NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1763998714|gb|KAB5292931|]
View 

DUF4434 domain-containing protein [Bacteroides stercoris]

Protein Classification

alpha-amylase family protein; alpha-amylase family glycosyl hydrolase( domain architecture ID 12168012)

alpha-amylase family protein may catalyze the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides| alpha-amylase family glycosyl hydrolase functions as a glycoside hydrolase that may act on starch, glycogen, and related oligo- and polysaccharides

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF5109 pfam17134
Domain of unknown function (DUF5109); This is a family of Gram-positive Bacteroidetes and ...
 240-353 2.10e-76

Domain of unknown function (DUF5109); This is a family of Gram-positive Bacteroidetes and Firmicutes proteins. It lies just C-terminal to a putative glycosyl-hydrolase family, DUF4434, pfam14488. It is likely to be some form of binding or recognition domain.


:

Pssm-ID: 407268  Cd Length: 114  Bit Score: 230.73  E-value: 2.10e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1763998714 240 DEHEREWNEIFDGIHDVVDACAFQDGHIDYDELDAFFTVNKKLADKYGMQCWTNAESFDRDMPIKFFPIKWDKLRMKLEA 319
Cdd:pfam17134   1 DEHEEEWEEIFSGTQGAVDIVAFQDGHIDYDELPEFFTANKKLADKYGLQCWTNAETFDRDMPIKFPPIDWEKLRLKLEA 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1763998714 320 ARRAGYDKAITFEFSHFMSPQSAYLQAGHLYNRY 353
Cdd:pfam17134  81 AKRAGVDKAITFEFSHFMSPNSAYLQAHHLYNRY 114
DUF4434 pfam14488
Domain of unknown function (DUF4434);
53-221 1.15e-70

Domain of unknown function (DUF4434);


:

Pssm-ID: 433985 [Multi-domain]  Cd Length: 169  Bit Score: 218.03  E-value: 1.15e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1763998714  53 ITGTFLDEISHDIPHQNWGEREWDQDFRYMRSIGIDTVIMIRSGYRKFITYPSAHLLGKGCYMPSVDLLDMFLRLADKYS 132
Cdd:pfam14488   1 ITGTFLQLQHHDLPHQNWTDAQWDEDLHELKELGMDTLILQWVGYGGKATYPSKYLSSNKFDIPPVDLVELILDAAEELG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1763998714 133 MKFYFGLYDSGCYWD-TGDLSWEIEDNKYVIDEVWQNYGSkYKSFGGWYISGEISRATKGAIDAFHAMGKQCKDVSGGLP 211
Cdd:pfam14488  81 MKVFFGLNYDGEWWDhQGDLSWEAELANLIAEELYKNYGH-HPAFYGWYIPYEIDQYKWNAPEYINLLGKHLKNLSNRLP 159

                         170
                  ....*....|
gi 1763998714 212 TFISPWIDGK 221
Cdd:pfam14488 160 NLISPFMNGK 169
DUF1501 super family cl19855
Protein of unknown function (DUF1501); This family contains a number of hypothetical bacterial ...
 3-29 7.99e-04

Protein of unknown function (DUF1501); This family contains a number of hypothetical bacterial proteins of unknown function approximately 400 residues long.


The actual alignment was detected with superfamily member COG4102:

Pssm-ID: 473233  Cd Length: 395  Bit Score: 41.08  E-value: 7.99e-04
                          10        20
                  ....*....|....*....|....*..
gi 1763998714   3 TRRDFLKRTALLGASAFMAPSLLGRES 29
Cdd:COG4102     2 SRRDFLKASAAAGAGGLALPGLLAALA 28
 
Name Accession Description Interval E-value
DUF5109 pfam17134
Domain of unknown function (DUF5109); This is a family of Gram-positive Bacteroidetes and ...
 240-353 2.10e-76

Domain of unknown function (DUF5109); This is a family of Gram-positive Bacteroidetes and Firmicutes proteins. It lies just C-terminal to a putative glycosyl-hydrolase family, DUF4434, pfam14488. It is likely to be some form of binding or recognition domain.


Pssm-ID: 407268  Cd Length: 114  Bit Score: 230.73  E-value: 2.10e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1763998714 240 DEHEREWNEIFDGIHDVVDACAFQDGHIDYDELDAFFTVNKKLADKYGMQCWTNAESFDRDMPIKFFPIKWDKLRMKLEA 319
Cdd:pfam17134   1 DEHEEEWEEIFSGTQGAVDIVAFQDGHIDYDELPEFFTANKKLADKYGLQCWTNAETFDRDMPIKFPPIDWEKLRLKLEA 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1763998714 320 ARRAGYDKAITFEFSHFMSPQSAYLQAGHLYNRY 353
Cdd:pfam17134  81 AKRAGVDKAITFEFSHFMSPNSAYLQAHHLYNRY 114
DUF4434 pfam14488
Domain of unknown function (DUF4434);
53-221 1.15e-70

