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Conserved domains on  [gi|1755237950|gb|KAB0839296|]
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sugar ABC transporter permease [Cronobacter sakazakii]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 10003067)

carbohydrate ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter responsible for the translocation across the membrane of one or more from a variety of carbohydrate substrates including trehalose, lactose, arabinose, and maltodextrin

Gene Ontology:  GO:0042626|GO:0140359|GO:0008643|GO:0055085
PubMed:  25750732|24638992|30626703
TCDB:  3.A.1.1.-

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
44-310 2.16e-81

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 248.51  E-value: 2.16e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950  44 WPLVRTIWFSFTNAMLdAPQDYQMVGIANYfarkdgvsIGVLSDPLWWQAVGNTLWFTFTSVALELLLGMLLALLMNEKF 123
Cdd:COG1175    37 YPLLYTLYLSFTDWNL-LGPPPEFVGLDNY--------ARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNRKL 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 124 RGQGLVRTAILIPWAIPTIVSAKMWGWMFHDQYGVVNDLLGKIGLPSHlAWIAEPSLSMWAVVIADVWKTTPFMALMLLA 203
Cdd:COG1175   108 RGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGALGLEPI-NWLGDPSLALPAVIIVTVWKGTGFNMLIFLA 186

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 204 ALQLIPADLYEAAKVDGASPWQRFKRITLPLIMPALVVALIFRVMDSMRIFDLIYVLTSN--SEATMSISGYAREQIVSY 281
Cdd:COG1175   187 GLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGgpGNSTTTLVLYIYQTAFQQ 266

                         250       260
                  ....*....|....*....|....*....
gi 1755237950 282 QDMGMGSAASVLVFMMVAGIAACFIRVAR 310
Cdd:COG1175   267 FDFGYASAIAVVLFLIILVLTLLQLRLLR 295
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
44-310 2.16e-81

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 248.51  E-value: 2.16e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950  44 WPLVRTIWFSFTNAMLdAPQDYQMVGIANYfarkdgvsIGVLSDPLWWQAVGNTLWFTFTSVALELLLGMLLALLMNEKF 123
Cdd:COG1175    37 YPLLYTLYLSFTDWNL-LGPPPEFVGLDNY--------ARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNRKL 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 124 RGQGLVRTAILIPWAIPTIVSAKMWGWMFHDQYGVVNDLLGKIGLPSHlAWIAEPSLSMWAVVIADVWKTTPFMALMLLA 203
Cdd:COG1175   108 RGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGALGLEPI-NWLGDPSLALPAVIIVTVWKGTGFNMLIFLA 186

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 204 ALQLIPADLYEAAKVDGASPWQRFKRITLPLIMPALVVALIFRVMDSMRIFDLIYVLTSN--SEATMSISGYAREQIVSY 281
Cdd:COG1175   187 GLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGgpGNSTTTLVLYIYQTAFQQ 266

                         250       260
                  ....*....|....*....|....*....
gi 1755237950 282 QDMGMGSAASVLVFMMVAGIAACFIRVAR 310
Cdd:COG1175   267 FDFGYASAIAVVLFLIILVLTLLQLRLLR 295
malF PRK10999
maltose ABC transporter permease MalF;
121-312 3.50e-19

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 87.71  E-value: 3.50e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 121 EKFRGQGLVRTAILIPWAIPTIVSAKMWGWMFHDQYGVVNDLLGKI-GL-PshlAWIAEPSLSMWAVVIADVWKTTPFMA 198
Cdd:PRK10999  315 EALKGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALfGIkP---AWFSDPTLAKTMILIVNTWLGYPYMM 391

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 199 LMLLAALQLIPADLYEAAKVDGASPWQRFKRITLPLIMPALVVALIFRVMDSMRIFDLIYVLTS---NSEATMSISGYAr 275
Cdd:PRK10999  392 ILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNggpDMIGTTTPAGYT- 470

