NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|616919124|gb|KAH10170|]
View 

hypothetical protein W800_02196 [Staphylococcus aureus VET1779S]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF600 super family cl04640
Protein of unknown function, DUF600; This conserved region is found in several uncharacterized ...
 1-48 2.08e-19

Protein of unknown function, DUF600; This conserved region is found in several uncharacterized proteins from Gram positive bacteria.


The actual alignment was detected with superfamily member TIGR01741:

Pssm-ID: 414121  Cd Length: 157  Bit Score: 75.32  E-value: 2.08e-19
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 616919124    1 MTFEEKLSEMYNEIANEISGMIPVEWEQVFTIAYVTDQAGEVIFNYTK 48
Cdd:TIGR01741   1 MTFEEKLSDMYQEIANKINDMIPVEWEKVYLYAYVDDESGEVLFNYTT 48
 
Name Accession Description Interval E-value
staph_tand_hypo TIGR01741
conserved hypothetical protein; This model represents a tandem array of 10 proteins in ...
 1-48 2.08e-19

conserved hypothetical protein; This model represents a tandem array of 10 proteins in Staphylococcus aureus and the C-terminal region of one protein each in Bacillus subtilis and Bacillus halodurans.


Pssm-ID: 130802  Cd Length: 157  Bit Score: 75.32  E-value: 2.08e-19
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 616919124    1 MTFEEKLSEMYNEIANEISGMIPVEWEQVFTIAYVTDQAGEVIFNYTK 48
Cdd:TIGR01741   1 MTFEEKLSDMYQEIANKINDMIPVEWEKVYLYAYVDDESGEVLFNYTT 48
DUF600 pfam04634
Protein of unknown function, DUF600; This conserved region is found in several uncharacterized ...
 7-48 3.68e-13

Protein of unknown function, DUF600; This conserved region is found in several uncharacterized proteins from Gram positive bacteria.


Pssm-ID: 398357  Cd Length: 144  Bit Score: 58.82  E-value: 3.68e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 616919124    7 LSEMYNEIANEISGMIPVEWEQVFTIAYVTDQAGEVIFNYTK 48
Cdd:pfam04634   1 LSELYEEIAEKIFDMIPEEWEKVYLYAEVLDGSGEVYFYYYP 42
 
Name Accession Description Interval E-value
staph_tand_hypo TIGR01741
conserved hypothetical protein; This model represents a tandem array of 10 proteins in ...
 1-48 2.08e-19

conserved hypothetical protein; This model represents a tandem array of 10 proteins in Staphylococcus aureus and the C-terminal region of one protein each in Bacillus subtilis and Bacillus halodurans.


Pssm-ID: 130802  Cd Length: 157  Bit Score: 75.32  E-value: 2.08e-19
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 616919124    1 MTFEEKLSEMYNEIANEISGMIPVEWEQVFTIAYVTDQAGEVIFNYTK 48
Cdd:TIGR01741   1 MTFEEKLSDMYQEIANKINDMIPVEWEKVYLYAYVDDESGEVLFNYTT 48
DUF600 pfam04634
Protein of unknown function, DUF600; This conserved region is found in several uncharacterized ...
 7-48 3.68e-13

Protein of unknown function, DUF600; This conserved region is found in several uncharacterized proteins from Gram positive bacteria.


Pssm-ID: 398357  Cd Length: 144  Bit Score: 58.82  E-value: 3.68e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 616919124    7 LSEMYNEIANEISGMIPVEWEQVFTIAYVTDQAGEVIFNYTK 48
Cdd:pfam04634   1 LSELYEEIAEKIFDMIPEEWEKVYLYAEVLDGSGEVYFYYYP 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH