD 860
Cdd:pfam10473 26 VENLERELEMSEENQELAILEAENSKAEVETLKAEIEEMA---QNLRDLELDLVTLRSEKENLTKELQKKQERVSELESL 102
|
90
....*....|.
gi 2128905522 861 VADLKKIYRDL 871
Cdd:pfam10473 103 NSSLENLLEEK 113
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
277-509 |
4.20e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 4.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 277 LASSAKTVSSDSEANNTDKKLAEKDAQIAALMEEGQKLSKTEMKHMTTIKKLRIKSQETDKEISMLKQRLAKAEKSIGDQ 356
Cdd:COG3883 5 ALAAPTPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEER 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 357 TER-AKRAESAERAAQ------------------DKLKIVSKIEKD----LDLIRAEREEAGLTITELRRQLNDALAKAE 413
Cdd:COG3883 85 REElGERARALYRSGGsvsyldvllgsesfsdflDRLSALSKIADAdadlLEELKADKAELEAKKAELEAKLAELEALKA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 414 NAEKRVQvgALEAEKKVTASLKEDIENVRLEKKLAEDRLKRDLQDSRDEASKQQEKAKVVELELRGEISNLETKLELLRS 493
Cdd:COG3883 165 ELEAAKA--ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 242
|
250
....*....|....*.
gi 2128905522 494 RSEEVSSSATGDSQAT 509
Cdd:COG3883 243 AASAAGAGAAGAAGAA 258
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
233-639 |
4.20e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.98 E-value: 4.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 233 TAVIELSALQKTHEDTVRDHREELHSHLERIDALQSKLTYLSQQLASSAKTVSSDSEAnnTDKKLAEKDAQIAALMEEGQ 312
Cdd:pfam12128 255 SAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSA--ADAAVAKDRSELEALEDQHG 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 313 KLSKTEMKhmtTIKKLRIKSQETDKEISMLKQRLAKAEKSIGDQTERAKRAESAerAAQDKLKIVSKIEKDLDLIRAERE 392
Cdd:pfam12128 333 AFLDADIE---TAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSK--IKEQNNRDIAGIKDKLAKIREARD 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 393 EAGLTI--------TELRRQLNDALAKAENAEKRVQVGALEAEKKV-----TASLKEDIEN--VRLEK-----------K 446
Cdd:pfam12128 408 RQLAVAeddlqaleSELREQLEAGKLEFNEEEYRLKSRLGELKLRLnqataTPELLLQLENfdERIERareeqeaanaeV 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 447 LAEDRLKRDLQDSRDEASKQQEKAKVVELELRGEISNLETKL----------------------------ELLRSRSEEV 498
Cdd:pfam12128 488 ERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLfpqagtllhflrkeapdweqsigkvispELLHRTDLDP 567
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 499 SSSATG-----------------------DSQATLLRQVETLQTQYALASENWQGIESTLTSRVAALEK-DRDETAKR-- 552
Cdd:pfam12128 568 EVWDGSvggelnlygvkldlkridvpewaASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKaSREETFARta 647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 553 ----ESDIRRKAREVNSKARRLEDELESVNDRARTVEQDL-SEQKASAQKLQARLAQAETVAQDARAELERERKVWESDL 627
Cdd:pfam12128 648 lknaRLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLeAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGAL 727
|
490
....*....|....*
gi 2128905522 628 Q---QRIEEEKAKWR 639
Cdd:pfam12128 728 DaqlALLKAAIAARR 742
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
237-428 |
4.41e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 4.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 237 ELSALQKTHEDTVRDHREELHSHLERIDALQSKLTYLSQQLASSAKTVSS-DSEANNTDKKLAEKDAQIAALMEEGQKLS 315
Cdd:COG4942 38 ELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAElEKEIAELRAELEAQKEELAELLRALYRLG 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 316 KTE--------------------MKHMTTIKKLRIKS-QETDKEISMLKQRLAKAEKSI-GDQTERAKRAESAERAAQDK 373
Cdd:COG4942 118 RQPplalllspedfldavrrlqyLKYLAPARREQAEElRADLAELAALRAELEAERAELeALLAELEEERAALEALKAER 197
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2128905522 374 LKIVSKIEKDLDLIRAEREEAGLTITELRRQLNDALAKAENAEKRVQVGALEAEK 428
Cdd:COG4942 198 QKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALK 252
|
|
| PRK12472 |
PRK12472 |
hypothetical protein; Provisional |
296-448 |
4.58e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237110 [Multi-domain] Cd Length: 508 Bit Score: 40.62 E-value: 4.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 296 KLAEKDAQIAALMEEGQKLSKTEMKHMTTIKKLRIKSQETDKEISMLKQRLAKAEksigdqteRAKRAESAERAAQDKLK 375
Cdd:PRK12472 177 LFVPKAEALAAAPARAETLAREAEDAARAADEAKTAAAAAAREAAPLKASLRKLE--------RAKARADAELKRADKAL 248
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2128905522 376 IVSKIEKDLDLIRAEREEAGLTITELRRQLNDALAKAEnaEKRVQVGALEAEKKVTASLKEDIENVRLEKKLA 448