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1755237950 276 EQIVSY-----------QDMGMGSAASVLVFMMVAGIAACFIRVARLN 312
Cdd:PRK10999  471 DLLVSYtyriafeggggQDFGLAAAIATLIFLLVGALAILNLKATKMK 518
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 122-298 1.87e-17

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 78.86  E-value: 1.87e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 122 KFRGQGLVRTAILIPWAIPTIVSAKMWGWMFhdqygvvndllgkiglPSHLAWIAEPSLSMWAVVIADVWkTTPFMALML 201
Cdd:cd06261    30 RGKLDRLLRRIIDLLLSLPSLVLGLLLVLLF----------------GVLLGWGILPGLGLPALILALLL-IAPFARLIR 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 202 LAALQLIPADLYEAAKVDGASPWQRFKRITLPLIMPALVVALIFRVMDSMRIFDLIYVLTSNSEATMSISGYAREQIVSY 281
Cdd:cd06261    93 RAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIFAILFP 172

                         170
                  ....*....|....*..
gi 1755237950 282 QDMGMGSAASVLVFMMV 298
Cdd:cd06261   173 GDLGVAAAVALILLLLS 189
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 122-314 5.36e-12

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 63.47  E-value: 5.36e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 122 KFRGQGLVRTAILIPWAIPTIVSAKMWgwmfhdqygVVNDLLGKIGLpshlawiaepslSMWAVVIADVWKTTPFMALML 201
Cdd:pfam00528  13 GRRLDRLLRPLIDLLQALPSFVLAILL---------VVIAILSILGH------------GILPAIILALLGWAGYARLIR 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 202 LAALQLIPADLYEAAKVDGASPWQRFKRITLPLIMPALVVALIFRVMDSMRIFDLIYVLTSNSEAtmsisGYAREQIVSY 281
Cdd:pfam00528  72 RAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGL-----GLLLIEAILG 146

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1755237950 282 QDMGMGSAASVLVFMMVAGIAACFIRVARLNDK 314
Cdd:pfam00528 147 YDYPEIQGPVLAAALILLLLNLLVDILQRLLDP 179
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 46-306 1.71e-10

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 61.62  E-value: 1.71e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950  46 LVRTIWFSFTNAMLDApqDYQMVGIANYfarkdgvsIGVLSDPLWWQAVGNTLWFTFTSVALELLLG-MLLALLMNEKFR 124
Cdd:TIGR03262  18 LLLPLLALLTKSVYDS--DGDFIGLANF--------AEYFATPGLLQSLGNSLTVSAIVTAIVVPLAfAFAYALTRSRIP 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 125 GQGLVRTAILIPWAIPTIVSAKMWGWMFHDQyGVVNDLLGkiglpshlawiAEPSLSMWAVVIADVWKTTPFMALMLLAA 204
Cdd:TIGR03262  88 GKGAFRLVALLPLLAPSLLPAISLIYLFGNQ-GLLKGLLG-----------GFSIYGFWGIVIGEVFYTFPHALMILVTA 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 205 LQLIPADLYEAAKVDGASPWQRFKRITLPLIMPALVVALIfrVMDSMRIFDL-IYVLTSNSEATMSISGYarEQIVSYQD 283
Cdd:TIGR03262 156 LSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAF--VVFTLVITDFgVPKVIGGDYNVLATDIY--KQVIGQQN 231

                         250       260
                  ....*....|....*....|...
gi 1755237950 284 MGMGSAASVLvfMMVAGIAACFI 306
Cdd:TIGR03262 232 FPMGAVVGVL--LLLPALLAFGI 252
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
44-310 2.16e-81

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 248.51  E-value: 2.16e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950  44 WPLVRTIWFSFTNAMLdAPQDYQMVGIANYfarkdgvsIGVLSDPLWWQAVGNTLWFTFTSVALELLLGMLLALLMNEKF 123
Cdd:COG1175    37 YPLLYTLYLSFTDWNL-LGPPPEFVGLDNY--------ARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNRKL 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 124 RGQGLVRTAILIPWAIPTIVSAKMWGWMFHDQYGVVNDLLGKIGLPSHlAWIAEPSLSMWAVVIADVWKTTPFMALMLLA 203
Cdd:COG1175   108 RGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGALGLEPI-NWLGDPSLALPAVIIVTVWKGTGFNMLIFLA 186

