|
Name |
Accession |
Description |
Interval |
E-value |
| T7_EssCb_Firm |
TIGR03928 |
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, ... |
196-1479 |
0e+00 |
|
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, or longer subunit, of the Firmicutes type VII secretion protein EssC. This protein (homologous to EccC in Actinobacteria) and the WXG100 target proteins are the only homologous parts of type VII secretion between Firmicutes and Actinobacteria. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274860 [Multi-domain] Cd Length: 1296 Bit Score: 1806.88 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 196 DDYNTYHRSPRIIHREPTDDIKIERPPQPIQKNNTVIWRSIIPPLVMIALTVVIFLVRPIGIYILMMIGMSTVTIVFGIT 275
Cdd:TIGR03928 1 KDYPDYHRSPRIIYEEPTDKVKISKPPQEPDKPKRGLLRIILPPLVMIAVTVLISIFQPRGIFIIASIAMSLVTIIFSTT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 276 TYFSEKKKYNKDVEKREKDYKAYLDNKSKEINKAIKAQRFSLNYHYPTVAEIKDIVETKAPRIYEKTSHHHDFLHYKLGI 355
Cdd:TIGR03928 81 TYFREKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRHVLHYHNPSVEELKEMVENVNSRIWEKTPEHHDFLHVRLGT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 356 ANVEKSFKLDYQEEEFNQRRDELFDDAKELYEFYTDVEQAPLINDLNHGPIAYIGARHLILEELEKMLIQLSTFHSYHDL 435
Cdd:TIGR03928 161 GNVPSSFEIKFPEEEFSQRKDELLDEAQELKEKYNTIENVPIVLDLSNGPIGYVGKRSLVLEELQNLVGQLAFFHSYHDV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 436 EFLFVTREDEVETLKWARWLPHMTLRGQNIRGFVYNQRTRDQILTSIYSMIKERIQAVrERSRSNEQIIFTPQLVFVITD 515
Cdd:TIGR03928 241 QFVTIFPEEEKKKWEWMRWLPHFWLRDINVRGFVYNERTRDQLLNSLYQILKERKLAL-DDANSKEKKRFSPHYVFLITD 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 516 MSLIIDHVILEYVNQDLSEYGISLIFVEDVIESLPEHVDTIIDIKSRTEGELITKEKELVQLKFTPENIDNVDKEYIARR 595
Cdd:TIGR03928 320 RKLILDHVIMEYLNEDPSELGISLIFVQDVMESLPENVKTVIDIKNRNEGEIVLEEGELVEKSFTPDHLDNEDLEEYSRT 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 596 LANLIHVEHLKNAIPDSITFLEMYNVKEVDQLDVVNRWRQNETYKTMAVPLGVRGKDDILSLNLHEKAHGPHGLVAGTTG 675
Cdd:TIGR03928 400 LAPLNHLQNLKNSIPESVTFLEMYGVKKVEELNIQERWAKNETYKSLAVPIGLRGKDDIVYLNLHEKAHGPHGLVAGTTG 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 676 SGKSEIIQSYILSLAINFHPHEVAFLLIDYKGGGMANLFKDLVHLVGTITNLDGDEAMRALTSIKAELRKRQRLFGEHDV 755
Cdd:TIGR03928 480 SGKSEILQTYILSLAVNFHPHEVAFLLIDYKGGGMANLFKNLPHLLGTITNLDGAQSMRALASIKAELKKRQRLFGENNV 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 756 NHINQYHKLFKEGVATEPMPHLFIISDEFAELKSEQPDFMKELVSTARIGRSLGIHLILATQKPSGVVDDQIWSNSKFKL 835
Cdd:TIGR03928 560 NHINQYQKLYKQGKAKEPMPHLFLISDEFAELKSEQPEFMKELVSTARIGRSLGVHLILATQKPSGVVDDQIWSNSRFKL 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 836 ALKVQDRQDSNEILKTPDAADITLPGRAYLQVGNNEIYELFQSAWSGATYDIEGDKLEVEDktIYMINDYGQLQAINKDL 915
Cdd:TIGR03928 640 ALKVQDASDSNEILKTPDAAEITVPGRAYLQVGNNEVYELFQSAWSGAPYDPDKDKKEEED--IYMINDLGQYELLNEDL 717
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 916 SGLED-EETKENQTELEAVIDHIESITTRLEIEEVKRPWLPPLPENVYQEDLVETDFRKLWSDDAKEVELTLGLKDVPEE 994
Cdd:TIGR03928 718 SGLKRkKEIKEVPTELEAVIDEIQAYTEELNIEALPSPWLPPLEEKIYLDDLHAVEFDKLWSKPKEPLQATIGLLDDPEL 797
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 995 QYQGPMVLQLKKAGHIALIGSPGYGRTTFLHNIIFDVARHHRPDQAHMYLFDFGTNGLMPVTDIPHVADYFTVDQEDKIA 1074
Cdd:TIGR03928 798 QSQEPLTLDLSKDGHLAIFGSPGYGKSTFLQTLIMSLARQHSPEQLHFYLFDFGTNGLLPLKKLPHVADYFTLDEEEKIE 877
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 1075 KAIRKIHDIISERKRLLSQERVVNIEQYNKETGNSIPNVFLIIDNYDTVKESPFMEEYEEMMSKVTREGLALGVYIVLSG 1154
Cdd:TIGR03928 878 KLIRRIKKEIDRRKKLFSEYGVASISMYNKASGEKLPQIVIIIDNYDAVKEEPFYEDFEELLIQLAREGASLGIYLVMTA 957
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 1155 SRSSAIKSAIFTNIKTRVALYLFENNELTNIIGSYKKGVKDVKGRAAINDDNFTQFQIAQPFELAEGQTYNERIKNEVAQ 1234
