|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00178 |
PTZ00178 |
60S ribosomal protein L17; Provisional |
1-172 |
2.73e-109 |
|
60S ribosomal protein L17; Provisional
Pssm-ID: 240306 Cd Length: 181 Bit Score: 317.40 E-value: 2.73e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWTQ 80
Cdd:PTZ00178 1 MVKYARKPQNPSKSAKAKGSDLRVHFKNTYETARAIKGMKLARAQKYLEDVLAKKRCVPFRRFNGGVGRTAQAKEFGHTQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 81 GRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKP 160
Cdd:PTZ00178 81 GRWPEKSVKFVLSLLKNAEANAEAKGLDVEKLVISHVQVNRAPRGRRRTYRAHGRINPFMSSPCHIELIATEKDETVPKP 160
|
170
....*....|..
gi 1830510212 161 EEEVAQFEDQKL 172
Cdd:PTZ00178 161 KEAPKKQTKKQL 172
|
|
| uL22_arch_euk |
TIGR01038 |
ribosomal protein uL22, eukaryotic/archaeal form; This model describes the ribosomal protein ... |
4-153 |
2.39e-89 |
|
ribosomal protein uL22, eukaryotic/archaeal form; This model describes the ribosomal protein uL22 of the eukaryotic cytosol and of the Archaea, previously designated as L17, L22, and L23. The corresponding bacterial form of uL22 is described by a separate model. [Protein synthesis, Ribosomal proteins: synthesis and modification]
Pssm-ID: 273409 Cd Length: 148 Bit Score: 265.47 E-value: 2.39e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 4 YSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAkqWGWTQGRW 83
Cdd:TIGR01038 1 YSYKPEDPTKSAKARGRNLRISFKNARETCRAIRGMELDKARKYLEDVIAMKRAVPFRRYNGKVGHRAGL--WGWTAGRY 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 84 PKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEK 153
Cdd:TIGR01038 79 PVKAAKFILKVLQNAEANAEYKGLDVEKLKIIHIQANKGPVIRRWMPRAFGRATPYNSSTTHIELVVEEK 148
|
|
| Ribosomal_L22 |
pfam00237 |
Ribosomal protein L22p/L17e; This family includes L22 from prokaryotes and chloroplasts and ... |
17-151 |
5.23e-48 |
|
Ribosomal protein L22p/L17e; This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.
Pssm-ID: 459725 Cd Length: 104 Bit Score: 157.94 E-value: 5.23e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 17 SRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVtlkkqcvpfrrynggvgrcaqakqwgwtqgrwPKKSAEFLLHMLK 96
Cdd:pfam00237 1 AKARNLRISPKKARLVADLIRGMSVDEALAILKFS--------------------------------PKKAAKIVLKLLK 48
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1830510212 97 NAESNAELKGL-DVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151
Cdd:pfam00237 49 SAIANAENKGNlDVDNLYISEIQVDKGPTLKRIRPRARGRAGPIRKRTSHITVVLK 104
|
|
| Ribosomal_L22 |
cd00336 |
Ribosomal protein L22/L17e. L22 (L17 in eukaryotes) is a core protein of the large ribosomal ... |
15-150 |
1.30e-40 |
|
Ribosomal protein L22/L17e. L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit. It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper folding and stabilizing the conformation of 23S rRNA. L22 is the largest protein contributor to the surface of the polypeptide exit channel, the tunnel through which the polypeptide product passes. L22 is also one of six proteins located at the putative translocon binding site on the exterior surface of the ribosome.