Cdd:PRK12472 249 AAAKTDEAKARAEERQQKAAQQAAEAATQLDTAKADAE--AKRAAAAATKEAAKAAAAKKAETAKAATDAKLA 319
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
265-655 |
4.93e-03 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 40.44 E-value: 4.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 265 ALQSKLTYLSQQLASSAKTVSSDSEANntdKKLAEKDAQIAALMEEGQKLSktemkhmTTIKKLRIKSQETDKEISMLKQ 344
Cdd:pfam05622 32 SLQQENKKLQERLDQLESGDDSGTPGG---KKYLLLQKQLEQLQEENFRLE-------TARDDYRIKCEELEKEVLELQH 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 345 RLaKAEKSIGDQTERAKRAESAERAAQDKlkiVSKIEKDLDLIRAEREEAGltitELRRQLNdaLAKAENAEKRVQVGAL 424
Cdd:pfam05622 102 RN-EELTSLAEEAQALKDEMDILRESSDK---VKKLEATVETYKKKLEDLG----DLRRQVK--LLEERNAEYMQRTLQL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 425 EAEKKVTASLKEDIENVR-----LEKKLAEDRLKRD---------------LQDSRDEASKQQEKAKVVELELRgeISNL 484
Cdd:pfam05622 172 EEELKKANALRGQLETYKrqvqeLHGKLSEESKKADklefeykkleekleaLQKEKERLIIERDTLRETNEELR--CAQL 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 485 ETKlELLRSRSEEVSSSATGDSQATLLRQVETLQTQYALASEN---WQGIESTLTSRVAALEKDRDETAKRESDIRRKAR 561
Cdd:pfam05622 250 QQA-ELSQADALLSPSSDPGDNLAAEIMPAEIREKLIRLQHENkmlRLGQEGSYRERLTELQQLLEDANRRKNELETQNR 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 562 EVNSKARRLEDELESVNDRARTVEQDLSEQKASAQKLQARLAQaetvAQDARAELERERKVWEsDLQQRIEEEKAKWRLE 641
Cdd:pfam05622 329 LANQRILELQQQVEELQKALQEQGSKAEDSSLLKQKLEEHLEK----LHEAQSELQKKKEQIE-ELEPKQDSNLAQKIDE 403
|
410
....*....|....
gi 2128905522 642 LQPNLLSQDNLLRA 655
Cdd:pfam05622 404 LQEALRKKDEDMKA 417
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
239-585 |
5.10e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.41 E-value: 5.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 239 SALQKThEDTVRDHREELHSHLERIDALQSKLTYLSQQLASSAKTVSS-DSEANNTDKKLAEKDAQI----------AAL 307
Cdd:PRK02224 370 SELEEA-REAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEElREERDELREREAELEATLrtarerveeaEAL 448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 308 MEEG------QKLSKTEmkHMTTIKKLRIKSQETDKEISMLKQRLAKAEKSIgdqtERAKRAESAERAAQDKLKIVSKIE 381
Cdd:PRK02224 449 LEAGkcpecgQPVEGSP--HVETIEEDRERVEELEAELEDLEEEVEEVEERL----ERAEDLVEAEDRIERLEERREDLE 522
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 382 KDLDLIRAEREEAGLTITELRRQLNDALAKAENAEKRVQVGALEAEKkvTASLKEDIENVRLEKKLAEDRLKR------D 455
Cdd:PRK02224 523 ELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEE--AREEVAELNSKLAELKERIESLERirtllaA 600
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 456 LQDSRDEASKQQEKakvveLELRGEIsNLETKLELLRSRSEEVSSSATGDSQAtllrqVETLQTQYALASENWQGIESTL 535
Cdd:PRK02224 601 IADAEDEIERLREK-----REALAEL-NDERRERLAEKRERKRELEAEFDEAR-----IEEAREDKERAEEYLEQVEEKL 669
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 2128905522 536 TsrvaALEKDRDETAKRESDIRRKAREVNSKARRLE------DELESVNDRARTVE 585
Cdd:PRK02224 670 D----ELREERDDLQAEIGAVENELEELEELRERREalenrvEALEALYDEAEELE 721
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
339-621 |
5.79e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.43 E-value: 5.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 339 ISMLKQRLAKAEKSIGDQTERAKRAESAERAAQDKLKIVSKIEKDLDLIRAEREEAGLTITELRRQlndalaKAENAEKR 418
Cdd:PRK03918 171 IKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEEL------KEEIEELE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 419 VQVGALEAEKKvtaSLKEDIENvrLEKKLAEDRLK-RDLQDSRDEASKQQEKAKVVElELRGEISNLETKLELLRSRSEE 497
Cdd:PRK03918 245 KELESLEGSKR---KLEEKIRE--LEERIEELKKEiEELEEKVKELKELKEKAEEYI-KLSEFYEEYLDELREIEKRLSR 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 498 VSSSATGdsqatLLRQVETLQTQYALASEnWQGIESTLTSRVAALEKD----RDETAKRESDIRRKAREVNSKARRLEDE 573
Cdd:PRK03918 319 LEEEING-----IEERIKELEEKEERLEE-LKKKLKELEKRLEELEERhelyEEAKAKKEELERLKKRLTGLTPEKLEKE 392
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 2128905522 574 LESVNDRARTVEQDLSeqkasaqKLQARLAQAETVAQDARAELERERK 621
Cdd:PRK03918 393 LEELEKAKEEIEEEIS-------KITARIGELKKEIKELKKAIEELKK 433
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
775-871 |
6.24e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.23 E-value: 6.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 775 ERMSAAVRRLESEKATSKEEMARLISQRDEAREEVVALMREIEEKraqDQRVEKLEKDLQAMNERYETTLemlgEKSEQV 854
Cdd:COG2433 395 PEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEK---DERIERLERELSEARSEERREI----RKDREI 467
|
90
....*....|....*..