Cdd:TIGR03928 958 GRQNAVRMPLMNNIKTKIALYLIDKSEYRSIVGRTKFTIEEIPGRGLIKKDEPTLFQTALPVKGEDDLEVIENIKAEIQK 1037
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 1235 MKEFYVGDYPKHIPMMPDKVLMEDIQETYDLEKIIhEEHKLPLGLDFEDVELVSLDLTLPSILT--ARTPNDLEIVNNRV 1312
Cdd:TIGR03928 1038 MNEAWTGERPKPIPMVPEELSLEEFRERYEVRKIL-EEGSIPIGLDEETVEPVYIDLTENPHLLivGESDDGKTNVLKSL 1116
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 1313 LDGMSKLkESVTTILVD-ADENMSD--KASIVNSYYASSEDLQLIKQGFIVEIKKR---LNSERSKESVKIVF------I 1380
Cdd:TIGR03928 1117 LKTLAKQ-EKEKIGLIDsIDRGLLAyrDLKEVATYIEEKEDLKEILAELKEEIELReaaYKEALQNETGEPAFkpilliI 1195
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 1381 NNLKAFISITGLNEKDI-RYILSEGPKVNVYTIISSMYNDILGTFDRESKLARQiINQAVIVTRLYDQEFLQAKITNREP 1459
Cdd:TIGR03928 1196 DDLEDFIQRTDLEIQDIlALIMKNGKKLGIHFIVAGTHSELSKSYDGVPKEIKQ-LRTGILGMRKSDQSFFKLPFTRSEK 1274
|
1290 1300
....*....|....*....|
gi 616691194 1460 LLKPYEMYYFNKNEHIKIKL 1479
Cdd:TIGR03928 1275 ELEPGEGYFVVNGKYQKIKI 1294
|
|
| FtsK_SpoIIIE |
pfam01580 |
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from ... |
644-820 |
1.16e-31 |
|
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE, which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Pssm-ID: 279863 [Multi-domain] Cd Length: 219 Bit Score: 124.03 E-value: 1.16e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 644 VPLGVRGKDDILSLNLheKAHGPHGLVAGTTGSGKSEIIQSYILSLAINFHPHEVAFLLIDYKGGGMANLFkDLVHLVGT 723
Cdd:pfam01580 19 IALGKDISGNPEVFDL--KKMPVHLLIAGATGSGKSVALNTLILSLAYMHTPEEVQLYCIDPKMGELSAYE-DIPHLLSV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 724 ITNLDGDEAMRALTSIKAELRKRQRLFGEHDVNHINQYHKLFKE----------------------GVATEPMPHLFIIS 781
Cdd:pfam01580 96 PVATDPKRALRALEWLVDEMERRYALFRALGVRSIAGYNGEIAEdpldgfgdvflviygvhvmctaGRWLEILPYLVVIV 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 616691194 782 DEFAELKSEQPDFMKELVST-----ARIGRSLGIHLILATQKPS 820
Cdd:pfam01580 176 DERAELRLAAPKDSEMRVEDaivrlAQKGRAAGIHLLLATQRPS 219
|
|
| FtsK_SpoIIIE_N |
pfam12538 |
DNA transporter; This domain family is found in bacteria, and is typically between 107 and 121 ... |
3-109 |
1.58e-29 |
|
DNA transporter; This domain family is found in bacteria, and is typically between 107 and 121 amino acids in length. The family is found in association with pfam01580. The FtsK/SpoIIIE family of DNA transporters are responsible for translocating missegregated chromosomes after the completion of cell division.
Pssm-ID: 372173 Cd Length: 115 Bit Score: 114.02 E-value: 1.58e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 3 KLIIKYNKQLKMLNLRDGKTYTISEDERADITLKSLGEVIHLEQNNQGTWQANHT--------SINKVLVRKGDLDDITL 74
Cdd:pfam12538 1 LLWVFYDDQYQKLNLDDLKTVTIGNDEEHDVTIPSLEGVIELKWDEDGGQYLVYQggeglqtlEINKSFEVKEDGKDLTL 80
|
90 100 110
....*....|....*....|....*....|....*
gi 616691194 75 QLYTEADYASFAYPSIQDTMTIGPNAYDDMVIQSL 109
Cdd:pfam12538 81 ILVGEAPSTSVYYIGNRDEITISSEEYADIVLQST 115
|
|
| FtsK |
COG1674 |
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, ... |
666-824 |
1.42e-25 |
|
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441280 [Multi-domain] Cd Length: 611 Bit Score: 113.87 E-value: 1.42e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 666 PHGLVAGTTGSGKSEIIQSYILSLAINFHPHEVAFLLIDYKgggMA--NLFKDLVHLVG-TITnlDGDEAMRALTSIKAE 742
Cdd:COG1674 282 PHLLIAGATGSGKSVCINAMILSLLYKATPDEVRLILIDPK---MVelSVYNGIPHLLTpVVT--DPKKAANALKWAVRE 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 743 LRKRQRLFGEHDVNHINQYHKLFKEGVAT-------EPMPHLFIISDEFAELkseqpdfM----KElV--STARI---GR 806
Cdd:COG1674 357 MERRYKLFAKAGVRNIAGYNEKVREAKAKgeeeeglEPLPYIVVIIDELADL-------MmvagKE-VeeAIARLaqkAR 428
|
170
....*....|....*...