Pssm-ID: 238205 Cd Length: 105 Bit Score: 138.78 E-value: 1.30e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 15 CKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVtlkkqcvpfrrynggvgrcaqakqwgwtqgrwPKKSAEFLLHM 94
Cdd:cd00336 1 AKAKGRYLRISPKKARLVARLIRGMSVDEALAQLEFV--------------------------------PKKAAKIILKL 48
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1830510212 95 LKNAESNAELKGL-DVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMIL 150
Cdd:cd00336 49 LKSAEANAENNGLdDPDKLYIKHIQVNKGPTLKRRRPRARGRANPIRKRTCHITVVL 105
|
|
| RplV |
COG0091 |
Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L22 ... |
16-153 |
2.26e-25 |
|
Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L22 is part of the Pathway/BioSystem: Ribosome 50S subunit
Pssm-ID: 439861 Cd Length: 110 Bit Score: 98.58 E-value: 2.26e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 16 KSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDvtlkkqcvpfrrynggvgrcaqakqwgwtqgrWPKKSAEFLLHML 95
Cdd:COG0091 4 KAKLRYVRISPRKARLVADLIRGKKVEEALAILEF--------------------------------SPKKAARIVLKVL 51
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1830510212 96 KNAESNAELK-GLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEK 153
Cdd:COG0091 52 KSAIANAENNnGLDVDNLVVKEIFVDKGPTLKRFRPRARGRATRIRKRTSHITVVVSEK 110
|
|
| Methyltransf_12 |
pfam08242 |
Methyltransferase domain; Members of this family are SAM dependent methyltransferases. |
175-273 |
8.20e-20 |
|
Methyltransferase domain; Members of this family are SAM dependent methyltransferases.
Pssm-ID: 400515 [Multi-domain] Cd Length: 98 Bit Score: 83.19 E-value: 8.20e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 175 LEAGCGVGNCLFPLLEEDPDIFAYACDFSPRAV----EYVKQNPLYDTERCKVFQCDLTKDDllehvpPESVDVVTLIFV 250
Cdd:pfam08242 1 LEIGCGTGTLLRALLEALPGLEYTGLDISPAALeaarERLAALGLLNAVRVELFQLDLGELD------PGSFDVVVASNV 74
|
90 100
....*....|....*....|...
gi 1830510212 251 LSavHPDKMHLVLQNIYKVLKPG 273
Cdd:pfam08242 75 LH--HLADPRAVLRNIRRLLKPG 95
|
|
| AdoMet_MTases |
cd02440 |
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
173-278 |
2.81e-16 |
|
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Pssm-ID: 100107 [Multi-domain] Cd Length: 107 Bit Score: 74.00 E-value: 2.81e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 173 TMLEAGCGVGNCLFPLLEeDPDIFAYACDFSPRAVEYVKQNPLYD-TERCKVFQCDLTKddlLEHVPPESVDVVTLIFVL 251
Cdd:cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALlADNVEVLKGDAEE---LPPEADESFDVIISDPPL 76
|
90 100
....*....|....*....|....*..
gi 1830510212 252 SAVHPDkMHLVLQNIYKVLKPGKSVLF 278
Cdd:cd02440 77 HHLVED-LARFLEEARRLLKPGGVLVL 102
|
|
| UbiE |
COG2226 |
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ... |
175-290 |
6.93e-13 |
|
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis
Pssm-ID: 441828 [Multi-domain] Cd Length: 143 Bit Score: 65.40 E-value: 6.93e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 175 LEAGCGVGNCLFPLLEEDPDIfaYACDFSPRAVEYVKQNPLYDTERCKVFQCDLTKDDLlehvPPESVDVVTLIFVLSAV 254
Cdd:COG2226 27 LDLGCGTGRLALALAERGARV--TGVDISPEMLELARERAAEAGLNVEFVVGDAEDLPF----PDGSFDLVISSFVLHHL 100
|
90 100 110
....*....|....*....|....*....|....*.
gi 1830510212 255 hPDKmHLVLQNIYKVLKPGKSVLFRDYGLYDHAMLR 290
Cdd:COG2226 101 -PDP-ERALAEIARVLKPGGRLVVVDFSPPDLAELE 134
|
|
| PRK06202 |
PRK06202 |
hypothetical protein; Provisional |
127-321 |
1.31e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 180466 [Multi-domain] Cd Length: 232 Bit Score: 43.07 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 127 RRTYRAHGRINPYMSSpchiemiltekEQIVPKPEEEVAQFEDQKLTMLEAGCGVGNCLFPLL----EEDPDIFAYACDF 202
Cdd:PRK06202 28 DRTYAGFRRVNRIVAG-----------WRGLYRRLLRPALSADRPLTLLDIGCGGGDLAIDLArwarRDGLRLEVTAIDP 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 203 SPRAVEYVKQNPLYDTERCKVFqcdlTKDDLLEHvpPESVDVVTLIFVLSAVHPDKMHLVLQNIYKVLKpgKSVLFRDYG 282
Cdd:PRK06202 97 DPRAVAFARANPRRPGVTFRQA----VSDELVAE--GERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLI 168
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1830510212 283 LYDHAMLRFKAGSK-LAENFYVRQDGTRSY---FFTDEFLARL 321
Cdd:PRK06202 169 RSRLAYALFWAGTRlLSRSSFVHTDGLLSVrrsYTPAELAALA 211
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00178 |
PTZ00178 |
60S ribosomal protein L17; Provisional |
1-172 |
2.73e-109 |
|
60S ribosomal protein L17; Provisional
Pssm-ID: 240306 Cd Length: 181 Bit Score: 317.40 E-value: 2.73e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWTQ 80
Cdd:PTZ00178 1 MVKYARKPQNPSKSAKAKGSDLRVHFKNTYETARAIKGMKLARAQKYLEDVLAKKRCVPFRRFNGGVGRTAQAKEFGHTQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 81 GRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKP 160
Cdd:PTZ00178 81 GRWPEKSVKFVLSLLKNAEANAEAKGLDVEKLVISHVQVNRAPRGRRRTYRAHGRINPFMSSPCHIELIATEKDETVPKP 160
|
170
....*....|..
gi 1830510212 161 EEEVAQFEDQKL 172
Cdd:PTZ00178 161 KEAPKKQTKKQL 172
|
|
| uL22_arch_euk |
TIGR01038 |
ribosomal protein uL22, eukaryotic/archaeal form; This model describes the ribosomal protein ... |
4-153 |
2.39e-89 |
|
ribosomal protein uL22, eukaryotic/archaeal form; This model describes the ribosomal protein uL22 of the eukaryotic cytosol and of the Archaea, previously designated as L17, L22, and L23. The corresponding bacterial form of uL22 is described by a separate model. [Protein synthesis, Ribosomal proteins: synthesis and modification]
Pssm-ID: 273409 Cd Length: 148 Bit Score: 265.47 E-value: 2.39e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 4 YSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAkqWGWTQGRW 83
Cdd:TIGR01038 1 YSYKPEDPTKSAKARGRNLRISFKNARETCRAIRGMELDKARKYLEDVIAMKRAVPFRRYNGKVGHRAGL--WGWTAGRY 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 84 PKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEK 153
Cdd:TIGR01038 79 PVKAAKFILKVLQNAEANAEYKGLDVEKLKIIHIQANKGPVIRRWMPRAFGRATPYNSSTTHIELVVEEK 148
|
|
| rpl22p |
PRK04223 |
50S ribosomal protein L22P; Reviewed |
1-152 |
1.96e-50 |
|
50S ribosomal protein L22P; Reviewed
Pssm-ID: 179794 Cd Length: 153 Bit Score: 166.19 E-value: 1.96e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 1 MVRYSLDPEnPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRcaQAKQWGWTQ 80
Cdd:PRK04223 3 RINYSVKAD-PEKTAKAMGRELPISPKHSVEIAREIRGMKLDEAKAYLEDVIALKRAVPFKRHNKKVGH--RKGIDGWPA 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1830510212 81 GRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTE 152
Cdd:PRK04223 80 GRYPVKAAKAFLKLLENAEANAEYKGLDTEKLVIVHIAAHKGRVIKGYMPRAFGRATPKNTETVNIEVILEE 151
|
|
| Ribosomal_L22 |
pfam00237 |
Ribosomal protein L22p/L17e; This family includes L22 from prokaryotes and chloroplasts and ... |
17-151 |
5.23e-48 |
|
Ribosomal protein L22p/L17e; This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.