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 204 ALQLIPADLYEAAKVDGASPWQRFKRITLPLIMPALVVALIFRVMDSMRIFDLIYVLTSN--SEATMSISGYAREQIVSY 281
Cdd:COG1175   187 GLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGgpGNSTTTLVLYIYQTAFQQ 266

                         250       260
                  ....*....|....*....|....*....
gi 1755237950 282 QDMGMGSAASVLVFMMVAGIAACFIRVAR 310
Cdd:COG1175   267 FDFGYASAIAVVLFLIILVLTLLQLRLLR 295
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 84-299 2.53e-22

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 94.77  E-value: 2.53e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950  84 VLSDPLWWQAVGNTLWFTFTSVALELLLGMLLALLMNE----KFRGqgLVRTAILIPWAIPTIVSAKMWGWMFHDQYGVV 159
Cdd:COG4209    78 LFSSPDFWRVLRNTLLISLLKLVFGFPLPIILALLLNElrskRFKK--TVQTISYLPHFLSWVVVAGIVYQFLSPDTGLV 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 160 NDLLGKIGLPShLAWIAEPSLSMWAVVIADVWKTTPFMALMLLAALQLIPADLYEAAKVDGASPWQRFKRITLPLIMPAL 239
Cdd:COG4209   156 NQLLRALGGEP-INFLTEPKYFRPIYVFSGIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGRWQQIWHITLPGIRPTI 234

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1755237950 240 VVALIFRVMDSMRI-FDLIYVLTS--NSEATMSISGYAREQIVSYQDMGMGSAA----SV--LVFMMVA 299
Cdd:COG4209   235 VILLILNIGNILNVgFEQIYLLYNplNYSTSDVIDTYVYRIGLQNGDYSYATAVglfkSVvgLILVLIA 303
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 44-317 6.88e-22

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 93.29  E-value: 6.88e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950  44 WPLVRTIWFSFTNAMLDAPQDYQmVGIANYfarkdgvsIGVLSDPLWWQAVGNTLWFTF-TSVALELLLGMLLALLMNEK 122
Cdd:COG1176    28 LPLLLLLVYSFTTRDPYGGVVPG-FTLENY--------ARLFTDPLYLKVLLRTLWIALlTTLICLLLGYPIAYFLARAP 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 123 FRGQGLVRTAILIPWAIPTIVsaKMWGWM-FHDQYGVVNDLLGKIGLpshlawIAEP-SL--SMWAVVIADVWKTTPFMA 198
Cdd:COG1176    99 PRWRNLLLLLVILPFWTSFLV--RTYAWIvLLGRNGLLNSLLLALGL------IDEPlRLlyTEFAVVIGLVYVYLPFMV 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 199 LMLLAALQLIPADLYEAAKVDGASPWQRFKRITLPLIMPALVVALIFRVMDSMRIFDLIYVLTSNSeaTMSISGYAREQI 278
Cdd:COG1176   171 LPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGK--VLMIGNLIYQQF 248

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1755237950 279 VSYQDMGMGSAASVLVFMMVAGIAACFIRVARLNDKEKS 317
Cdd:COG1176   249 LSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLLGG 287
malF PRK10999
maltose ABC transporter permease MalF;
121-312 3.50e-19

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 87.71  E-value: 3.50e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 121 EKFRGQGLVRTAILIPWAIPTIVSAKMWGWMFHDQYGVVNDLLGKI-GL-PshlAWIAEPSLSMWAVVIADVWKTTPFMA 198
Cdd:PRK10999  315 EALKGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALfGIkP---AWFSDPTLAKTMILIVNTWLGYPYMM 391

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 199 LMLLAALQLIPADLYEAAKVDGASPWQRFKRITLPLIMPALVVALIFRVMDSMRIFDLIYVLTS---NSEATMSISGYAr 275
Cdd:PRK10999  392 ILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNggpDMIGTTTPAGYT- 470

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1755237950 276 EQIVSY-----------QDMGMGSAASVLVFMMVAGIAACFIRVARLN 312
Cdd:PRK10999  471 DLLVSYtyriafeggggQDFGLAAAIATLIFLLVGALAILNLKATKMK 518
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
44-303 1.85e-17

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 82.52  E-value: 1.85e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950  44 WPLVRTIWFSFTnamldapqdyqmVGIANYFArkdgvsigVLSDPLWWQAVGNTLWFTF-TSVALELLLGMLLALLMNEK 122
Cdd:COG1178    26 LPLLALLLRAFT------------DGLANFWA--------LLSDPYLWRALGNTLLLALlVTLLSLLLGVPLAWLLARTD 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 123 FRGQGLVRTAILIPWAIPTIVSAKMWGWMFHDQyGVVNDLLGKIglpshLAWIAEPSLSMWAVVIADVWKTTPFMALMLL 202
Cdd:COG1178    86 FPGRRLLRWLLLLPLALPPYVVALAWIALFGPN-GLLNTLLRAL-----FGLEPPDIYGLGGIILVLVLFNYPYVYLLLR 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 203 AALQLIPADLYEAAKVDGASPWQRFKRITLPLIMPALV--VALIFrvMDSMRIFDLIYVLTSNSEaTMSISGYarEQIVS 280
Cdd:COG1178   160 AALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAagALLVF--LLCLADFGTPLVLGGGYT-TLTTAIY--QAWLG 234

                         250       260
                  ....*....|....*....|...
gi 1755237950 281 YQDMGMGSAASVLVFMMVAGIAA 303
Cdd:COG1178   235 DFDLGAAAALALVLLLLVLLLLL 257
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 122-298 1.87e-17

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 78.86  E-value: 1.87e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 122 KFRGQGLVRTAILIPWAIPTIVSAKMWGWMFhdqygvvndllgkiglPSHLAWIAEPSLSMWAVVIADVWkTTPFMALML 201
Cdd:cd06261    30 RGKLDRLLRRIIDLLLSLPSLVLGLLLVLLF----------------GVLLGWGILPGLGLPALILALLL-IAPFARLIR 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 202 LAALQLIPADLYEAAKVDGASPWQRFKRITLPLIMPALVVALIFRVMDSMRIFDLIYVLTSNSEATMSISGYAREQIVSY 281
Cdd:cd06261    93 RAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIFAILFP 172

                         170
                  ....*....|....*..
gi 1755237950 282 QDMGMGSAASVLVFMMV 298
Cdd:cd06261   173 GDLGVAAAVALILLLLS 189
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
44-301 7.31e-17

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 79.10  E-value: 7.31e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950  44 WPLVRTIWFSFTNamLDA-PQDYQMVGIANYFArkdgvsigVLSDPLWWQAVGNTLWFTFTSVALELLLGMLLALLMNEK 122
Cdd:PRK10561   16 WPAGEALWYSLQS--VDPfGFSSQFVGLDNFVA--------LFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAALVDYV 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 123 FRGQGLVRTAILIPWAIPTIVSAKMWGWMFHDQYGVVNDLLGKIGLPSHLAwiAEPSLSMWAVVIADVWKTTPFMALMLL 202
Cdd:PRK10561   86 VRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDWNHA--QNSGQAMFLVVFASVWKQISYNFLFFF 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 203 AALQLIPADLYEAAKVDGASPWQRFKRITLPLIMPA----LVVALIFRVMDSMRIFDLIYVLTSNSEATMSISGYAREQI 278
Cdd:PRK10561  164 AALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVsfflLVVNLVYAFFDTFPVIDAATSGGPVQATTTLIYKIYREGF 243

                         250       260
                  ....*....|....*....|...
gi 1755237950 279 VSYqDMGMGSAASVLVFMMVAGI 301
Cdd:PRK10561  244 TGL-DLSSSAAQSVVLMFLVIVL 265
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 84-316 1.29e-16

