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Conserved domains on  [gi|1796362342|gb|KAF0868703|]
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AAA family ATPase, partial [Candidatus Nitrosocosmicus sp. SS]

Protein Classification

CDC48_N domain-containing protein( domain architecture ID 10492274)

CDC48_N domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CDC48_N pfam02359
Cell division protein 48 (CDC48), N-terminal domain; This domain has a double psi-beta barrel ...
 7-88 6.12e-35

Cell division protein 48 (CDC48), N-terminal domain; This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the N-terminus. The VAT-N domain found in AAA ATPases pfam00004 is a substrate 185-residue recognition domain.


:

Pssm-ID: 426738  Cd Length: 85  Bit Score: 113.83  E-value: 6.12e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796362342  7 SLKVLEAYTRDVGRGVARIDYESMDALSASTGDVVEIKGKRRTVAKCLPLYPSDEGKGIIRVDGLVRNNAGVAIGDTVIV 86
Cdd:pfam02359  1 RLRVAEAPDRDVGRGIARLNPEDMEELGLFPGDVVEIKGKRKTVAIVWSAYPEDEGPGIIRMDGVTRKNAGVSIGDTVTV 80


                 ..
gi 1796362342 87 RK 88
Cdd:pfam02359 81 RP 82
 
Name Accession Description Interval E-value
CDC48_N pfam02359
Cell division protein 48 (CDC48), N-terminal domain; This domain has a double psi-beta barrel ...
 7-88 6.12e-35

Cell division protein 48 (CDC48), N-terminal domain; This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the N-terminus. The VAT-N domain found in AAA ATPases pfam00004 is a substrate 185-residue recognition domain.


Pssm-ID: 426738  Cd Length: 85  Bit Score: 113.83  E-value: 6.12e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796362342  7 SLKVLEAYTRDVGRGVARIDYESMDALSASTGDVVEIKGKRRTVAKCLPLYPSDEGKGIIRVDGLVRNNAGVAIGDTVIV 86
Cdd:pfam02359  1 RLRVAEAPDRDVGRGIARLNPEDMEELGLFPGDVVEIKGKRKTVAIVWSAYPEDEGPGIIRMDGVTRKNAGVSIGDTVTV 80


                 ..
gi 1796362342 87 RK 88
Cdd:pfam02359 81 RP 82
CDC48_N smart01073
Cell division protein 48 (CDC48) N-terminal domain; This domain has a double psi-beta barrel ...
 8-88 1.53e-28

Cell division protein 48 (CDC48) N-terminal domain; This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the N-terminus. The VAT-N domain found in AAA ATPases is a substrate 185-residue recognition domain.


Pssm-ID: 215012 [Multi-domain]  Cd Length: 82  Bit Score: 97.68  E-value: 1.53e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796362342   8 LKVLEA-YTRDVGRGVARIDYESMDALSASTGDVVEIKGKRRTVAKCLPLYPSDEGkGIIRVDGLVRNNAGVAIGDTVIV 86
Cdd:smart01073  1 LRVAEApSDEDVGRGIARLSPEDMDELGLFPGDYVLITGKRRTVAIVWPAYPEDPG-GIIRIDGVQRKNAGVSIGDTVTV 79


                  ..
gi 1796362342  87 RK 88
Cdd:smart01073 80 RK 81
CDC48 TIGR01243
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two ...
 6-88 1.88e-26

AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.


Pssm-ID: 273521 [Multi-domain]  Cd Length: 733  Bit Score: 100.75  E-value: 1.88e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796362342   6 ISLKVLEAYTRDVGRGVARIDYESMDALSASTGDVVEI-KGKRRTVAKCLPLYPSDEGKGIIRVDGLVRNNAGVAIGDTV 84
Cdd:TIGR01243   2 VELRVAEAYPRDVGRGIVRIDRQTAARLGVEPGDFVEIeKGDRSVVAIVWPLRPDDEGRGIIRMDGYLRANAGVTIGDTV 81


                  ....
gi 1796362342  85 IVRK 88
Cdd:TIGR01243  82 TVER 85
 
Name Accession Description Interval E-value
CDC48_N pfam02359
Cell division protein 48 (CDC48), N-terminal domain; This domain has a double psi-beta barrel ...
 7-88 6.12e-35

Cell division protein 48 (CDC48), N-terminal domain; This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the N-terminus. The VAT-N domain found in AAA ATPases pfam00004 is a substrate 185-residue recognition domain.


Pssm-ID: 426738  Cd Length: 85  Bit Score: 113.83  E-value: 6.12e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796362342  7 SLKVLEAYTRDVGRGVARIDYESMDALSASTGDVVEIKGKRRTVAKCLPLYPSDEGKGIIRVDGLVRNNAGVAIGDTVIV 86
Cdd:pfam02359  1 RLRVAEAPDRDVGRGIARLNPEDMEELGLFPGDVVEIKGKRKTVAIVWSAYPEDEGPGIIRMDGVTRKNAGVSIGDTVTV 80


                 ..
gi 1796362342 87 RK 88
Cdd:pfam02359 81 RP 82
CDC48_N smart01073
Cell division protein 48 (CDC48) N-terminal domain; This domain has a double psi-beta barrel ...
 8-88 1.53e-28

Cell division protein 48 (CDC48) N-terminal domain; This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the N-terminus. The VAT-N domain found in AAA ATPases is a substrate 185-residue recognition domain.


Pssm-ID: 215012 [Multi-domain]  Cd Length: 82  Bit Score: 97.68  E-value: 1.53e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796362342   8 LKVLEA-YTRDVGRGVARIDYESMDALSASTGDVVEIKGKRRTVAKCLPLYPSDEGkGIIRVDGLVRNNAGVAIGDTVIV 86
Cdd:smart01073  1 LRVAEApSDEDVGRGIARLSPEDMDELGLFPGDYVLITGKRRTVAIVWPAYPEDPG-GIIRIDGVQRKNAGVSIGDTVTV 79


                  ..
gi 1796362342  87 RK 88
Cdd:smart01073 80 RK 81
CDC48 TIGR01243
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two ...
 6-88 1.88e-26

AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.


Pssm-ID: 273521 [Multi-domain]  Cd Length: 733  Bit Score: 100.75  E-value: 1.88e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796362342   6 ISLKVLEAYTRDVGRGVARIDYESMDALSASTGDVVEI-KGKRRTVAKCLPLYPSDEGKGIIRVDGLVRNNAGVAIGDTV 84
Cdd:TIGR01243   2 VELRVAEAYPRDVGRGIVRIDRQTAARLGVEPGDFVEIeKGDRSVVAIVWPLRPDDEGRGIIRMDGYLRANAGVTIGDTV 81


                  ....
gi 1796362342  85 IVRK 88
Cdd:TIGR01243  82 TVER 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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