gi 616691194 807 SLGIHLILATQKPSgvVD 824
Cdd:COG1674 429 AAGIHLILATQRPS--VD 444
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
627-849 |
1.00e-19 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 96.31 E-value: 1.00e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 627 LDVVNRWRQ---------NETYKTMAVPLG-VRGKDDILSLNLHEKAHGPHGLVAGTTGSGKSEIIQSYILSLAINFHPH 696
Cdd:PRK10263 962 LELPNKKRQtvylrevldNAKFRDNPSPLTvVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPE 1041
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 697 EVAFLLIDYKgggMANL--FKDLVHLVGTITNlDGDEAMRALTSIKAELRKRQRLFGEHDVNHINQYHKLFKEGV----- 769
Cdd:PRK10263 1042 DVRFIMIDPK---MLELsvYEGIPHLLTEVVT-DMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADrmmrp 1117
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 770 -----------------ATEPMPHLFIISDEFAELKSEQPDFMKELVST-ARIGRSLGIHLILATQKPS-GVVDDQIWSN 830
Cdd:PRK10263 1118 ipdpywkpgdsmdaqhpVLKKEPYIVVLVDEFADLMMTVGKKVEELIARlAQKARAAGIHLVLATQRPSvDVITGLIKAN 1197
|
250
....*....|....*....
gi 616691194 831 SKFKLALKVQDRQDSNEIL 849
Cdd:PRK10263 1198 IPTRIAFTVSSKIDSRTIL 1216
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
667-837 |
2.54e-05 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 45.67 E-value: 2.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 667 HGLVAGTTGSGKSEiiqsYILSLAINFHPHEVAFLLIDYKGggmaNLFkdlvhLVGTitnlDGDEAMRALTSIkaelrkr 746
Cdd:cd01127 1 NTLVLGTTGSGKTT----SIVIPLLDQAARGGSVIITDPKG----ELF-----LVIP----DRDDSFAALRAL------- 56
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 747 qrLFgeHDVNHINQYHKLFKEGVATEPmphLFIISDEFAELKSeqPDFMKELVSTariGRSLGIHLILATQ------KPS 820
Cdd:cd01127 57 --FF--NQLFRALTELASLSPGRLPRR---VWFILDEFANLGR--IPNLPNLLAT---GRKRGISVVLILQslaqleAVY 124
|
170
....*....|....*...
gi 616691194 821 GVVDDQ-IWSNSKFKLAL 837
Cdd:cd01127 125 GKDGAQtILGNCNTKLYL 142
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| T7_EssCb_Firm |
TIGR03928 |
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, ... |
196-1479 |
0e+00 |
|
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, or longer subunit, of the Firmicutes type VII secretion protein EssC. This protein (homologous to EccC in Actinobacteria) and the WXG100 target proteins are the only homologous parts of type VII secretion between Firmicutes and Actinobacteria. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274860 [Multi-domain] Cd Length: 1296 Bit Score: 1806.88 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 196 DDYNTYHRSPRIIHREPTDDIKIERPPQPIQKNNTVIWRSIIPPLVMIALTVVIFLVRPIGIYILMMIGMSTVTIVFGIT 275
Cdd:TIGR03928 1 KDYPDYHRSPRIIYEEPTDKVKISKPPQEPDKPKRGLLRIILPPLVMIAVTVLISIFQPRGIFIIASIAMSLVTIIFSTT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 276 TYFSEKKKYNKDVEKREKDYKAYLDNKSKEINKAIKAQRFSLNYHYPTVAEIKDIVETKAPRIYEKTSHHHDFLHYKLGI 355
Cdd:TIGR03928 81 TYFREKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRHVLHYHNPSVEELKEMVENVNSRIWEKTPEHHDFLHVRLGT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 356 ANVEKSFKLDYQEEEFNQRRDELFDDAKELYEFYTDVEQAPLINDLNHGPIAYIGARHLILEELEKMLIQLSTFHSYHDL 435
Cdd:TIGR03928 161 GNVPSSFEIKFPEEEFSQRKDELLDEAQELKEKYNTIENVPIVLDLSNGPIGYVGKRSLVLEELQNLVGQLAFFHSYHDV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 436 EFLFVTREDEVETLKWARWLPHMTLRGQNIRGFVYNQRTRDQILTSIYSMIKERIQAVrERSRSNEQIIFTPQLVFVITD 515
Cdd:TIGR03928 241 QFVTIFPEEEKKKWEWMRWLPHFWLRDINVRGFVYNERTRDQLLNSLYQILKERKLAL-DDANSKEKKRFSPHYVFLITD 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 516 MSLIIDHVILEYVNQDLSEYGISLIFVEDVIESLPEHVDTIIDIKSRTEGELITKEKELVQLKFTPENIDNVDKEYIARR 595
Cdd:TIGR03928 320 RKLILDHVIMEYLNEDPSELGISLIFVQDVMESLPENVKTVIDIKNRNEGEIVLEEGELVEKSFTPDHLDNEDLEEYSRT 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 596 LANLIHVEHLKNAIPDSITFLEMYNVKEVDQLDVVNRWRQNETYKTMAVPLGVRGKDDILSLNLHEKAHGPHGLVAGTTG 675