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 77.84  E-value: 1.29e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950  84 VLSDPLWWQAVGNTLWF-TFTSVALELLLGMLLALLMNEKFRGQGLVRTAILIPWAIPTIVSAkmwgwmfhdqYGVVNdL 162
Cdd:COG1177    53 LFSDPRLLDALLNSLLIaLLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLG----------VALLL-L 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 163 LGKIGLPshlawiaepsLSMWAVVIADVWKTTPFMALMLLAALQLIPADLYEAAKVDGASPWQRFKRITLPLIMPALVVA 242
Cdd:COG1177   122 FSALGLS----------GGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAG 191

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1755237950 243 LIFRVMDSMRIFDLIYVLTSNSEATMSISGYAReqiVSYQDMGMGSAASVLVFMMVAGIAACFIRVARLNDKEK 316
Cdd:COG1177   192 ALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSM---IRRGISPEINALSTLLILLSLLLLLLAERLRRRGERRR 262
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
82-314 2.25e-13

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 70.19  E-value: 2.25e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950  82 IGVLSDPLWWQAVGNTLWF-TFTSVALELLLGMLLALLMNEKFRGQGLVRTAILIPWAIPTIVsakmwgwmfhdqygvvn 160
Cdd:COG1178   328 RFVLLDPSLLRALLNSLLLaLLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIV----------------- 390

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 161 dlLGkIGLPSHLAWIAEPSL--SMWAVVIADVWKTTPFMALMLLAALQLIPADLYEAAKVDGASPWQRFKRITLPLIMPA 238
Cdd:COG1178   391 --LG-LGLLLLFNRPLPLLLygTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPG 467

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1755237950 239 LVVALIFRVMDSMRIFDLIYVLTSNSEATMSIsgyareQIVSYQDMGMGSAASVLVFMMVAGIAACFIRVARLNDK 314
Cdd:COG1178   468 LLAAALLVFVTSMKELSATLLLRPPGFETLAV------LIYQLASSGRYGEAAALALLLVLVSLLPVLLLERLLGR 537
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 123-244 3.33e-12

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 65.54  E-value: 3.33e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 123 FRGQGLVRTAILIPWAIPTIVSAKMWGWMFhDQYGVVNDLLGKIGLpshlawiaEPSLSMWAVVIADVWKTTPFMALMLL 202
Cdd:COG0555    86 FPGKRLVDALVDLPFALPTAVAGIALLLLF-GPNGWLGQLLAPLGI--------KVAFTPLGIVLAQTFVSLPFVVRTVQ 156

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1755237950 203 AALQLIPADLYEAAKVDGASPWQRFKRITLPLIMPALVVALI 244
Cdd:COG0555   157 PVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFA 198
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 122-314 5.36e-12

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 63.47  E-value: 5.36e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 122 KFRGQGLVRTAILIPWAIPTIVSAKMWgwmfhdqygVVNDLLGKIGLpshlawiaepslSMWAVVIADVWKTTPFMALML 201
Cdd:pfam00528  13 GRRLDRLLRPLIDLLQALPSFVLAILL---------VVIAILSILGH------------GILPAIILALLGWAGYARLIR 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 202 LAALQLIPADLYEAAKVDGASPWQRFKRITLPLIMPALVVALIFRVMDSMRIFDLIYVLTSNSEAtmsisGYAREQIVSY 281
Cdd:pfam00528  72 RAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGL-----GLLLIEAILG 146

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1755237950 282 QDMGMGSAASVLVFMMVAGIAACFIRVARLNDK 314
Cdd:pfam00528 147 YDYPEIQGPVLAAALILLLLNLLVDILQRLLDP 179
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 46-306 1.71e-10

