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Conserved domains on  [gi|616613806|gb|KAE13716|]
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hypothetical protein W598_02742 [Staphylococcus aureus VET0340R]

Protein Classification

AraC family transcriptional regulator( domain architecture ID 11454549)

AraC family transcriptional regulator controls the expression of genes with diverse biological functions including metabolism, stress response, and virulence

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YdeE COG3708
Predicted transcriptional regulator YdeE, contains AraC-type DNA-binding domain [Transcription] ...
 126-286 7.78e-37

Predicted transcriptional regulator YdeE, contains AraC-type DNA-binding domain [Transcription];


:

Pssm-ID: 442922  Cd Length: 157  Bit Score: 128.60  E-value: 7.78e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616613806 126 MKTRIVDLPKINIVGVKKRVRMQYEGVNNEIEELANSITNIQKEEMNNLQNiePKEIVNVSYDADEnfikEEGYLTHMIG 205
Cdd:COG3708    1 MEYRIVEKPAFKLVGLSARTSNSDEEANEEIPALWQRFLPEGLAEIPNLSN--PGGLYGVCTDYES----DEGEFDYLAG 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616613806 206 VITTE-NNISDQLDVINIDESKWIVFENEGKFPKVLQDTYAKIYSEWLPETEYKLANVPMFSFTKFNDSDSDNAYSEIWV 284
Cdd:COG3708   75 VEVSSfDEVPEGLETLEIPAGTYAVFTHKGPMPEALQETWQYIYSEWLPSSGYERADGPDFEVYDERDDPSPDSEVEIWI 154


                 ..
gi 616613806 285 AV 286
Cdd:COG3708  155 PI 156
HTH_ARAC super family cl33243
helix_turn_helix, arabinose operon control protein;
22-101 6.27e-12

helix_turn_helix, arabinose operon control protein;


The actual alignment was detected with superfamily member smart00342:

Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 60.26  E-value: 6.27e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616613806    22 DLNLYDIANFVGLPEQHYRNLFIFLTGIGLSEYIKKRKLYFANKDLLN-KESVTSVAIKYGY-SIDGFTKSFKDWSGYLP 99
Cdd:smart00342   1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDtDLSVTEIALRVGFsSQSYFSRAFKKLFGVTP 80


                   ..
gi 616613806   100 SQ 101
Cdd:smart00342  81 SE 82
 
Name Accession Description Interval E-value
YdeE COG3708
Predicted transcriptional regulator YdeE, contains AraC-type DNA-binding domain [Transcription] ...
 126-286 7.78e-37

Predicted transcriptional regulator YdeE, contains AraC-type DNA-binding domain [Transcription];


Pssm-ID: 442922  Cd Length: 157  Bit Score: 128.60  E-value: 7.78e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616613806 126 MKTRIVDLPKINIVGVKKRVRMQYEGVNNEIEELANSITNIQKEEMNNLQNiePKEIVNVSYDADEnfikEEGYLTHMIG 205
Cdd:COG3708    1 MEYRIVEKPAFKLVGLSARTSNSDEEANEEIPALWQRFLPEGLAEIPNLSN--PGGLYGVCTDYES----DEGEFDYLAG 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616613806 206 VITTE-NNISDQLDVINIDESKWIVFENEGKFPKVLQDTYAKIYSEWLPETEYKLANVPMFSFTKFNDSDSDNAYSEIWV 284
Cdd:COG3708   75 VEVSSfDEVPEGLETLEIPAGTYAVFTHKGPMPEALQETWQYIYSEWLPSSGYERADGPDFEVYDERDDPSPDSEVEIWI 154


                 ..
gi 616613806 285 AV 286
Cdd:COG3708  155 PI 156
AraC_E_bind smart00871
Bacterial transcription activator, effector binding domain; This domain is found in the ...
 127-286 7.41e-22

Bacterial transcription activator, effector binding domain; This domain is found in the probable effector binding domain of a number of different bacterial transcription activators.and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.


