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Conserved domains on  [gi|2043579066|gb|KAG6518068|]
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hypothetical protein ZIOFF_021469 [Zingiber officinale]

Protein Classification

LNG1/LNG2 family protein( domain architecture ID 10627511)

LNG1/LNG2 family protein is a DUF4378 domain-containing protein; similar to Arabidopsis thaliana protein LONGIFOLIA 1 and protein LONGIFOLIA 2, which regulate leaf morphology by promoting longitudinal polar cell elongation independently of ROT3

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4378 pfam14309
Domain of unknown function (DUF4378);
859-1002 1.42e-21

Domain of unknown function (DUF4378);


:

Pssm-ID: 464133  Cd Length: 157  Bit Score: 92.39  E-value: 1.42e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043579066  859 ELHYMRKTLCHKGLTSED--LASYYLNGVAA----FE--GNNGYLQEEVIGDKGRSKLLYDSVQECLELKHD-HYFKAGY 929
Cdd:pfam14309    1 EFSYVRDILLASGLLGKDesLSRWHSPDCPLdpslFDelEEKYGGGEETRESRSERKLLFDLVNEALVEILAsSSYPPGW 80

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2043579066  930 QS----WNKGTILTRKDIAQDVYDEISGWRS-TSNWMVNELVANDMSTHlGSWLEFEIEAFETGKQIQRQILSLLIDE 1002
Cdd:pfam14309   81 VSsassRRRPKVPSGEGLLEEVWSEIRSWLSpESGLMLDELVDKDLSGR-GGWLDLEDEVDEIGLEIERLILDDLVEE 157
VARLMGL pfam14383
DUF761-associated sequence motif; This family is found frequently at the N-terminus of family ...
 206-237 7.71e-16

DUF761-associated sequence motif; This family is found frequently at the N-terminus of family DUF3741, pfam12552.


:

Pssm-ID: 405132  Cd Length: 32  Bit Score: 71.76  E-value: 7.71e-16
                           10        20        30
                   ....*....|....*....|....*....|..
gi 2043579066  206 SSVTDEDGNGTRAPGVVARLMGLDSMPTSGVS 237
Cdd:pfam14383    1 SSVTDEEGNGMRAPGVVARLMGLDSLPSSHRS 32
 
Name Accession Description Interval E-value
DUF4378 pfam14309
Domain of unknown function (DUF4378);
859-1002 1.42e-21

Domain of unknown function (DUF4378);


Pssm-ID: 464133  Cd Length: 157  Bit Score: 92.39  E-value: 1.42e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043579066  859 ELHYMRKTLCHKGLTSED--LASYYLNGVAA----FE--GNNGYLQEEVIGDKGRSKLLYDSVQECLELKHD-HYFKAGY 929
Cdd:pfam14309    1 EFSYVRDILLASGLLGKDesLSRWHSPDCPLdpslFDelEEKYGGGEETRESRSERKLLFDLVNEALVEILAsSSYPPGW 80

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2043579066  930 QS----WNKGTILTRKDIAQDVYDEISGWRS-TSNWMVNELVANDMSTHlGSWLEFEIEAFETGKQIQRQILSLLIDE 1002
Cdd:pfam14309   81 VSsassRRRPKVPSGEGLLEEVWSEIRSWLSpESGLMLDELVDKDLSGR-GGWLDLEDEVDEIGLEIERLILDDLVEE 157
VARLMGL pfam14383
DUF761-associated sequence motif; This family is found frequently at the N-terminus of family ...
 206-237 7.71e-16

DUF761-associated sequence motif; This family is found frequently at the N-terminus of family DUF3741, pfam12552.


Pssm-ID: 405132  Cd Length: 32  Bit Score: 71.76  E-value: 7.71e-16
                           10        20        30
                   ....*....|....*....|....*....|..
gi 2043579066  206 SSVTDEDGNGTRAPGVVARLMGLDSMPTSGVS 237
Cdd:pfam14383    1 SSVTDEEGNGMRAPGVVARLMGLDSLPSSHRS 32
 
Name Accession Description Interval E-value
DUF4378 pfam14309
Domain of unknown function (DUF4378);
859-1002 1.42e-21

Domain of unknown function (DUF4378);


Pssm-ID: 464133  Cd Length: 157  Bit Score: 92.39  E-value: 1.42e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043579066  859 ELHYMRKTLCHKGLTSED--LASYYLNGVAA----FE--GNNGYLQEEVIGDKGRSKLLYDSVQECLELKHD-HYFKAGY 929
Cdd:pfam14309    1 EFSYVRDILLASGLLGKDesLSRWHSPDCPLdpslFDelEEKYGGGEETRESRSERKLLFDLVNEALVEILAsSSYPPGW 80

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2043579066  930 QS----WNKGTILTRKDIAQDVYDEISGWRS-TSNWMVNELVANDMSTHlGSWLEFEIEAFETGKQIQRQILSLLIDE 1002
Cdd:pfam14309   81 VSsassRRRPKVPSGEGLLEEVWSEIRSWLSpESGLMLDELVDKDLSGR-GGWLDLEDEVDEIGLEIERLILDDLVEE 157
VARLMGL pfam14383
DUF761-associated sequence motif; This family is found frequently at the N-terminus of family ...
 206-237 7.71e-16

DUF761-associated sequence motif; This family is found frequently at the N-terminus of family DUF3741, pfam12552.


Pssm-ID: 405132  Cd Length: 32  Bit Score: 71.76  E-value: 7.71e-16
                           10        20        30
                   ....*....|....*....|....*....|..
gi 2043579066  206 SSVTDEDGNGTRAPGVVARLMGLDSMPTSGVS 237
Cdd:pfam14383    1 SSVTDEEGNGMRAPGVVARLMGLDSLPSSHRS 32
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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