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 61.62  E-value: 1.71e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950  46 LVRTIWFSFTNAMLDApqDYQMVGIANYfarkdgvsIGVLSDPLWWQAVGNTLWFTFTSVALELLLG-MLLALLMNEKFR 124
Cdd:TIGR03262  18 LLLPLLALLTKSVYDS--DGDFIGLANF--------AEYFATPGLLQSLGNSLTVSAIVTAIVVPLAfAFAYALTRSRIP 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 125 GQGLVRTAILIPWAIPTIVSAKMWGWMFHDQyGVVNDLLGkiglpshlawiAEPSLSMWAVVIADVWKTTPFMALMLLAA 204
Cdd:TIGR03262  88 GKGAFRLVALLPLLAPSLLPAISLIYLFGNQ-GLLKGLLG-----------GFSIYGFWGIVIGEVFYTFPHALMILVTA 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 205 LQLIPADLYEAAKVDGASPWQRFKRITLPLIMPALVVALIfrVMDSMRIFDL-IYVLTSNSEATMSISGYarEQIVSYQD 283
Cdd:TIGR03262 156 LSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAF--VVFTLVITDFgVPKVIGGDYNVLATDIY--KQVIGQQN 231

                         250       260
                  ....*....|....*....|...
gi 1755237950 284 MGMGSAASVLvfMMVAGIAACFI 306
Cdd:TIGR03262 232 FPMGAVVGVL--LLLPALLAFGI 252
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 208-294 2.48e-10

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 60.11  E-value: 2.48e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 208 IPADLYEAAKVDGASPWQRFKRITLPLIMPALVVALIFRVMDSMR--IFDLIYVltsNSEATMSISGYAREQIVSYQ-DM 284
Cdd:COG0395   170 IPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNdfLWPLILL---TSPDLRTLPVGLASFQGQYGtDW 246

                          90
                  ....*....|
gi 1755237950 285 GMGSAASVLV 294
Cdd:COG0395   247 GLLMAAAVIA 256
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 208-245 1.17e-09

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 58.24  E-value: 1.17e-09
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1755237950 208 IPADLYEAAKVDGASPWQRFKRITLPLIMPALVVALIF 245
Cdd:COG3833   169 IPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALL 206
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 122-244 4.92e-09

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 55.44  E-value: 4.92e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 122 KFRGQGLVRTAILIPWAIPTIVSakmwGWmfhdqYGVVndLLGKIGLP-SHLAWIAEPSL--SMWAVVIADVWKTTPFMA 198
Cdd:COG4149    38 RFRGKGLLEALVTLPLVLPPTVL----GF-----YLLL--LFGRNGPLgQLLEELFGISLvfTWTGAVLASVVVSLPLMV 106

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1755237950 199 LMLLAALQLIPADLYEAAKVDGASPWQRFKRITLPLIMPALVVALI 244
Cdd:COG4149   107 QPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAV 152
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 122-298 5.75e-09

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 55.82  E-value: 5.75e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 122 KFRGQGLVRTAILIPWAIPTIVSAKMWGWMFHDQyGVVNDLLGKIGLPSHLAWiaepslsmWAVVIADVWKTTPFMALML 201
Cdd:TIGR00969  91 QFPGRKLLDALIDLPFALSPVVAGLTLALLYGSN-GWLGSWLASFGIQIIFTW--------PGMALAMIFVSLPFVVREV 161

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 202 LAALQLIPADLYEAAKVDGASPWQRFKRITLPLIMPALVVALIFRVMDSMRIFDLIYVLTSN---SEATMSISGYAREQi 278
Cdd:TIGR00969 162 QPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVVVSGNipgKTLTLPLLIEERLE- 240

                         170       180
                  ....*....|....*....|
gi 1755237950 279 vSYQDMGMGSAASVLVFMMV 298
Cdd:TIGR00969 241 -QYDYPGAYVIAAVLLLVSL 259
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 122-244 4.32e-08

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 52.63  E-value: 4.32e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 122 KFRGQGLVRTAILIPWAIPTIVSAKMWGWMFHDQyGVVNDLLGKIGLPSHLAWIAepslsmwaVVIADVWKTTPFMALML 201
Cdd:TIGR02141  29 RFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPN-GPIGKLLELFGISLVFTFTG--------AVLASVIVSFPLMVQPI 99

