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Conserved domains on  [gi|616629320|gb|KAE28795|]
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hypothetical protein W605_01976 [Staphylococcus aureus VET0357R]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
COG5585 super family cl28039
Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1 [Mobilome: prophages, ...
1-28 3.16e-06

Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1 [Mobilome: prophages, transposons];


The actual alignment was detected with superfamily member COG5585:

Pssm-ID: 444324  Cd Length: 223  Bit Score: 46.71  E-value: 3.16e-06
                         10        20
                 ....*....|....*....|....*....
gi 616629320   1 MIPGVNAPPMHPWCRSTTVPH-VGSWRDK 28
Cdd:COG5585  187 AKIGVNAPPFHPNCRTTTVPYtFEDTEDE 215
 
Name Accession Description Interval E-value
COG5585 COG5585
Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1 [Mobilome: prophages, ...
1-28 3.16e-06

Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1 [Mobilome: prophages, transposons];


Pssm-ID: 444324  Cd Length: 223  Bit Score: 46.71  E-value: 3.16e-06
                         10        20
                 ....*....|....*....|....*....
gi 616629320   1 MIPGVNAPPMHPWCRSTTVPH-VGSWRDK 28
Cdd:COG5585  187 AKIGVNAPPFHPNCRTTTVPYtFEDTEDE 215
phageSPP1_gp7 TIGR01641
phage putative head morphogenesis protein, SPP1 gp7 family; This model describes a region of ...
1-22 6.08e-04

phage putative head morphogenesis protein, SPP1 gp7 family; This model describes a region of about 110 amino acids found exclusively in phage-related proteins, internally or toward the C-terminus. One member, gp7 of phage SPP1, appears involved in head morphogenesis. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 213641  Cd Length: 108  Bit Score: 38.13  E-value: 6.08e-04
                          10        20
                  ....*....|....*....|..
gi 616629320    1 MIPGVNAPPMHPWCRSTTVPHV 22
Cdd:TIGR01641  87 AVPGVNAPPLHPNCRCTLAPVP 108
 
Name Accession Description Interval E-value
COG5585 COG5585
Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1 [Mobilome: prophages, ...
1-28 3.16e-06

Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1 [Mobilome: prophages, transposons];


Pssm-ID: 444324  Cd Length: 223  Bit Score: 46.71  E-value: 3.16e-06
                         10        20
                 ....*....|....*....|....*....
gi 616629320   1 MIPGVNAPPMHPWCRSTTVPH-VGSWRDK 28
Cdd:COG5585  187 AKIGVNAPPFHPNCRTTTVPYtFEDTEDE 215
phageSPP1_gp7 TIGR01641
phage putative head morphogenesis protein, SPP1 gp7 family; This model describes a region of ...
1-22 6.08e-04

phage putative head morphogenesis protein, SPP1 gp7 family; This model describes a region of about 110 amino acids found exclusively in phage-related proteins, internally or toward the C-terminus. One member, gp7 of phage SPP1, appears involved in head morphogenesis. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 213641  Cd Length: 108  Bit Score: 38.13  E-value: 6.08e-04
                          10        20
                  ....*....|....*....|..
gi 616629320    1 MIPGVNAPPMHPWCRSTTVPHV 22
Cdd:TIGR01641  87 AVPGVNAPPLHPNCRCTLAPVP 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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