Pssm-ID: 214874 [Multi-domain]  Cd Length: 158  Bit Score: 89.46  E-value: 7.41e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616613806   127 KTRIVDLPKINIVGVKKRVRMQYEGVNNEIEELANSItniqkEEMNNLQNIEPKEIVNVSYDADEnfIKEEGYLTHMIGV 206
Cdd:smart00871   1 EVRIVELPAFKVAGLRHRGPNEDEKIPELWQRLIQWA-----KELGLLPVGNSGEPYGVYYDDPD--DTPDGEFRYDAGV 73

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616613806   207 -ITTENNISDQLDVINIDESKWIVFENEGKFPKVLQDTYAKIYSEWLPETEYKLAN-VPMFSF--TKFNDSDSDNAYSEI 282
Cdd:smart00871  74 eVSDEVEAPEGVETKTIPAGKYAVFTHKGGSYDEIQEAWEAIYGEWLPNSGYELRDaGPDFEVylNDPPDTDPEELVTEI 153


                   ....
gi 616613806   283 WVAV 286
Cdd:smart00871 154 YIPV 157
GyrI-like pfam06445
GyrI-like small molecule binding domain; This family contains the small molecule binding ...
 129-286 8.15e-20

GyrI-like small molecule binding domain; This family contains the small molecule binding domain of a number of different bacterial transcription activators. This family also contains DNA gyrase inhibitors. The GyrI superfamily contains a diad of the SHS2 module, adapted for small-molecule binding. The GyrI superfamily includes a family of secreted forms that is found only in animals and the bacterial pathogen Leptospira.


Pssm-ID: 428947  Cd Length: 153  Bit Score: 83.61  E-value: 8.15e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616613806  129 RIVDLPKINIVGVKKRVRMQYEGVNNEIEELansitnIQKEEMNNLQNiEPKEIVNVSYDADENfiKEEGYLTHMIGVIT 208
Cdd:pfam06445   3 EIVELPAFRVAGLRHRGPYNEEGIGALWEEL------CAWASENGLSP-APSPLIGVSYDDPEV--TEDEELRYDAGVAV 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616613806  209 TEN-NISDQLDVINIDESKWIVFENEGKFPKvLQDTYAKIYSEWLPETEYKLANVPMFSFTK--FNDSDSDNAYSEIWVA 285
Cdd:pfam06445  74 PIPvEGPEGVEELELPGGEYAVFRHKGPYDD-LQETYAKIYGEWLPESGYERRDGPSFEIYLndPREVPEEELKTEIYIP 152


                  .
gi 616613806  286 V 286
Cdd:pfam06445 153 V 153
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
22-101 6.27e-12

helix_turn_helix, arabinose operon control protein;


Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 60.26  E-value: 6.27e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616613806    22 DLNLYDIANFVGLPEQHYRNLFIFLTGIGLSEYIKKRKLYFANKDLLN-KESVTSVAIKYGY-SIDGFTKSFKDWSGYLP 99
Cdd:smart00342   1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDtDLSVTEIALRVGFsSQSYFSRAFKKLFGVTP 80


                   ..
gi 616613806   100 SQ 101
Cdd:smart00342  81 SE 82
AraC COG2207
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
15-101 3.86e-09

AraC-type DNA-binding domain and AraC-containing proteins [Transcription];


Pssm-ID: 441809 [Multi-domain]  Cd Length: 258  Bit Score: 56.33  E-value: 3.86e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616613806  15 IDQNLTKDLNLYDIANFVGLPEQHYRNLFIFLTGIGLSEYIKKRKLYFAnKDLL--NKESVTSVAIKYGY-SIDGFTKSF 91
Cdd:COG2207  161 LLLLLLLLLTLEELARELGLSPRTLSRLFKEETGTSPKQYLRELRLERA-KRLLaeTDLSISEIAYELGFsSQSHFSRAF 239

                         90
                 ....*....|
gi 616613806  92 KDWSGYLPSQ 101
Cdd:COG2207  240 KKRFGVTPSE 249
HTH_18 pfam12833
Helix-turn-helix domain;
28-101 1.46e-07

Helix-turn-helix domain;


Pssm-ID: 432818 [Multi-domain]  Cd Length: 81  Bit Score: 47.97  E-value: 1.46e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 616613806   28 IANFVGLPEQHYRNLFIFLTGIGLSEYIKKRKLYFANKDLLNK--ESVTSVAIKYGY-SIDGFTKSFKDWSGYLPSQ 101
Cdd:pfam12833   1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLLEDtgLSVAEIALALGFsDASHFSRAFRRLFGLTPSE 77
PRK10219 PRK10219
superoxide response transcriptional regulator SoxS;
12-92 1.37e-06

superoxide response transcriptional regulator SoxS;