Pssm-ID: 459725 Cd Length: 104 Bit Score: 157.94 E-value: 5.23e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 17 SRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVtlkkqcvpfrrynggvgrcaqakqwgwtqgrwPKKSAEFLLHMLK 96
Cdd:pfam00237 1 AKARNLRISPKKARLVADLIRGMSVDEALAILKFS--------------------------------PKKAAKIVLKLLK 48
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1830510212 97 NAESNAELKGL-DVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151
Cdd:pfam00237 49 SAIANAENKGNlDVDNLYISEIQVDKGPTLKRIRPRARGRAGPIRKRTSHITVVLK 104
|
|
| Ribosomal_L22 |
cd00336 |
Ribosomal protein L22/L17e. L22 (L17 in eukaryotes) is a core protein of the large ribosomal ... |
15-150 |
1.30e-40 |
|
Ribosomal protein L22/L17e. L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit. It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper folding and stabilizing the conformation of 23S rRNA. L22 is the largest protein contributor to the surface of the polypeptide exit channel, the tunnel through which the polypeptide product passes. L22 is also one of six proteins located at the putative translocon binding site on the exterior surface of the ribosome.
Pssm-ID: 238205 Cd Length: 105 Bit Score: 138.78 E-value: 1.30e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 15 CKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVtlkkqcvpfrrynggvgrcaqakqwgwtqgrwPKKSAEFLLHM 94
Cdd:cd00336 1 AKAKGRYLRISPKKARLVARLIRGMSVDEALAQLEFV--------------------------------PKKAAKIILKL 48
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1830510212 95 LKNAESNAELKGL-DVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMIL 150
Cdd:cd00336 49 LKSAEANAENNGLdDPDKLYIKHIQVNKGPTLKRRRPRARGRANPIRKRTCHITVVL 105
|
|
| RplV |
COG0091 |
Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L22 ... |
16-153 |
2.26e-25 |
|
Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L22 is part of the Pathway/BioSystem: Ribosome 50S subunit
Pssm-ID: 439861 Cd Length: 110 Bit Score: 98.58 E-value: 2.26e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 16 KSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDvtlkkqcvpfrrynggvgrcaqakqwgwtqgrWPKKSAEFLLHML 95
Cdd:COG0091 4 KAKLRYVRISPRKARLVADLIRGKKVEEALAILEF--------------------------------SPKKAARIVLKVL 51
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1830510212 96 KNAESNAELK-GLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEK 153
Cdd:COG0091 52 KSAIANAENNnGLDVDNLVVKEIFVDKGPTLKRFRPRARGRATRIRKRTSHITVVVSEK 110
|
|
| Methyltransf_12 |
pfam08242 |
Methyltransferase domain; Members of this family are SAM dependent methyltransferases. |
175-273 |
8.20e-20 |
|
Methyltransferase domain; Members of this family are SAM dependent methyltransferases.
Pssm-ID: 400515 [Multi-domain] Cd Length: 98 Bit Score: 83.19 E-value: 8.20e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 175 LEAGCGVGNCLFPLLEEDPDIFAYACDFSPRAV----EYVKQNPLYDTERCKVFQCDLTKDDllehvpPESVDVVTLIFV 250
Cdd:pfam08242 1 LEIGCGTGTLLRALLEALPGLEYTGLDISPAALeaarERLAALGLLNAVRVELFQLDLGELD------PGSFDVVVASNV 74
|
90 100
....*....|....*....|...
gi 1830510212 251 LSavHPDKMHLVLQNIYKVLKPG 273
Cdd:pfam08242 75 LH--HLADPRAVLRNIRRLLKPG 95
|
|
| Methyltransf_25 |
pfam13649 |
Methyltransferase domain; This family appears to be a methyltransferase domain. |
175-273 |
6.36e-17 |
|
Methyltransferase domain; This family appears to be a methyltransferase domain.
Pssm-ID: 463945 [Multi-domain] Cd Length: 96 Bit Score: 75.29 E-value: 6.36e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 175 LEAGCGVGNCLFPLLEEdPDIFAYACDFSPRAVEYVKQNPLYDTERCKVFQCDLTKDDLlehvPPESVDVVTLIFVLSAV 254
Cdd:pfam13649 2 LDLGCGTGRLTLALARR-GGARVTGVDLSPEMLERARERAAEAGLNVEFVQGDAEDLPF----PDGSFDLVVSSGVLHHL 76
|
90
....*....|....*....
gi 1830510212 255 HPDKMHLVLQNIYKVLKPG 273
Cdd:pfam13649 77 PDPDLEAALREIARVLKPG 95
|
|
| AdoMet_MTases |
cd02440 |
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
173-278 |
2.81e-16 |
|
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Pssm-ID: 100107 [Multi-domain] Cd Length: 107 Bit Score: 74.00 E-value: 2.81e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 173 TMLEAGCGVGNCLFPLLEeDPDIFAYACDFSPRAVEYVKQNPLYD-TERCKVFQCDLTKddlLEHVPPESVDVVTLIFVL 251
Cdd:cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALlADNVEVLKGDAEE---LPPEADESFDVIISDPPL 76
|
90 100
....*....|....*....|....*..
gi 1830510212 252 SAVHPDkMHLVLQNIYKVLKPGKSVLF 278
Cdd:cd02440 77 HHLVED-LARFLEEARRLLKPGGVLVL 102
|
|
| UbiE |
COG2226 |
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ... |
175-290 |
6.93e-13 |
|
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis
Pssm-ID: 441828 [Multi-domain] Cd Length: 143 Bit Score: 65.40 E-value: 6.93e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 175 LEAGCGVGNCLFPLLEEDPDIfaYACDFSPRAVEYVKQNPLYDTERCKVFQCDLTKDDLlehvPPESVDVVTLIFVLSAV 254
Cdd:COG2226 27 LDLGCGTGRLALALAERGARV--TGVDISPEMLELARERAAEAGLNVEFVVGDAEDLPF----PDGSFDLVISSFVLHHL 100
|
90 100 110
....*....|....*....|....*....|....*.
gi 1830510212 255 hPDKmHLVLQNIYKVLKPGKSVLFRDYGLYDHAMLR 290
Cdd:COG2226 101 -PDP-ERALAEIARVLKPGGRLVVVDFSPPDLAELE 134
|
|
| SmtA |
COG0500 |
SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, ... |
169-338 |
1.47e-12 |
|
SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only];
Pssm-ID: 440266 [Multi-domain] Cd Length: 199 Bit Score: 66.09 E-value: 1.47e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 169 DQKLTMLEAGCGVGNCLFPLLEEDPDIFaYACDFSPRAVEYVKQN-PLYDTERCKVFQCDLTKddlLEHVPPESVDVVTL 247
Cdd:COG0500 25 PKGGRVLDLGCGTGRNLLALAARFGGRV-IGIDLSPEAIALARARaAKAGLGNVEFLVADLAE---LDPLPAESFDLVVA 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 248 IFVLSAVHPDKMHLVLQNIYKVLKPGKSVLF--------RDYGLYDHAMLRFKAGSKLAENFYVRQDGTRSYFFtDEFLA 319
Cdd:COG0500 101 FGVLHHLPPEEREALLRELARALKPGGVLLLsasdaaaaLSLARLLLLATASLLELLLLLRLLALELYLRALLA-AAATE 179
|
170
....*....|....*....
gi 1830510212 320 RLFLDTGYEEEVNEYVFRE 338
Cdd:COG0500 180 DLRSDALLESANALEYLLS 198
|
|
| UbiG |
COG2227 |
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and ... |
164-281 |
3.28e-12 |
|
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and metabolism]; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase is part of the Pathway/BioSystem: Ubiquinone biosynthesis
Pssm-ID: 441829 [Multi-domain] Cd Length: 126 Bit Score: 63.11 E-value: 3.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 164 VAQFEDQKLTMLEAGCGVGNCLFPLLEEDPDIfaYACDFSPRAVEYVKQNplYDTERCKVFQCDLTKDDLlehvPPESVD 243
Cdd:COG2227 18 LARLLPAGGRVLDVGCGTGRLALALARRGADV--TGVDISPEALEIARER--AAELNVDFVQGDLEDLPL----EDGSFD 89
|
90 100 110
....*....|....*....|....*....|....*...
gi 1830510212 244 VVTLIFVLSavHPDKMHLVLQNIYKVLKPGKSVLFRDY 281
Cdd:COG2227 90 LVICSEVLE--HLPDPAALLRELARLLKPGGLLLLSTP 125
|
|
| Methyltransf_11 |
pfam08241 |
Methyltransferase domain; Members of this family are SAM dependent methyltransferases. |
175-278 |
3.28e-11 |
|
Methyltransferase domain; Members of this family are SAM dependent methyltransferases.
Pssm-ID: 462406 [Multi-domain] Cd Length: 94 Bit Score: 59.22 E-value: 3.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 175 LEAGCGVGNCLFPLLEEDPDIfaYACDFSPRAVEYVKQNplYDTERCKVFQCDLTKDDLlehvPPESVDVVTLIFVLSav 254
Cdd:pfam08241 1 LDVGCGTGLLTELLARLGARV--TGVDISPEMLELAREK--APREGLTFVVGDAEDLPF----PDNSFDLVLSSEVLH-- 70
|
90 100
....*....|....*....|....
gi 1830510212 255 HPDKMHLVLQNIYKVLKPGKSVLF 278
Cdd:pfam08241 71 HVEDPERALREIARVLKPGGILII 94
|
|
| Methyltransf_23 |
pfam13489 |
Methyltransferase domain; This family appears to be a methyltransferase domain. |
175-328 |
1.01e-10 |
|
Methyltransferase domain; This family appears to be a methyltransferase domain.
Pssm-ID: 404385 [Multi-domain] Cd Length: 162 Bit Score: 59.75 E-value: 1.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 175 LEAGCGVGNCLFPLLEEDPDIFAYacDFSPRAVEYVKQNPLYDTErckvfqcdltkDDLLEHVPPESVDVVTLIFVLSAV 254
Cdd:pfam13489 27 LDFGCGTGIFLRLLRAQGFSVTGV--DPSPIAIERALLNVRFDQF-----------DEQEAAVPAGKFDVIVAREVLEHV 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1830510212 255 HPdkMHLVLQNIYKVLKPGKSVLFRDYGLYDHAmlrfkaGSKLAENFYVRQDGTRSYFFTDEFLARLFLDTGYE 328
Cdd:pfam13489 94 PD--PPALLRQIAALLKPGGLLLLSTPLASDEA------DRLLLEWPYLRPRNGHISLFSARSLKRLLEEAGFE 159
|
|
| Methyltransf_31 |
pfam13847 |
Methyltransferase domain; This family appears to have methyltransferase activity. |
172-281 |
2.21e-10 |
|
Methyltransferase domain; This family appears to have methyltransferase activity.