Cdd:TIGR03928 400 LAPLNHLQNLKNSIPESVTFLEMYGVKKVEELNIQERWAKNETYKSLAVPIGLRGKDDIVYLNLHEKAHGPHGLVAGTTG 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 676 SGKSEIIQSYILSLAINFHPHEVAFLLIDYKGGGMANLFKDLVHLVGTITNLDGDEAMRALTSIKAELRKRQRLFGEHDV 755
Cdd:TIGR03928 480 SGKSEILQTYILSLAVNFHPHEVAFLLIDYKGGGMANLFKNLPHLLGTITNLDGAQSMRALASIKAELKKRQRLFGENNV 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 756 NHINQYHKLFKEGVATEPMPHLFIISDEFAELKSEQPDFMKELVSTARIGRSLGIHLILATQKPSGVVDDQIWSNSKFKL 835
Cdd:TIGR03928 560 NHINQYQKLYKQGKAKEPMPHLFLISDEFAELKSEQPEFMKELVSTARIGRSLGVHLILATQKPSGVVDDQIWSNSRFKL 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 836 ALKVQDRQDSNEILKTPDAADITLPGRAYLQVGNNEIYELFQSAWSGATYDIEGDKLEVEDktIYMINDYGQLQAINKDL 915
Cdd:TIGR03928 640 ALKVQDASDSNEILKTPDAAEITVPGRAYLQVGNNEVYELFQSAWSGAPYDPDKDKKEEED--IYMINDLGQYELLNEDL 717
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 916 SGLED-EETKENQTELEAVIDHIESITTRLEIEEVKRPWLPPLPENVYQEDLVETDFRKLWSDDAKEVELTLGLKDVPEE 994
Cdd:TIGR03928 718 SGLKRkKEIKEVPTELEAVIDEIQAYTEELNIEALPSPWLPPLEEKIYLDDLHAVEFDKLWSKPKEPLQATIGLLDDPEL 797
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 995 QYQGPMVLQLKKAGHIALIGSPGYGRTTFLHNIIFDVARHHRPDQAHMYLFDFGTNGLMPVTDIPHVADYFTVDQEDKIA 1074
Cdd:TIGR03928 798 QSQEPLTLDLSKDGHLAIFGSPGYGKSTFLQTLIMSLARQHSPEQLHFYLFDFGTNGLLPLKKLPHVADYFTLDEEEKIE 877
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 1075 KAIRKIHDIISERKRLLSQERVVNIEQYNKETGNSIPNVFLIIDNYDTVKESPFMEEYEEMMSKVTREGLALGVYIVLSG 1154
Cdd:TIGR03928 878 KLIRRIKKEIDRRKKLFSEYGVASISMYNKASGEKLPQIVIIIDNYDAVKEEPFYEDFEELLIQLAREGASLGIYLVMTA 957
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 1155 SRSSAIKSAIFTNIKTRVALYLFENNELTNIIGSYKKGVKDVKGRAAINDDNFTQFQIAQPFELAEGQTYNERIKNEVAQ 1234
Cdd:TIGR03928 958 GRQNAVRMPLMNNIKTKIALYLIDKSEYRSIVGRTKFTIEEIPGRGLIKKDEPTLFQTALPVKGEDDLEVIENIKAEIQK 1037
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 1235 MKEFYVGDYPKHIPMMPDKVLMEDIQETYDLEKIIhEEHKLPLGLDFEDVELVSLDLTLPSILT--ARTPNDLEIVNNRV 1312
Cdd:TIGR03928 1038 MNEAWTGERPKPIPMVPEELSLEEFRERYEVRKIL-EEGSIPIGLDEETVEPVYIDLTENPHLLivGESDDGKTNVLKSL 1116
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 1313 LDGMSKLkESVTTILVD-ADENMSD--KASIVNSYYASSEDLQLIKQGFIVEIKKR---LNSERSKESVKIVF------I 1380
Cdd:TIGR03928 1117 LKTLAKQ-EKEKIGLIDsIDRGLLAyrDLKEVATYIEEKEDLKEILAELKEEIELReaaYKEALQNETGEPAFkpilliI 1195
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 1381 NNLKAFISITGLNEKDI-RYILSEGPKVNVYTIISSMYNDILGTFDRESKLARQiINQAVIVTRLYDQEFLQAKITNREP 1459
Cdd:TIGR03928 1196 DDLEDFIQRTDLEIQDIlALIMKNGKKLGIHFIVAGTHSELSKSYDGVPKEIKQ-LRTGILGMRKSDQSFFKLPFTRSEK 1274
|
1290 1300
....*....|....*....|
gi 616691194 1460 LLKPYEMYYFNKNEHIKIKL 1479
Cdd:TIGR03928 1275 ELEPGEGYFVVNGKYQKIKI 1294
|
|
| T7SS_EccC_a |
TIGR03924 |
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit ... |
232-885 |
8.37e-81 |
|
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274858 [Multi-domain] Cd Length: 658 Bit Score: 280.71 E-value: 8.37e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 232 IWRSIIPPLVMIAL--TVVIFLVR------PIGIYILMMIGMSTVTIVFGITtyfSEKKKYNKDVEKREKDYKAYLDNKS 303
Cdd:TIGR03924 3 LLQKLLPVVMVVAVvgMVVMMFASggrqrnPMFLIFPLMMLVSMLGMLAGGR---GGGGKKTPELDEDRRDYLRYLDQLR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 304 KEINKAIKAQRFSLNYHYPTVAEIKDIVETkaPRIYEKTSHHHDFLHYKLGIANVEKSFKLDYQEeefNQRRDELfdD-- 381
Cdd:TIGR03924 80 REVRETAAAQRAALEWRHPDPDTLWALVGT--PRMWERRPGDPDFLEVRVGVGVQPLATRLVVPE---TGPVEDL--Epv 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 382 -AKELYEF---YTDVEQAPLINDLN-HGPIAYIGARHLILEELEKMLIQLSTFHSYHDLEFLFVTREDEVEtLKWARWLP 456
Cdd:TIGR03924 153 tAVALRRFlraHSTVPDLPVAVSLRgFARISLVGDRDQARALARAMLCQLAVFHGPDDVGIAVVTSDPDRD-WDWLKWLP 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 457 HM---TLR-GQNIRGFVYNqrTRDQILTSIYSMIKERIQAVRERSRSneqiifTPQLVfvitdmsLIIDHVILEYVNQDL 532
Cdd:TIGR03924 232 HNqhpTRFdAAGPARLVYT--SLAELEAALAELLADRGRFSPDDAAS------LPHLV-------VVVDGGDLPGWEDLI 296
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 533 SEYGI---SLIFVEDVIESLPEHVDTIIDIksrTEGELITKEKELVQLKFT-PENIDNVDKEYIARRLANLihveHLKNA 608
Cdd:TIGR03924 297 GESGLdgvTVIDLGGSLPGLPDRRGLRLVV---EADRLDARTADGVEEFGVaPDQLSIAEAEALARRLARW----RAATA 369
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 609 IPD------SITFLEMYNVKEVDQLDVVNRWRQNETYKTMAVPLGVRGKDDILSLNLHEKAH---GPHGLVAGTTGSGKS 679
Cdd:TIGR03924 370 GTVdapltgARDLLELLGIGDPATLDVDRLWRPRPGRDRLRVPIGVGDDGEPVELDLKESAEggmGPHGLCIGATGSGKS 449
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 680 EIIQSYILSLAINFHPHEVAFLLIDYKGGGMANLFKDLVHLVGTITNLdGDEA-----MRAltSIKAELRKRQRLFGEH- 753
Cdd:TIGR03924 450 ELLRTLVLGLAATHSPEQLNLVLVDFKGGATFLGLEGLPHVSAVITNL-ADEAplvdrMQD--ALAGEMNRRQELLRAAg 526
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 754 DVNHINQYHKLFKEGVATEPMPHLFIISDEFAELKSEQPDFMKELVSTARIGRSLGIHLILATQKPSGVVDDQIWSNSKF 833
Cdd:TIGR03924 527 NFANVAEYEKARAAGADLPPLPALFVVVDEFSELLSQHPDFADLFVAIGRLGRSLGVHLLLASQRLDEGRLRGLESHLSY 606
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 616691194 834 KLALKVQDRQDSNEILKTPDAADI-TLPGRAYLQVGNNEIyELFQSAWSGATY 885
Cdd:TIGR03924 607 RIGLKTFSASESRAVLGVPDAYHLpSTPGAGYLKVDTAEP-VRFRAAYVSGPY 658
|
|
| T7SS_EccC_b |
TIGR03925 |
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit ... |
928-1291 |
2.35e-38 |
|
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274859 [Multi-domain] Cd Length: 566 Bit Score: 152.45 E-value: 2.35e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 928 TELEAVIDHIESITTRleieeVKRPWLPPLPENVYQEDLVETDFRKLWSDDAKEVE---LTLGLKDVPEEQYQGPMVLQL 1004
Cdd:TIGR03925 1 TVLDVVVDRLAGQGPP-----AHQVWLPPLPEPPALDDLLPRLDVDPWRVDYGQRGrltVPVGIVDRPFEQRQDPLVVDL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 1005 KKA-GHIALIGSPGYGRTTFLHNIIFDVARHHRPDQAHMYLFDFGTNGLMPVTDIPHVADYFTVDQEDKIAKAIRKIHDI 1083
Cdd:TIGR03925 76 SGAaGHVAIVGAPQSGKSTALRTLILALALTHTPEEVQFYCLDFGGGGLASLADLPHVGGVAGRLDPERVRRTVAEVEGL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 1084 ISERKRLLSQERVVNIEQY------NKETGNSIPNVFLIIDNYDTvkespFMEEYEEMMSKVT---REGLALGVYIVLSG 1154
Cdd:TIGR03925 156 LRRRERLFRTHGIDSMAQYrarraaGRLPEDPFGDVFLVIDGWGT-----LRQDFEDLEDKVTdlaARGLAYGVHVVLTA 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 1155 SRSSAIKSAIFTNIKTRVALYLFENNEltNIIGSyKKGVK---DVKGRaAINDDNFTqFQIAQPFELAEGQTYNERIKNE 1231
Cdd:TIGR03925 231 SRWSEIRPALRDLIGTRIELRLGDPMD--SEIDR-RAAARvpaGRPGR-GLTPDGLH-MLIALPRLDGIASVDDLGTRGL 305
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 1232 VAQMKEFYVGDYPKHIPMMPDKVLMEDIQETYDlekiiHEEHKLPLGLDFEDVELVSLDL 1291
Cdd:TIGR03925 306 VAVIRDVWGGPPAPPVRLLPARLPLSALPAGGG-----APRLRVPLGLGESDLAPVYVDF 360
|
|
| T7SS_EccC_b |
TIGR03925 |
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit ... |
624-1123 |
2.57e-34 |
|
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274859 [Multi-domain] Cd Length: 566 Bit Score: 140.51 E-value: 2.57e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 624 VDQLDVVNRWRQNETYKTMAVPLGV-----RGKDDILSLNLHekAHGPHGLVAGTTGSGKSEIIQSYILSLAINFHPHEV 698
Cdd:TIGR03925 35 LPRLDVDPWRVDYGQRGRLTVPVGIvdrpfEQRQDPLVVDLS--GAAGHVAIVGAPQSGKSTALRTLILALALTHTPEEV 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 699 AFLLIDYKGGGMANLfKDLVHLVGTITNLDGDEAMRALTSIKAELRKRQRLFGEHDVNHINQYHKL-FKEGVATEPMPHL 777
Cdd:TIGR03925 113 QFYCLDFGGGGLASL-ADLPHVGGVAGRLDPERVRRTVAEVEGLLRRRERLFRTHGIDSMAQYRARrAAGRLPEDPFGDV 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 778 FIISDEFAELKSEQPDFMKELVSTARIGRSLGIHLILATQKPSGV---VDDQIWSnskfKLALKVQDRQDSnEILKTPdA 854