Pssm-ID: 182314 [Multi-domain]  Cd Length: 107  Bit Score: 46.07  E-value: 1.37e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616613806  12 IDYIDQNLTKDLNLYDIANFVGLPEQHYRNLFIFLTGIGLSEYIKKRKLYFANKDLLNKES-VTSVAIKYGY-SIDGFTK 89
Cdd:PRK10219  11 IAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGDYIRQRRLLLAAVELRTTERpIFDIAMDLGYvSQQTFSR 90


                 ...
gi 616613806  90 SFK 92
Cdd:PRK10219  91 VFR 93
 
Name Accession Description Interval E-value
YdeE COG3708
Predicted transcriptional regulator YdeE, contains AraC-type DNA-binding domain [Transcription] ...
 126-286 7.78e-37

Predicted transcriptional regulator YdeE, contains AraC-type DNA-binding domain [Transcription];


Pssm-ID: 442922  Cd Length: 157  Bit Score: 128.60  E-value: 7.78e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616613806 126 MKTRIVDLPKINIVGVKKRVRMQYEGVNNEIEELANSITNIQKEEMNNLQNiePKEIVNVSYDADEnfikEEGYLTHMIG 205
Cdd:COG3708    1 MEYRIVEKPAFKLVGLSARTSNSDEEANEEIPALWQRFLPEGLAEIPNLSN--PGGLYGVCTDYES----DEGEFDYLAG 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616613806 206 VITTE-NNISDQLDVINIDESKWIVFENEGKFPKVLQDTYAKIYSEWLPETEYKLANVPMFSFTKFNDSDSDNAYSEIWV 284
Cdd:COG3708   75 VEVSSfDEVPEGLETLEIPAGTYAVFTHKGPMPEALQETWQYIYSEWLPSSGYERADGPDFEVYDERDDPSPDSEVEIWI 154


                 ..
gi 616613806 285 AV 286
Cdd:COG3708  155 PI 156
AraC_E_bind smart00871
Bacterial transcription activator, effector binding domain; This domain is found in the ...
 127-286 7.41e-22

Bacterial transcription activator, effector binding domain; This domain is found in the probable effector binding domain of a number of different bacterial transcription activators.and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.


Pssm-ID: 214874 [Multi-domain]  Cd Length: 158  Bit Score: 89.46  E-value: 7.41e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616613806   127 KTRIVDLPKINIVGVKKRVRMQYEGVNNEIEELANSItniqkEEMNNLQNIEPKEIVNVSYDADEnfIKEEGYLTHMIGV 206
Cdd:smart00871   1 EVRIVELPAFKVAGLRHRGPNEDEKIPELWQRLIQWA-----KELGLLPVGNSGEPYGVYYDDPD--DTPDGEFRYDAGV 73

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616613806   207 -ITTENNISDQLDVINIDESKWIVFENEGKFPKVLQDTYAKIYSEWLPETEYKLAN-VPMFSF--TKFNDSDSDNAYSEI 282
Cdd:smart00871  74 eVSDEVEAPEGVETKTIPAGKYAVFTHKGGSYDEIQEAWEAIYGEWLPNSGYELRDaGPDFEVylNDPPDTDPEELVTEI 153


                   ....
gi 616613806   283 WVAV 286
Cdd:smart00871 154 YIPV 157
GyrI-like pfam06445
GyrI-like small molecule binding domain; This family contains the small molecule binding ...
 129-286 8.15e-20

GyrI-like small molecule binding domain; This family contains the small molecule binding domain of a number of different bacterial transcription activators. This family also contains DNA gyrase inhibitors. The GyrI superfamily contains a diad of the SHS2 module, adapted for small-molecule binding. The GyrI superfamily includes a family of secreted forms that is found only in animals and the bacterial pathogen Leptospira.


Pssm-ID: 428947  Cd Length: 153  Bit Score: 83.61  E-value: 8.15e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616613806  129 RIVDLPKINIVGVKKRVRMQYEGVNNEIEELansitnIQKEEMNNLQNiEPKEIVNVSYDADENfiKEEGYLTHMIGVIT 208
Cdd:pfam06445   3 EIVELPAFRVAGLRHRGPYNEEGIGALWEEL------CAWASENGLSP-APSPLIGVSYDDPEV--TEDEELRYDAGVAV 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616613806  209 TEN-NISDQLDVINIDESKWIVFENEGKFPKvLQDTYAKIYSEWLPETEYKLANVPMFSFTK--FNDSDSDNAYSEIWVA 285
Cdd:pfam06445  74 PIPvEGPEGVEELELPGGEYAVFRHKGPYDD-LQETYAKIYGEWLPESGYERRDGPSFEIYLndPREVPEEELKTEIYIP 152


                  .
gi 616613806  286 V 286
Cdd:pfam06445 153 V 153
Cass2 pfam14526
Integron-associated effector binding protein; This family contains Cass2 from Vibrio cholerae, ...
 129-286 1.61e-16

Integron-associated effector binding protein; This family contains Cass2 from Vibrio cholerae, an integron-associated protein that has been shown to bind cationic drug compounds with submicromolar affinity. Cass2 has been proposed to be representative of a larger family of independent effector-binding proteins associated with lateral gene transfer within Vibrio and other closely-related species.


Pssm-ID: 434016 [Multi-domain]  Cd Length: 149  Bit Score: 74.70  E-value: 1.61e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616613806  129 RIVDLPKINIVGVKKRVRMQYEGVNNEIEELansitniqKEEMNNLQNIEPKEIVNVSYDADENFIKEEGYLTHMIGVIT 208
Cdd:pfam14526   1 EIVELPSFTVAGIRYEGPNEYEDHNKEIGKF--------WEEFNEDGRLPNIKKDDKSYGIYVDYEDEENEFDYYAGVEV 72

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 616613806  209 TEN-NISDQLDVINIDESKWIVFENEGKFPKVLQDTYAKIYSEWLPETEYKLANVPmfSFTKFNDSDSDNAYSEIWVAV 286
Cdd:pfam14526  73 PSFsELPEGLVVIEIPGGKYAVFTIEGDFPDAIAEAWTRIYGWLLPNSGYERAGGP--DFEVYKENGDENMKIELYIPV 149
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
22-101 6.27e-12

helix_turn_helix, arabinose operon control protein;


Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 60.26  E-value: 6.27e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616613806    22 DLNLYDIANFVGLPEQHYRNLFIFLTGIGLSEYIKKRKLYFANKDLLN-KESVTSVAIKYGY-SIDGFTKSFKDWSGYLP 99
Cdd:smart00342   1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDtDLSVTEIALRVGFsSQSYFSRAFKKLFGVTP 80


                   ..
gi 616613806   100 SQ 101
Cdd:smart00342  81 SE 82
SbmC COG3449
DNA gyrase inhibitor GyrI/SbmC [Replication, recombination and repair];
4-265 6.02e-11

DNA gyrase inhibitor GyrI/SbmC [Replication, recombination and repair];


Pssm-ID: 442672 [Multi-domain]  Cd Length: 286  Bit Score: 61.80  E-value: 6.02e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616613806   4 ILKNLNDSIDYIDQNLTKDLNLYDIANFVGLPEQHYRnlFIFLTGIGLSEYIKKRKLYFANKDLLNKESVTSVAIKYGYS 83
Cdd:COG3449   11 QRRRILLVLIALHDDLDLLLLALLLAFAFHFFFFHRR--RRFRALIGRRARLLLRRRLLAALALLLLSSSAIIAAAAAAS 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616613806  84 IDGFTKSFKDWSGYLPSQIYEEQVLISYPKLSFAINVKGGID--MKTRIVDLPKINIVGVkkRVRMQYEGVNNEIEELAN 161
Cdd:COG3449   89 GYSSSASFRRFFRAFGGSSRSRRRRAKAKLLALPPLDPPRLEpmMDVEIKELPPRRVAYL--RHRGPYEEIGEAFERLIA 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616613806 162 SITNiqkeemnnlQNIEPK--EIVNVSYDaDENFIKEEGYLTHmIGVITTEN-NISDQLDVINIDESKWIVFENEGKFPK 238
Cdd:COG3449  167 WAKA---------RGLLPPdsRTIGIYYD-DPDITPPEKLRYD-ACVTVPEDvALPGGVEVKTIPGGRYAVLRHKGPYED 235