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1755237950 202 LAALQLIPADLYEAAKVDGASPWQRFKRITLPLIMPALVVALI 244
Cdd:TIGR02141 100 RAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAV 142
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 122-244 1.73e-07

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 51.24  E-value: 1.73e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 122 KFRGQGLVRTAILIPWAIPTIVSAKMWGWMFhDQYGVVNDLLGKIGLPshlaWIaepsLSMWAVVIADVWKTTPFMALML 201
Cdd:TIGR01581  52 RFPLKKLLDTLLDLPMVLPPLVAGLALLLLF-GRNGLLGPYLEAAGIQ----VI----FSTLGVVLAQTFVASPYYVRVA 122

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1755237950 202 LAALQLIPADLYEAAKVDGASPWQRFKRITLPLIMPALVVALI 244
Cdd:TIGR01581 123 RSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLV 165
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 157-314 5.80e-06

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 46.99  E-value: 5.80e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 157 GVVNDLLGKIGLpshlawIAEPSLSMW---AVVIADVWKTTPFMALMLLAALQLIPADLYEAAKVDGASPWQRFKRITLP 233
Cdd:PRK09497  128 GYLNEFLLWLGV------IDTPIRIMFtesAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIP 201

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 234 LIMPALVVALIFRVMDSMRIF---DLIyvltsNSEATMSISGYAREQIVSYQDMGMGSAASVLVFMMVAGIAACFIRVAR 310
Cdd:PRK09497  202 LTMPGIIAGCLLVLLPAMGMFyvsDLL-----GGAKNLLIGNVIKSQFLNIRDWPFGAATSITLTIVMGLMLLVYYRASK 276


                  ....
gi 1755237950 311 LNDK 314
Cdd:PRK09497  277 LLNK 280
malG PRK10998
maltose ABC transporter permease MalG;
208-244 6.37e-06

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 47.01  E-value: 6.37e-06
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1755237950 208 IPADLYEAAKVDGASPWQRFKRITLPLIMPALVVALI 244
Cdd:PRK10998  184 IDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFI 220
cysT CHL00187
sulfate transport protein; Provisional
 123-295 1.16e-05

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 45.78  E-value: 1.16e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 123 FRGQGLVRTAILIPWAIPTIVSAKMWGWMFHDQyGVVNDLLGKIGLpshlawiaEPSLSMWAVVIADVWKTTPFMALMLL 202
Cdd:CHL00187   87 FPGKRLLDAAVDLPFALPTSVAGLTLATVYGDN-GWIGHLLSHLGI--------QIVFTKLGVLLAMIFVSFPFVVRTIQ 157

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 203 AALQLIPADLYEAAKVDGASPWQRFKRITLPLIMPALVVALIFRVMDSMRIFDLIYVLTSNseatmsisgyareqiVSYQ 282
Cdd:CHL00187  158 PVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYGSIVIISSN---------------IPFK 222

                         170
                  ....*....|...
gi 1755237950 283 DMgmgsAASVLVF 295
Cdd:CHL00187  223 DL----VASVLIF 231
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 1-240 3.48e-05

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 44.61  E-value: 3.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950   1 MKSDSLTSPPSPRRhnaswhqrRRRVAWGLVLPSLLLLALAAGWPLVRTIWFSFTNAmldapqdyQMVGIANYFArkdgv 80
Cdd:PRK15050    6 RASAAAHAAAARRR--------RRLRPLLWLLLPLLVLAPLVVYPLVRVVLQSLTGE--------HGLGLATYRA----- 64

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950  81 sigVLSDPLWWQAVGNTLWFTFTSVALELLLGMLLALLMNEK-FRGQGLVRTAILIPWAIPTIVSAKMWGWMFHDQyGVV 159
Cdd:PRK15050   65 ---VLGSPDFRGALLTTLQIAFASTAGCLVLGVLLALVLAFVpFPGASLVGRFIDTFVAFPSFLITLAFTFLYGSA-GSV 140