Domain of unknown function (DUF4434);


Pssm-ID: 433985 [Multi-domain]  Cd Length: 169  Bit Score: 218.03  E-value: 1.15e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1763998714  53 ITGTFLDEISHDIPHQNWGEREWDQDFRYMRSIGIDTVIMIRSGYRKFITYPSAHLLGKGCYMPSVDLLDMFLRLADKYS 132
Cdd:pfam14488   1 ITGTFLQLQHHDLPHQNWTDAQWDEDLHELKELGMDTLILQWVGYGGKATYPSKYLSSNKFDIPPVDLVELILDAAEELG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1763998714 133 MKFYFGLYDSGCYWD-TGDLSWEIEDNKYVIDEVWQNYGSkYKSFGGWYISGEISRATKGAIDAFHAMGKQCKDVSGGLP 211
Cdd:pfam14488  81 MKVFFGLNYDGEWWDhQGDLSWEAELANLIAEELYKNYGH-HPAFYGWYIPYEIDQYKWNAPEYINLLGKHLKNLSNRLP 159

                         170
                  ....*....|
gi 1763998714 212 TFISPWIDGK 221
Cdd:pfam14488 160 NLISPFMNGK 169
COG4102 COG4102
Uncharacterized conserved protein, DUF1501 family [Function unknown];
3-29 7.99e-04

Uncharacterized conserved protein, DUF1501 family [Function unknown];


Pssm-ID: 443278  Cd Length: 395  Bit Score: 41.08  E-value: 7.99e-04
                          10        20
                  ....*....|....*....|....*..
gi 1763998714   3 TRRDFLKRTALLGASAFMAPSLLGRES 29
Cdd:COG4102     2 SRRDFLKASAAAGAGGLALPGLLAALA 28
 
Name Accession Description Interval E-value
DUF5109 pfam17134
Domain of unknown function (DUF5109); This is a family of Gram-positive Bacteroidetes and ...
 240-353 2.10e-76

Domain of unknown function (DUF5109); This is a family of Gram-positive Bacteroidetes and Firmicutes proteins. It lies just C-terminal to a putative glycosyl-hydrolase family, DUF4434, pfam14488. It is likely to be some form of binding or recognition domain.


Pssm-ID: 407268  Cd Length: 114  Bit Score: 230.73  E-value: 2.10e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1763998714 240 DEHEREWNEIFDGIHDVVDACAFQDGHIDYDELDAFFTVNKKLADKYGMQCWTNAESFDRDMPIKFFPIKWDKLRMKLEA 319
Cdd:pfam17134   1 DEHEEEWEEIFSGTQGAVDIVAFQDGHIDYDELPEFFTANKKLADKYGLQCWTNAETFDRDMPIKFPPIDWEKLRLKLEA 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1763998714 320 ARRAGYDKAITFEFSHFMSPQSAYLQAGHLYNRY 353
Cdd:pfam17134  81 AKRAGVDKAITFEFSHFMSPNSAYLQAHHLYNRY 114
DUF4434 pfam14488
Domain of unknown function (DUF4434);
53-221 1.15e-70

Domain of unknown function (DUF4434);


Pssm-ID: 433985 [Multi-domain]  Cd Length: 169  Bit Score: 218.03  E-value: 1.15e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1763998714  53 ITGTFLDEISHDIPHQNWGEREWDQDFRYMRSIGIDTVIMIRSGYRKFITYPSAHLLGKGCYMPSVDLLDMFLRLADKYS 132
Cdd:pfam14488   1 ITGTFLQLQHHDLPHQNWTDAQWDEDLHELKELGMDTLILQWVGYGGKATYPSKYLSSNKFDIPPVDLVELILDAAEELG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1763998714 133 MKFYFGLYDSGCYWD-TGDLSWEIEDNKYVIDEVWQNYGSkYKSFGGWYISGEISRATKGAIDAFHAMGKQCKDVSGGLP 211
Cdd:pfam14488  81 MKVFFGLNYDGEWWDhQGDLSWEAELANLIAEELYKNYGH-HPAFYGWYIPYEIDQYKWNAPEYINLLGKHLKNLSNRLP 159

                         170
                  ....*....|
gi 1763998714 212 TFISPWIDGK 221
Cdd:pfam14488 160 NLISPFMNGK 169
COG4102 COG4102
Uncharacterized conserved protein, DUF1501 family [Function unknown];
3-29 7.99e-04

Uncharacterized conserved protein, DUF1501 family [Function unknown];


Pssm-ID: 443278  Cd Length: 395  Bit Score: 41.08  E-value: 7.99e-04
                          10        20
                  ....*....|....*....|....*..
gi 1763998714   3 TRRDFLKRTALLGASAFMAPSLLGRES 29
Cdd:COG4102     2 SRRDFLKASAAAGAGGLALPGLLAALA 28
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH