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Conserved domains on  [gi|1785622599|gb|KAE9713178|]
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peptidoglycan-associated lipoprotein Pal [Escherichia coli]

Protein Classification

PRK10802 family protein( domain architecture ID 11484955)

PRK10802 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
1-173 1.12e-123

peptidoglycan-associated lipoprotein Pal;


:

Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 345.32  E-value: 1.12e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785622599   1 MQLNKVLKGLMIALPVMAIAACSSNKNASNDGSEGMLGAGTGMDANGGNGNMSSEEQARLQMQQLQQNNIVYFDLDKYDI 80
Cdd:PRK10802    1 MQLNKVLKGLMLALPVMAIAACSSNKNASNDQSEGMLGAGTGMDANGGNGNMSSEEQARLQMQQLQQNNIVYFDLDKYDI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785622599  81 RSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDE 160
Cdd:PRK10802   81 RSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDE 160

                         170
                  ....*....|...
gi 1785622599 161 AAYSKNRRAVLVY 173
Cdd:PRK10802  161 AAYAKNRRAVLVY 173
 
Name Accession Description Interval E-value
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
1-173 1.12e-123

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 345.32  E-value: 1.12e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785622599   1 MQLNKVLKGLMIALPVMAIAACSSNKNASNDGSEGMLGAGTGMDANGGNGNMSSEEQARLQMQQLQQNNIVYFDLDKYDI 80
Cdd:PRK10802    1 MQLNKVLKGLMLALPVMAIAACSSNKNASNDQSEGMLGAGTGMDANGGNGNMSSEEQARLQMQQLQQNNIVYFDLDKYDI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785622599  81 RSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDE 160
Cdd:PRK10802   81 RSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDE 160

                         170
                  ....*....|...
gi 1785622599 161 AAYSKNRRAVLVY 173
Cdd:PRK10802  161 AAYAKNRRAVLVY 173
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 70-173 1.27e-69

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 205.87  E-value: 1.27e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785622599  70 IVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYG 149
Cdd:TIGR02802   1 RVYFDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYG 80

                          90       100
                  ....*....|....*....|....
gi 1785622599 150 KEKPAVLGHDEAAYSKNRRAVLVY 173
Cdd:TIGR02802  81 KEKPAALGHDEAAWAKNRRAVLVY 104
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 71-173 1.13e-41

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 141.46  E-value: 1.13e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785622599  71 VYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGK 150
Cdd:COG2885   189 VYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVSKGIPASRITAVGYGE 268

                          90       100
                  ....*....|....*....|...
gi 1785622599 151 EKPAVLGHDEAAYSKNRRAVLVY 173
Cdd:COG2885   269 SRPVASNDTEEGRAKNRRVEIVV 291
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 71-172 5.00e-41

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 133.45  E-value: 5.00e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785622599  71 VYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGK 150
Cdd:cd07185     4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYGE 83

                          90       100
                  ....*....|....*....|..
gi 1785622599 151 EKPAVLGHDEAAYSKNRRAVLV 172
Cdd:cd07185    84 SRPIASNDTEEGRAKNRRVEIV 105
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 73-166 1.24e-21

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 83.95  E-value: 1.24e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785622599  73 FDLDKYDIRSDFAQMLDAHANFLRSNPSYK-VTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKE 151
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKNtITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 1785622599 152 KPAVLGHDEAAYSKN 166
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
 
Name Accession Description Interval E-value
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
1-173 1.12e-123

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 345.32  E-value: 1.12e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785622599   1 MQLNKVLKGLMIALPVMAIAACSSNKNASNDGSEGMLGAGTGMDANGGNGNMSSEEQARLQMQQLQQNNIVYFDLDKYDI 80
Cdd:PRK10802    1 MQLNKVLKGLMLALPVMAIAACSSNKNASNDQSEGMLGAGTGMDANGGNGNMSSEEQARLQMQQLQQNNIVYFDLDKYDI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785622599  81 RSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDE 160
Cdd:PRK10802   81 RSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDE 160

                         170
                  ....*....|...
gi 1785622599 161 AAYSKNRRAVLVY 173
Cdd:PRK10802  161 AAYAKNRRAVLVY 173
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 70-173 1.27e-69

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 205.87  E-value: 1.27e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785622599  70 IVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYG 149
Cdd:TIGR02802   1 RVYFDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYG 80

                          90       100
                  ....*....|....*....|....
gi 1785622599 150 KEKPAVLGHDEAAYSKNRRAVLVY 173
Cdd:TIGR02802  81 KEKPAALGHDEAAWAKNRRAVLVY 104
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 71-173 1.13e-41

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 141.46  E-value: 1.13e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785622599  71 VYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGK 150
Cdd:COG2885   189 VYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVSKGIPASRITAVGYGE 268

                          90       100
                  ....*....|....*....|...
gi 1785622599 151 EKPAVLGHDEAAYSKNRRAVLVY 173
Cdd:COG2885   269 SRPVASNDTEEGRAKNRRVEIVV 291
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 71-172 5.00e-41

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 133.45  E-value: 5.00e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785622599  71 VYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGK 150
Cdd:cd07185     4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYGE 83

                          90       100
                  ....*....|....*....|..
gi 1785622599 151 EKPAVLGHDEAAYSKNRRAVLV 172
Cdd:cd07185    84 SRPIASNDTEEGRAKNRRVEIV 105
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 73-166 1.24e-21

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 83.95  E-value: 1.24e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785622599  73 FDLDKYDIRSDFAQMLDAHANFLRSNPSYK-VTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKE 151
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKNtITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 1785622599 152 KPAVLGHDEAAYSKN 166
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
MotB COG1360
Flagellar motor protein MotB [Cell motility];
71-172 2.07e-16

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 72.57  E-value: 2.07e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785622599  71 VYFDLDKYDIRSDFAQMLDAHANFLRSNPsYKVTVEGHADER--GTPEY--NISLGERRANAVKMYLQGKGVSADQISIV 146
Cdd:COG1360    61 VLFDSGSAELTPEGRELLDKIAAVLAEVP-NRIRVEGHTDNVpiSTARFpsNWELSAARAAAVVRYLIEGGVPPERLSAV 139

                          90       100
                  ....*....|....*....|....*.
gi 1785622599 147 SYGKEKPAVLGHDEAAYSKNRRAVLV 172
Cdd:COG1360   140 GYGDTRPLAPNDTPEGRARNRRVEIV 165
PRK10808 PRK10808
outer membrane protein A; Reviewed
 71-153 1.60e-09

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 55.47  E-value: 1.60e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785622599  71 VYFDLDKYDIRSDFAQMLDAHANFLRS-NPSY-KVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSY 148
Cdd:PRK10808  226 VLFNFNKATLKPEGQQALDQLYSQLSNlDPKDgSVVVLGYTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPADKISARGM 305


                  ....*
gi 1785622599 149 GKEKP 153
Cdd:PRK10808  306 GKSNP 310
PRK10510 PRK10510
OmpA family lipoprotein;
69-168 7.22e-08

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 50.26  E-value: 7.22e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785622599  69 NIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSY 148
Cdd:PRK10510  112 NNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVDASRIRTQGM 191

                          90       100
                  ....*....|....*....|
gi 1785622599 149 GKEKPAVLGHDEAAYSKNRR 168
Cdd:PRK10510  192 GPANPIASNSTAEGKAQNRR 211
PRK09967 PRK09967
OmpA family protein;
71-172 8.16e-07

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 46.51  E-value: 8.16e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785622599  71 VYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAV-KMYLQGKGVSADQISIVSYG 149
Cdd:PRK09967   54 ILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVaDAWAMGGQIPRSNLTTQGLG 133

                          90       100
                  ....*....|....*....|...
gi 1785622599 150 KEKPAVLGHDEAAYSKNRRAVLV 172
Cdd:PRK09967  134 KKYPIASNKTAQGRAENRRVAVV 156
PRK09039 PRK09039
peptidoglycan -binding protein;
105-168 1.44e-06

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 46.88  E-value: 1.44e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1785622599 105 VEGHADER---GTPEY--NISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRR 168
Cdd:PRK09039  267 VDGHTDNVplsGTGRFrdNWELSSARAISVVKFLIALGVPADRLAAAGFGEFQPLDPGDTPEARARNRR 335
motB PRK07734
flagellar motor protein MotB; Reviewed
 71-168 1.47e-05

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 43.58  E-value: 1.47e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785622599  71 VYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADErgTP------EYNISLGERRA-NAVKMYLQGKGVSADQI 143
Cdd:PRK07734  144 ILFDSGKADVRLEDLPLAKEISNLLVSNPPRNITISGHTDN--VPianaqfASNWELSVMRAvNFMQVLLENKELDPEKF 221

                          90       100
                  ....*....|....*....|....*
gi 1785622599 144 SIVSYGKEKPAVLGHDEAAYSKNRR 168
Cdd:PRK07734  222 SAKGYGEYKPIASNDTAEGRAKNRR 246
PRK06925 PRK06925
flagellar motor protein MotB;
71-172 1.89e-05

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 43.21  E-value: 1.89e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785622599  71 VYFDLDKYDIRSDFAQMLDAHANFLRSNPSyKVTVEGHADERGTPEY----NISLGERRANAVKMYLQGK-GVSADQISI 145
Cdd:PRK06925  120 VLFETGEADILKQAEPFLHKIGVLLSTIPN-DIKVEGHTDSRPISTYrypsNWELSAARASSVIRYFTSKeKLDSSRFIA 198

                          90       100
                  ....*....|....*....|....*..
gi 1785622599 146 VSYGKEKPAVLGHDEAAYSKNRRAVLV 172
Cdd:PRK06925  199 VGYADTKPVVPNTTEENMQENRRVEIV 225
motB PRK08457
flagellar motor protein MotB; Reviewed
 99-170 3.07e-05

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 42.78  E-value: 3.07e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1785622599  99 PSYKVTVEGHAD--ERGTPEY--NISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRRAV 170
Cdd:PRK08457  154 KQVKINVRGYTDnsPLNKSRYkdHYELAAARAYNVMKVLIQYGINPNRLSFSSYGSNNPIAPNDSLENRLKNNRVE 229
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 73-171 1.16e-04

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 41.20  E-value: 1.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785622599  73 FDLDKYDIRSDFAQMLDAHANFLRSNPSyKVTVEGHADERgtPEYNISL-------GERRANAVKMYLQGKGVSADQISI 145
Cdd:PRK06742  119 FDTGDANVKPEAKEIISQLVGFFQSVPN-PIVVEGHTDSR--PIHNDKFpsnwelsSARAANMIHHLIEVYNVDDKRLAA 195

                          90       100
                  ....*....|....*....|....*.
gi 1785622599 146 VSYGKEKPAVLGHDEAAYSKNRRAVL 171
Cdd:PRK06742  196 VGYADTKPVVPNDSPQNWEKNRRVVI 221
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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