                        250       260
                 ....*....|....*....|....*..
gi 616613806 239 vLQDTYAKIYSEWLPETEYKLANVPMF 265
Cdd:COG3449  236 -LGAAWDWLYGEWLPASGYELRDRPCF 261
AraC COG2207
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
15-101 3.86e-09

AraC-type DNA-binding domain and AraC-containing proteins [Transcription];


Pssm-ID: 441809 [Multi-domain]  Cd Length: 258  Bit Score: 56.33  E-value: 3.86e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616613806  15 IDQNLTKDLNLYDIANFVGLPEQHYRNLFIFLTGIGLSEYIKKRKLYFAnKDLL--NKESVTSVAIKYGY-SIDGFTKSF 91
Cdd:COG2207  161 LLLLLLLLLTLEELARELGLSPRTLSRLFKEETGTSPKQYLRELRLERA-KRLLaeTDLSISEIAYELGFsSQSHFSRAF 239

                         90
                 ....*....|
gi 616613806  92 KDWSGYLPSQ 101
Cdd:COG2207  240 KKRFGVTPSE 249
HTH_18 pfam12833
Helix-turn-helix domain;
28-101 1.46e-07

Helix-turn-helix domain;


Pssm-ID: 432818 [Multi-domain]  Cd Length: 81  Bit Score: 47.97  E-value: 1.46e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 616613806   28 IANFVGLPEQHYRNLFIFLTGIGLSEYIKKRKLYFANKDLLNK--ESVTSVAIKYGY-SIDGFTKSFKDWSGYLPSQ 101
Cdd:pfam12833   1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLLEDtgLSVAEIALALGFsDASHFSRAFRRLFGLTPSE 77
PRK10219 PRK10219
superoxide response transcriptional regulator SoxS;
12-92 1.37e-06

superoxide response transcriptional regulator SoxS;


Pssm-ID: 182314 [Multi-domain]  Cd Length: 107  Bit Score: 46.07  E-value: 1.37e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616613806  12 IDYIDQNLTKDLNLYDIANFVGLPEQHYRNLFIFLTGIGLSEYIKKRKLYFANKDLLNKES-VTSVAIKYGY-SIDGFTK 89
Cdd:PRK10219  11 IAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGDYIRQRRLLLAAVELRTTERpIFDIAMDLGYvSQQTFSR 90


                 ...
gi 616613806  90 SFK 92
Cdd:PRK10219  91 VFR 93
PRK11511 PRK11511
MDR efflux pump AcrAB transcriptional activator MarA;
12-94 5.67e-05

MDR efflux pump AcrAB transcriptional activator MarA;


Pssm-ID: 236920 [Multi-domain]  Cd Length: 127  Bit Score: 42.01  E-value: 5.67e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616613806  12 IDYIDQNLTKDLNLYDIANFVGLPEQHYRNLFIFLTGIGLSEYIKKRKLY-FANKDLLNKESVTSVAIKYGY-SIDGFTK 89
Cdd:PRK11511  15 LDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTeIAQKLKESNEPILYLAERYGFeSQQTLTR 94


                 ....*
gi 616613806  90 SFKDW 94
Cdd:PRK11511  95 TFKNY 99
AdaA COG2169
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), ...
 12-101 4.22e-04

Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains [Replication, recombination and repair];


Pssm-ID: 441772 [Multi-domain]  Cd Length: 358  Bit Score: 41.19  E-value: 4.22e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616613806  12 IDYIDQNLTKDLNLYDIANFVGLPEQHYRNLFIFLTGIGLSEYIKKRKLYFAnKDLLNK-ESVTSVAIKYGY-SIDGFTK 89
Cdd:COG2169   90 CRLIEAGAEDRPSLEDLAARLGLSPRHLRRLFKAHTGVTPKAYARARRLLRA-RQLLQTgLSVTDAAYAAGFgSLSRFYE 168

                         90
                 ....*....|..
gi 616613806  90 SFKDWSGYLPSQ 101
Cdd:COG2169  169 AFKKLLGMTPSA 180
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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