Cdd:TIGR03925 192 FLVIDGWGTLRQDFEDLEDKVTDLAARGLAYGVHVVLTASRWSEIrpaLRDLIGT----RIELRLGDPMDS-EIDRRA-A 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 855 ADIT--LPGRaylqvgnneiyelfqsawsGATydiegdklevEDKTIYMINdygqlqainkdLSGLEDEETKENQTELEA 932
Cdd:TIGR03925 266 ARVPagRPGR-------------------GLT----------PDGLHMLIA-----------LPRLDGIASVDDLGTRGL 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 933 VidhiESITTRLEIEEVkrPWLPPLPENVYQEDLVEtdfrklwSDDAKEVELTLGLkdvpEEQYQGPMVLQLKKAGHIAL 1012
Cdd:TIGR03925 306 V----AVIRDVWGGPPA--PPVRLLPARLPLSALPA-------GGGAPRLRVPLGL----GESDLAPVYVDFAESPHLLI 368
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 1013 IGSPGYGRTTFLHNIIFDVARHHRPDQAHMYLFDFGTnGLMPVTDIPHVADYfTVDQeDKIAKAIRKIHDIIseRKRL-- 1090
Cdd:TIGR03925 369 FGDSESGKTTLLRTIARGIVRRYSPDQARLVVVDYRR-TLLGAVPEDYLAGY-AATS-AALTELIAALAALL--ERRLpg 443
|
490 500 510
....*....|....*....|....*....|....*
gi 616691194 1091 --LSQERVVNIEQYnkeTGnsiPNVFLIIDNYDTV 1123
Cdd:TIGR03925 444 pdVTPQQLRARSWW---SG---PEIYVVVDDYDLV 472
|
|
| FtsK_SpoIIIE |
pfam01580 |
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from ... |
644-820 |
1.16e-31 |
|
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE, which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Pssm-ID: 279863 [Multi-domain] Cd Length: 219 Bit Score: 124.03 E-value: 1.16e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 644 VPLGVRGKDDILSLNLheKAHGPHGLVAGTTGSGKSEIIQSYILSLAINFHPHEVAFLLIDYKGGGMANLFkDLVHLVGT 723
Cdd:pfam01580 19 IALGKDISGNPEVFDL--KKMPVHLLIAGATGSGKSVALNTLILSLAYMHTPEEVQLYCIDPKMGELSAYE-DIPHLLSV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 724 ITNLDGDEAMRALTSIKAELRKRQRLFGEHDVNHINQYHKLFKE----------------------GVATEPMPHLFIIS 781
Cdd:pfam01580 96 PVATDPKRALRALEWLVDEMERRYALFRALGVRSIAGYNGEIAEdpldgfgdvflviygvhvmctaGRWLEILPYLVVIV 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 616691194 782 DEFAELKSEQPDFMKELVST-----ARIGRSLGIHLILATQKPS 820
Cdd:pfam01580 176 DERAELRLAAPKDSEMRVEDaivrlAQKGRAAGIHLLLATQRPS 219
|
|
| FtsK_SpoIIIE_N |
pfam12538 |
DNA transporter; This domain family is found in bacteria, and is typically between 107 and 121 ... |
3-109 |
1.58e-29 |
|
DNA transporter; This domain family is found in bacteria, and is typically between 107 and 121 amino acids in length. The family is found in association with pfam01580. The FtsK/SpoIIIE family of DNA transporters are responsible for translocating missegregated chromosomes after the completion of cell division.
Pssm-ID: 372173 Cd Length: 115 Bit Score: 114.02 E-value: 1.58e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 3 KLIIKYNKQLKMLNLRDGKTYTISEDERADITLKSLGEVIHLEQNNQGTWQANHT--------SINKVLVRKGDLDDITL 74
Cdd:pfam12538 1 LLWVFYDDQYQKLNLDDLKTVTIGNDEEHDVTIPSLEGVIELKWDEDGGQYLVYQggeglqtlEINKSFEVKEDGKDLTL 80
|
90 100 110
....*....|....*....|....*....|....*
gi 616691194 75 QLYTEADYASFAYPSIQDTMTIGPNAYDDMVIQSL 109
Cdd:pfam12538 81 ILVGEAPSTSVYYIGNRDEITISSEEYADIVLQST 115
|
|
| FtsK |
COG1674 |
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, ... |
666-824 |
1.42e-25 |
|
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441280 [Multi-domain] Cd Length: 611 Bit Score: 113.87 E-value: 1.42e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 666 PHGLVAGTTGSGKSEIIQSYILSLAINFHPHEVAFLLIDYKgggMA--NLFKDLVHLVG-TITnlDGDEAMRALTSIKAE 742
Cdd:COG1674 282 PHLLIAGATGSGKSVCINAMILSLLYKATPDEVRLILIDPK---MVelSVYNGIPHLLTpVVT--DPKKAANALKWAVRE 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 743 LRKRQRLFGEHDVNHINQYHKLFKEGVAT-------EPMPHLFIISDEFAELkseqpdfM----KElV--STARI---GR 806
Cdd:COG1674 357 MERRYKLFAKAGVRNIAGYNEKVREAKAKgeeeeglEPLPYIVVIIDELADL-------MmvagKE-VeeAIARLaqkAR 428
|
170
....*....|....*...