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 160 NDLLgkiglpSHLAWIAEPSL----SMWAVVIADVWKTTPFMALMLLAALQLIPADLYEAAKVDGASPWQRFKRITLPLI 235
Cdd:PRK15050  141 NIAL------QRLFGLEAPPLdflySPGGVILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEA 214


                  ....*
gi 1755237950 236 MPALV 240
Cdd:PRK15050  215 WPALA 219
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
122-245 8.14e-05

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 43.59  E-value: 8.14e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 122 KFRGQGLVRTAILIPWAIPTIVSAKMWGWMFHDQyGVVNDLLGKIGLPSHLAWIAepslsmwaVVIADVWKTTPFMALML 201
Cdd:PRK10971   89 RFPGRTLLDALMDLPFALPTAVAGLTLASLFSVN-GWYGEWLAKFDIKVTYTWLG--------IAVAMAFTSIPFVVRTV 159

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1755237950 202 LAALQLIPADLYEAAKVDGASPWQRFKRITLPLIMPALV--VALIF 245
Cdd:PRK10971  160 QPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLagVALSF 205
COG4986 COG4986
ABC-type anion transport system, duplicated permease component [Inorganic ion transport and ...
 208-240 8.37e-05

ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism];


Pssm-ID: 444010 [Multi-domain]  Cd Length: 576  Bit Score: 44.06  E-value: 8.37e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1755237950 208 IPADLYEAAKVDGASPWQRFKRITLPLIMPALV 240
Cdd:COG4986   159 VPRDLDEAARIFRLSGWQRFWRLELPFAMPGLV 191
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 208-243 5.83e-04

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 40.90  E-value: 5.83e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1755237950 208 IPADLYEAAKVDGASPWQRFKRITLPLIMPALVVAL 243
Cdd:COG0600   151 VDPELLELARSLGASRWQILRKVVLPAALPYIFTGL 186
COG4986 COG4986
ABC-type anion transport system, duplicated permease component [Inorganic ion transport and ...
 208-244 1.09e-03

ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism];


Pssm-ID: 444010 [Multi-domain]  Cd Length: 576  Bit Score: 40.60  E-value: 1.09e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1755237950 208 IPADLYEAAKVDGASPWQRFKRITLPLIMPALVVALI 244
Cdd:COG4986   463 IPNDLREAARNFGLRGWLWWRRLILPGIFPYYVTGAI 499
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
123-244 1.26e-03

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 39.73  E-value: 1.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755237950 123 FRGQGLVRTAILIPWAIPTIVSAKMWgWMFHDQYGVVNDLLGKIGLPSHLAWIAepslsmwaVVIADVWKTTPFMALMLL 202
Cdd:PRK11602   96 FPGRQLLLTLLDIPFAVSPVVAGLVY-LLFYGSNGPLGGWLDEHNLQLMFSWPG--------MVLVTIFVTCPFVVRELV 166

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1755237950 203 AALQLIPADLYEAAKVDGASPWQRFKRITLPLIMPALVVALI 244
Cdd:PRK11602  167 PVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVV 208
modB PRK09421
molybdate ABC transporter permease subunit;
212-244 4.80e-03

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 37.59  E-value: 4.80e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1755237950 212 LYEAAKVDGASPWQRFKRITLPLIMPALVVALI 244
Cdd:PRK09421  122 LEQAARTLGASPWRVFFTITLPLTLPGIIAGTV 154
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 179-240 5.12e-03

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 38.04  E-value: 5.12e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1755237950 179 SLSMWAVVIADVWKTTPFMALMLLAALQLIPADLYEAAKVDGASPWQRFKRITLPLIMPALV 240
Cdd:PRK09500  124 QLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVA 185
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
208-251 8.97e-03

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 37.38  E-value: 8.97e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1755237950 208 IPADLYEAAKVDGASPWQRFKRITLPLIMP--------ALVVALIFRVMDSM 251
Cdd:PRK10952  234 VPADLIEASRSFGASPRQMLFKVQLPLAMPtimagvnqTLMLALSMVVIASM 285
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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