Pssm-ID: 463998 [Multi-domain] Cd Length: 150 Bit Score: 58.58 E-value: 2.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 172 LTMLEAGCGVGNCLFPLLEED-PDIFAYACDFSPRAVEYVKQN-PLYDTERCKVFQCDLTkdDLLEHVPPESVDVVTLIF 249
Cdd:pfam13847 5 MRVLDLGCGTGHLSFELAEELgPNAEVVGIDISEEAIEKARENaQKLGFDNVEFEQGDIE--ELPELLEDDKFDVVISNC 82
|
90 100 110
....*....|....*....|....*....|...
gi 1830510212 250 VLSAV-HPDKmhlVLQNIYKVLKPGKSVLFRDY 281
Cdd:pfam13847 83 VLNHIpDPDK---VLQEILRVLKPGGRLIISDP 112
|
|
| COG4976 |
COG4976 |
Predicted methyltransferase, contains TPR repeat [General function prediction only]; |
161-273 |
7.25e-10 |
|
Predicted methyltransferase, contains TPR repeat [General function prediction only];
Pssm-ID: 444001 [Multi-domain] Cd Length: 181 Bit Score: 57.70 E-value: 7.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 161 EEEVAQFEDQK-LTMLEAGCGVGNCLFPLLEEDPDIfaYACDFSPRAVEYVKQNPLYDTerckVFQCDLTkdDLLEhvPP 239
Cdd:COG4976 36 EELLARLPPGPfGRVLDLGCGTGLLGEALRPRGYRL--TGVDLSEEMLAKAREKGVYDR----LLVADLA--DLAE--PD 105
|
90 100 110
....*....|....*....|....*....|....
gi 1830510212 240 ESVDVVTLIFVLSavHPDKMHLVLQNIYKVLKPG 273
Cdd:COG4976 106 GRFDLIVAADVLT--YLGDLAAVFAGVARALKPG 137
|
|
| PRK12279 |
PRK12279 |
50S ribosomal protein L22/unknown domain fusion protein; Provisional |
84-171 |
1.35e-08 |
|
50S ribosomal protein L22/unknown domain fusion protein; Provisional
Pssm-ID: 138835 [Multi-domain] Cd Length: 311 Bit Score: 55.85 E-value: 1.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 84 PKKSAEFLLHMLKNAESNAEL--KGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKeqiVPKPE 161
Cdd:PRK12279 40 PKKFAPIVLKLLNSAISNVQHnsKDMDPSKLYIYKIVANQGPTMKRTLPRAKGSADQLFKRTTHLEIVLSDD---VNERE 116
|
90
....*....|
gi 1830510212 162 EEVAQFEDQK 171
Cdd:PRK12279 117 KELAAIKAKK 126
|
|
| rplV_bact |
TIGR01044 |
ribosomal protein L22, bacterial type; This model decribes bacterial and chloroplast ribosomal ... |
82-146 |
2.94e-08 |
|
ribosomal protein L22, bacterial type; This model decribes bacterial and chloroplast ribosomal protein L22. [Protein synthesis, Ribosomal proteins: synthesis and modification]
Pssm-ID: 130116 Cd Length: 103 Bit Score: 50.98 E-value: 2.94e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1830510212 82 RW-PKKSAEFLLHMLKNAESNAELK-GLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHI 146
Cdd:TIGR01044 33 RFtPKKASPIIEKVLASAIANAEHNyGLDANNLVVVTAFVDEGPTLKRIRPRAKGRASRIRKRTSHI 99
|
|
| Tam |
COG4106 |
Trans-aconitate methyltransferase [Energy production and conversion]; |
175-273 |
6.58e-07 |
|
Trans-aconitate methyltransferase [Energy production and conversion];
Pssm-ID: 443282 [Multi-domain] Cd Length: 100 Bit Score: 47.13 E-value: 6.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 175 LEAGCGVGNCLFPLLEEDPDIFAYACDFSPRAVEYVKQN-PlydterckvfQCDLTKDDLLEHVPPESVDVVTLIFVLSa 253
Cdd:COG4106 6 LDLGCGTGRLTALLAERFPGARVTGVDLSPEMLARARARlP----------NVRFVVADLRDLDPPEPFDLVVSNAALH- 74
|
90 100
....*....|....*....|
gi 1830510212 254 vHPDKMHLVLQNIYKVLKPG 273
Cdd:COG4106 75 -WLPDHAALLARLAAALAPG 93
|
|
| Cfa |
COG2230 |
Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport ... |
158-273 |
4.96e-06 |
|
Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport and metabolism];
Pssm-ID: 441831 [Multi-domain] Cd Length: 158 Bit Score: 46.08 E-value: 4.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 158 PKPEEEVAQFEDQKL-------------TMLEAGCGVGNCLFPLLEEdPDIFAYACDFSPRAVEYVKQN----PLydTER 220
Cdd:COG2230 26 EDPDDTLEEAQEAKLdlilrklglkpgmRVLDIGCGWGGLALYLARR-YGVRVTGVTLSPEQLEYARERaaeaGL--ADR 102
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1830510212 221 CKVFQCDLTkddllEHVPPESVDVVTLIFVLSAVHPDKMHLVLQNIYKVLKPG 273
Cdd:COG2230 103 VEVRLADYR-----DLPADGQFDAIVSIGMFEHVGPENYPAYFAKVARLLKPG 150
|
|
| rpl22 |
CHL00034 |
ribosomal protein L22 |
84-153 |
1.15e-05 |
|
ribosomal protein L22
Pssm-ID: 214342 Cd Length: 117 Bit Score: 44.15 E-value: 1.15e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1830510212 84 PKKSAEFLLHMLKNAESNAEL-KGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEK 153
Cdd:CHL00034 47 PYRACYPILKLVYSAAANASHnMGLNKANLFISKAEVDEGPTLKRFRPRAQGRSYPIKKPTCHITIVLKDI 117
|
|
| PRK06202 |
PRK06202 |
hypothetical protein; Provisional |
127-321 |
1.31e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 180466 [Multi-domain] Cd Length: 232 Bit Score: 43.07 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 127 RRTYRAHGRINPYMSSpchiemiltekEQIVPKPEEEVAQFEDQKLTMLEAGCGVGNCLFPLL----EEDPDIFAYACDF 202
Cdd:PRK06202 28 DRTYAGFRRVNRIVAG-----------WRGLYRRLLRPALSADRPLTLLDIGCGGGDLAIDLArwarRDGLRLEVTAIDP 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 203 SPRAVEYVKQNPLYDTERCKVFqcdlTKDDLLEHvpPESVDVVTLIFVLSAVHPDKMHLVLQNIYKVLKpgKSVLFRDYG 282
Cdd:PRK06202 97 DPRAVAFARANPRRPGVTFRQA----VSDELVAE--GERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLI 168
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1830510212 283 LYDHAMLRFKAGSK-LAENFYVRQDGTRSY---FFTDEFLARL 321
Cdd:PRK06202 169 RSRLAYALFWAGTRlLSRSSFVHTDGLLSVrrsYTPAELAALA 211
|
|
| PRK06922 |
PRK06922 |
class I SAM-dependent methyltransferase; |
173-280 |
2.08e-04 |
|
class I SAM-dependent methyltransferase;
Pssm-ID: 180751 [Multi-domain] Cd Length: 677 Bit Score: 43.32 E-value: 2.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830510212 173 TMLEAGCGVGNCLFPLLEEDPDIFAYACDFSPRAVEYVKQNPLYDTERCKVFQCDLTkdDLLEHVPPESVDVVTLIFVL- 251
Cdd:PRK06922 421 TIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAI--NLSSSFEKESVDTIVYSSILh 498
|
90 100 110
....*....|....*....|....*....|....*....
gi 1830510212 252 ---SAVHPDKM---HLV----LQNIYKVLKPGKSVLFRD 280
Cdd:PRK06922 499 elfSYIEYEGKkfnHEVikkgLQSAYEVLKPGGRIIIRD 537
|
|
| |