gi 616691194 807 SLGIHLILATQKPSgvVD 824
Cdd:COG1674 429 AAGIHLILATQRPS--VD 444
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
627-849 |
1.00e-19 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 96.31 E-value: 1.00e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 627 LDVVNRWRQ---------NETYKTMAVPLG-VRGKDDILSLNLHEKAHGPHGLVAGTTGSGKSEIIQSYILSLAINFHPH 696
Cdd:PRK10263 962 LELPNKKRQtvylrevldNAKFRDNPSPLTvVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPE 1041
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 697 EVAFLLIDYKgggMANL--FKDLVHLVGTITNlDGDEAMRALTSIKAELRKRQRLFGEHDVNHINQYHKLFKEGV----- 769
Cdd:PRK10263 1042 DVRFIMIDPK---MLELsvYEGIPHLLTEVVT-DMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADrmmrp 1117
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 770 -----------------ATEPMPHLFIISDEFAELKSEQPDFMKELVST-ARIGRSLGIHLILATQKPS-GVVDDQIWSN 830
Cdd:PRK10263 1118 ipdpywkpgdsmdaqhpVLKKEPYIVVLVDEFADLMMTVGKKVEELIARlAQKARAAGIHLVLATQRPSvDVITGLIKAN 1197
|
250
....*....|....*....
gi 616691194 831 SKFKLALKVQDRQDSNEIL 849
Cdd:PRK10263 1198 IPTRIAFTVSSKIDSRTIL 1216
|
|
| FtsK_SpoIIIE |
pfam01580 |
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from ... |
990-1127 |
1.90e-17 |
|
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE, which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Pssm-ID: 279863 [Multi-domain] Cd Length: 219 Bit Score: 82.81 E-value: 1.90e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 990 DVPEEQYQGPMVLQLKK-AGHIALIGSPGYGRTTFLHNIIFDVARHHRPDQAHMYLFDFGTNGLMPVTDIPHVADYFTVD 1068
Cdd:pfam01580 20 ALGKDISGNPEVFDLKKmPVHLLIAGATGSGKSVALNTLILSLAYMHTPEEVQLYCIDPKMGELSAYEDIPHLLSVPVAT 99
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 616691194 1069 QEDKIAKAIRKIHDIISERKRLLSQERVVNIEQYNKETGNSI----PNVFLIIDNYDTVKESP 1127
Cdd:pfam01580 100 DPKRALRALEWLVDEMERRYALFRALGVRSIAGYNGEIAEDPldgfGDVFLVIYGVHVMCTAG 162
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
944-1174 |
1.33e-08 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 59.71 E-value: 1.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 944 LEIEEVKRpwlpplpENVY-QEDLVETDFRklwsDDAKEVELTLGlKDVPEEqyqgPMVLQLKKAGHIALIGSPGYGRTT 1022
Cdd:PRK10263 962 LELPNKKR-------QTVYlREVLDNAKFR----DNPSPLTVVLG-KDIAGE----PVVADLAKMPHLLVAGTTGSGKSV 1025
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 1023 FLHNIIFDVARHHRPDQAHMYLFDFGTNGLMPVTDIPHVADYFTVDQEDKiAKAIRKIHDIISERKRLLSQERVVNIEQY 1102
Cdd:PRK10263 1026 GVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDA-ANALRWCVNEMERRYKLMSALGVRNLAGY 1104
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 1103 NKE------TGNSIPNVFLII-DNYDT----VKESPFM----EEY-----------EEMMSKVTREGLALGVYIVLSGSR 1156
Cdd:PRK10263 1105 NEKiaeadrMMRPIPDPYWKPgDSMDAqhpvLKKEPYIvvlvDEFadlmmtvgkkvEELIARLAQKARAAGIHLVLATQR 1184
|
250 260
....*....|....*....|
gi 616691194 1157 SS--AIKSAIFTNIKTRVAL 1174
Cdd:PRK10263 1185 PSvdVITGLIKANIPTRIAF 1204
|
|
| T7SS_EccC_b |
TIGR03925 |
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit ... |
641-815 |
1.38e-06 |
|
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274859 [Multi-domain] Cd Length: 566 Bit Score: 52.69 E-value: 1.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 641 TMAVPLGVRGKDdiLSLNLHEKAHGPHGLVAGTTGSGKSEIIQSYILSLAINFHPHEVAFLLIDYKGGGManlfkDLV-- 718
Cdd:TIGR03925 341 RLRVPLGLGESD--LAPVYVDFAESPHLLIFGDSESGKTTLLRTIARGIVRRYSPDQARLVVVDYRRTLL-----GAVpe 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 719 -HLVGTITNLDG-DEAMRALtsiKAELRKRqrlfgehdvnhinqyhkLFKEGVATEPM--------PHLFIISDEFAELK 788
Cdd:TIGR03925 414 dYLAGYAATSAAlTELIAAL---AALLERR-----------------LPGPDVTPQQLrarswwsgPEIYVVVDDYDLVA 473
|
170 180
....*....|....*....|....*..
