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Conserved domains on  [gi|1940753915|gb|KAG0024452|]
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rRNA-processing protein las1 [Entomortierella chlamydospora]

Protein Classification

ribosomal biogenesis LAS1 family protein( domain architecture ID 10513148)

ribosomal biogenesis LAS1 family protein similar to ribosomal biogenesis protein LAS1, which is an essential nuclear protein required for cell proliferation and ribosome biogenesis

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Las1 pfam04031
Las1-like; Las1 is an essential nuclear protein involved in cell morphogenesis and cell ...
9-160 7.45e-68

Las1-like; Las1 is an essential nuclear protein involved in cell morphogenesis and cell surface growth.


:

Pssm-ID: 461138  Cd Length: 148  Bit Score: 217.07  E-value: 7.45e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940753915   9 VPWHSPAEFIQVHQWFYaplteDGTPDIRAQECALRRVKAWEARGKLPHAIDSTASFVGAIVRD--WSQTCSDQDLRLMY 86
Cdd:pfam04031   1 VPWRSWAEWLQVRQWLY-----DDSDDPDARRRALNRVSAWKSRGNLPHAVESTALLLEAILLDeeGSLGGSEYELRLLY 75
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1940753915  87 SMVFIRFVNGYVDGFQTSNSAKSIAYLAvEKVGMPKWFVELRHTATHDYLPSLAILRSAAQQALAWINDNYWIP 160
Cdd:pfam04031  76 SMAIVRFVNGLLDPKQKGQYAISMASLA-KELGLPSWFVELRHEATHEELPSLEVLRRAAKQALDWLWDNYWLP 148
 
Name Accession Description Interval E-value
Las1 pfam04031
Las1-like; Las1 is an essential nuclear protein involved in cell morphogenesis and cell ...
9-160 7.45e-68

Las1-like; Las1 is an essential nuclear protein involved in cell morphogenesis and cell surface growth.


Pssm-ID: 461138  Cd Length: 148  Bit Score: 217.07  E-value: 7.45e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940753915   9 VPWHSPAEFIQVHQWFYaplteDGTPDIRAQECALRRVKAWEARGKLPHAIDSTASFVGAIVRD--WSQTCSDQDLRLMY 86
Cdd:pfam04031   1 VPWRSWAEWLQVRQWLY-----DDSDDPDARRRALNRVSAWKSRGNLPHAVESTALLLEAILLDeeGSLGGSEYELRLLY 75
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1940753915  87 SMVFIRFVNGYVDGFQTSNSAKSIAYLAvEKVGMPKWFVELRHTATHDYLPSLAILRSAAQQALAWINDNYWIP 160
Cdd:pfam04031  76 SMAIVRFVNGLLDPKQKGQYAISMASLA-KELGLPSWFVELRHEATHEELPSLEVLRRAAKQALDWLWDNYWLP 148
 
Name Accession Description Interval E-value
Las1 pfam04031
Las1-like; Las1 is an essential nuclear protein involved in cell morphogenesis and cell ...
9-160 7.45e-68

Las1-like; Las1 is an essential nuclear protein involved in cell morphogenesis and cell surface growth.


Pssm-ID: 461138  Cd Length: 148  Bit Score: 217.07  E-value: 7.45e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940753915   9 VPWHSPAEFIQVHQWFYaplteDGTPDIRAQECALRRVKAWEARGKLPHAIDSTASFVGAIVRD--WSQTCSDQDLRLMY 86
Cdd:pfam04031   1 VPWRSWAEWLQVRQWLY-----DDSDDPDARRRALNRVSAWKSRGNLPHAVESTALLLEAILLDeeGSLGGSEYELRLLY 75
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1940753915  87 SMVFIRFVNGYVDGFQTSNSAKSIAYLAvEKVGMPKWFVELRHTATHDYLPSLAILRSAAQQALAWINDNYWIP 160
Cdd:pfam04031  76 SMAIVRFVNGLLDPKQKGQYAISMASLA-KELGLPSWFVELRHEATHEELPSLEVLRRAAKQALDWLWDNYWLP 148
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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