gi 2128905522 855 DELQGDVADLKKIYRDL 871
Cdd:COG2433 468 SRLDREIERLERELEEE 484
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
234-633 |
8.41e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 39.92 E-value: 8.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 234 AVIELSALQKTHEDTVRDHREELHSHLERIDALQSKLTYLSQQLASSAKTVSSDSEANNTDKKLAEKDAQIAALMEEGQK 313
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 314 lsktEMKHMTTIKKLRIKSQETDKEIS---------------MLKQRLAKAEKSIGDQTERAKRAESAERAAQDKLKIVS 378
Cdd:COG1196 509 ----GVKAALLLAGLRGLAGAVAVLIGveaayeaaleaalaaALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRA 584
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 379 KIEKDLDLIRAEREEAGLTITELRRQLNDALAKAEN--AEKRVQVGALEAEKKVTASLKEDIENVRLEKKLAEDR-LKRD 455
Cdd:COG1196 585 RAALAAALARGAIGAAVDLVASDLREADARYYVLGDtlLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGgSLTG 664
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 456 LQDSRDEASKQQEKAKVVELELRGEISNLETKLELLRSRSEEVSSSATGDSQATLLRQVETLQTQYALASENWQGIESTL 535
Cdd:COG1196 665 GSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEE 744
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 536 TSRVAALEKDRDETAKRESDIRRKAREVnskARRLEdELESVNDRArtveqdLSEQKASAQKLQARLAQaetvaqdaRAE 615
Cdd:COG1196 745 EELLEEEALEELPEPPDLEELERELERL---EREIE-ALGPVNLLA------IEEYEELEERYDFLSEQ--------RED 806
|
410
....*....|....*...
gi 2128905522 616 LERERKvwesDLQQRIEE 633
Cdd:COG1196 807 LEEARE----TLEEAIEE 820
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
297-643 |
9.28e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 39.70 E-value: 9.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 297 LAEKDAQIAALMEEGQKLSKTEMKHMTTiKKLRIKSQETDKEISMlkQRLAKAEKSIGDQTERAKRA---ESAERAAQdk 373
Cdd:pfam05483 262 LLEESRDKANQLEEKTKLQDENLKELIE-KKDHLTKELEDIKMSL--QRSMSTQKALEEDLQIATKTicqLTEEKEAQ-- 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 374 LKIVSKIEKDLDLIRAEREEAGLTITELRRQLNDALAKAENAEK----RVQVGALEAEKKVTASLKEDIENVRLEKKLAE 449
Cdd:pfam05483 337 MEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKiitmELQKKSSELEEMTKFKNNKEVELEELKKILAE 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 450 DRlkrDLQDSRDEASKQQEKAKVVELELRGEISNLETKLELLRSRSEevsssATGDSQATLLRQVETLQTQyaLASENWQ 529
Cdd:pfam05483 417 DE---KLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLT-----AIKTSEEHYLKEVEDLKTE--LEKEKLK 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128905522 530 GIESTLTSRVAALE-------------------KDRDETAKRESDIRRKAREVNSKARRLEDELESVNDrartveqdlsE 590
Cdd:pfam05483 487 NIELTAHCDKLLLEnkeltqeasdmtlelkkhqEDIINCKKQEERMLKQIENLEEKEMNLRDELESVRE----------E 556
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 2128905522 591 QKASAQKLQARLAQAETVAQDARAELERERKVWE------SDLQQRIeEEKAKWRLELQ 643
Cdd:pfam05483 557 FIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKilenkcNNLKKQI-ENKNKNIEELH 614
|
|
| |