gi 616691194 789 SEQPDFMKELVSTARIGRSLGIHLILA 815
Cdd:TIGR03925 474 TGSGNPLAPLVELLPHARDIGLHVVVA 500
|
|
| HerA |
COG0433 |
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase ... |
643-848 |
1.72e-06 |
|
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains [Replication, recombination and repair];
Pssm-ID: 440202 [Multi-domain] Cd Length: 388 Bit Score: 51.92 E-value: 1.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 643 AVPLG-VRGKDDILSLNLhEKAHGPHGLVAGTTGSGKSeiiqSYILSLAINFHPHEVAFLLIDYKG--GGMANL------ 713
Cdd:COG0433 25 GILIGkLLSPGVPVYLDL-DKLLNRHILILGATGSGKS----NTLQVLLEELSRAGVPVLVFDPHGeySGLAEPgaerad 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 714 ------------------------------------------------------------FKDLVHLVGTITNLDGDEAM 733
Cdd:COG0433 100 vgvfdpgagrplpinpwdlfataselgplllsrldlndtqrgvlrealrladdkglllldLKDLIALLEEGEELGEEYGN 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 734 RALTSIKA------ELRKRQRLFGEH-----------------DVNHINQ--------------YHKLFKEGVATEPMPH 776
Cdd:COG0433 180 VSAASAGAllrrleSLESADGLFGEPgldledllrtdgrvtviDLSGLPEelqstfvlwllrelFEARPEVGDADDRKLP 259
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 616691194 777 LFIISDEFAELKSEQPDFMKELVST-ARIGRSLGIHLILATQKPSGvVDDQIWSNSKFKLALKVQDRQDSNEI 848
Cdd:COG0433 260 LVLVIDEAHLLAPAAPSALLEILERiAREGRKFGVGLILATQRPSD-IDEDVLSQLGTQIILRLFNPRDQKAV 331
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
667-837 |
2.54e-05 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 45.67 E-value: 2.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 667 HGLVAGTTGSGKSEiiqsYILSLAINFHPHEVAFLLIDYKGggmaNLFkdlvhLVGTitnlDGDEAMRALTSIkaelrkr 746
Cdd:cd01127 1 NTLVLGTTGSGKTT----SIVIPLLDQAARGGSVIITDPKG----ELF-----LVIP----DRDDSFAALRAL------- 56
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 747 qrLFgeHDVNHINQYHKLFKEGVATEPmphLFIISDEFAELKSeqPDFMKELVSTariGRSLGIHLILATQ------KPS 820
Cdd:cd01127 57 --FF--NQLFRALTELASLSPGRLPRR---VWFILDEFANLGR--IPNLPNLLAT---GRKRGISVVLILQslaqleAVY 124
|
170
....*....|....*...
gi 616691194 821 GVVDDQ-IWSNSKFKLAL 837
Cdd:cd01127 125 GKDGAQtILGNCNTKLYL 142
|
|
| VirD4 |
COG3505 |
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, ... |
775-848 |
8.91e-05 |
|
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442728 [Multi-domain] Cd Length: 402 Bit Score: 46.52 E-value: 8.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 775 PHLFIIsDEFAELKseQPDFMKELVSTariGRSLGIHLILATQKPSGVVD-------DQIWSNSKFKLALKVQDRQDSNE 847
Cdd:COG3505 248 PVLLLL-DEFANLG--RLPSLETLLAT---GRGYGIRLVLILQSLAQLEAiygeegaETILGNCGTKIFLGVNDPETAEY 321
|
.
gi 616691194 848 I 848
Cdd:COG3505 322 L 322
|
|
| T7SS_EccC_a |
TIGR03924 |
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit ... |
999-1188 |
2.39e-04 |
|
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274858 [Multi-domain] Cd Length: 658 Bit Score: 45.73 E-value: 2.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 999 PMVLQLKKAG------HIALIGSPGYGRTTFLHNIIFDVARHHRPDQAHMYLFDF-GTNGLMPVTDIPHVADYFTvDQED 1071
Cdd:TIGR03924 421 PVELDLKESAeggmgpHGLCIGATGSGKSELLRTLVLGLAATHSPEQLNLVLVDFkGGATFLGLEGLPHVSAVIT-NLAD 499
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 1072 KIAKAIRkIHDIIS----ERKRLLSQE-RVVNIEQYNK--ETGNS---IPNVFLIIDnydtvkespfmeEYEEMMSK--- 1138
Cdd:TIGR03924 500 EAPLVDR-MQDALAgemnRRQELLRAAgNFANVAEYEKarAAGADlppLPALFVVVD------------EFSELLSQhpd 566
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 616691194 1139 -------VTREGLALGVYIVLSGSR--SSAIKsAIFTNIKTRVALYLFENNELTNIIGS 1188
Cdd:TIGR03924 567 fadlfvaIGRLGRSLGVHLLLASQRldEGRLR-GLESHLSYRIGLKTFSASESRAVLGV 624
|
|
| TraG-D_C |
pfam12696 |
TraM recognition site of TraD and TraG; This family includes both TraG and TraD as well as ... |
776-848 |
7.11e-04 |
|
TraM recognition site of TraD and TraG; This family includes both TraG and TraD as well as VirD4 proteins. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. This domain interacts with the relaxosome component TraM via the latter's tetramerization domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore.
Pssm-ID: 432726 [Multi-domain] Cd Length: 125 Bit Score: 41.10 E-value: 7.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616691194 776 HLFIISDEFAELKseQPDFMKELVSTariGRSLGIHLILATQKPSGVVD-------DQIWSNSKFKLALKVQDRQDSNEI 848
Cdd:pfam12696 1 PVLFVLDEFANLG--KIPDLEKLIST---GRSRGISLMLILQSIAQLEElygkdgaETILGNCNTKVFLGGGDEETAKYL 75
|
|
| |
