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Conserved domains on  [gi|1860669106|gb|KAF5368428|]
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hypothetical protein D9758_002210 [Tetrapyrgos nigripes]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Herpes_BLLF1 super family cl37540
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
120-256 1.14e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


The actual alignment was detected with superfamily member pfam05109:

Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 44.14  E-value: 1.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1860669106 120 TTADVVGDTPVAqdalsNTKDLSPITPEMSP---NTEHALPDPSDVPPSSNDPAPASSAPTKDVSPGHGDHHMEEDSVDS 196
Cdd:pfam05109 469 STADVTSPTPAG-----TTSGASPVTPSPSPrdnGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPNATSPTLGKTS 543
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1860669106 197 PAVVFGTGRGRGSRPRLAVQPPKKRAKIVPEGQSDiPTDMTSAGVARETSvppiETIGES 256
Cdd:pfam05109 544 PTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTS-PTSAVTTPTPNATS----PTVGET 598
 
Name Accession Description Interval E-value
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
120-256 1.14e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 44.14  E-value: 1.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1860669106 120 TTADVVGDTPVAqdalsNTKDLSPITPEMSP---NTEHALPDPSDVPPSSNDPAPASSAPTKDVSPGHGDHHMEEDSVDS 196
Cdd:pfam05109 469 STADVTSPTPAG-----TTSGASPVTPSPSPrdnGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPNATSPTLGKTS 543
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1860669106 197 PAVVFGTGRGRGSRPRLAVQPPKKRAKIVPEGQSDiPTDMTSAGVARETSvppiETIGES 256
Cdd:pfam05109 544 PTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTS-PTSAVTTPTPNATS----PTVGET 598
 
Name Accession Description Interval E-value
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
120-256 1.14e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 44.14  E-value: 1.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1860669106 120 TTADVVGDTPVAqdalsNTKDLSPITPEMSP---NTEHALPDPSDVPPSSNDPAPASSAPTKDVSPGHGDHHMEEDSVDS 196
Cdd:pfam05109 469 STADVTSPTPAG-----TTSGASPVTPSPSPrdnGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPNATSPTLGKTS 543
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1860669106 197 PAVVFGTGRGRGSRPRLAVQPPKKRAKIVPEGQSDiPTDMTSAGVARETSvppiETIGES 256
Cdd:pfam05109 544 PTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTS-PTSAVTTPTPNATS----PTVGET 598
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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