hypothetical protein W433_01252 [Staphylococcus aureus VET0103R]
Protein Classification
lysozyme family protein( domain architecture ID 63)
lysozyme family protein
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| Lyz-like super family | cl00222 | lysozyme-like domains; This family contains several members, including soluble lytic ... |
174-232 | 8.42e-07 | ||
lysozyme-like domains; This family contains several members, including soluble lytic transglycosylases (SLT), goose egg-white lysozymes (GEWL), hen egg-white lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, chitosanases, and pesticin. Typical members are involved in the hydrolysis of beta-1,4- linked polysaccharides. The actual alignment was detected with superfamily member cd13925: Pssm-ID: 469668 [Multi-domain] Cd Length: 71 Bit Score: 45.45 E-value: 8.42e-07
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| Name | Accession | Description | Interval | E-value | ||
| RPF | cd13925 | core lysozyme-like domain of resuscitation-promoting factor proteins; Resuscitation-promoting ... |
174-232 | 8.42e-07 | ||
core lysozyme-like domain of resuscitation-promoting factor proteins; Resuscitation-promoting factor (RPF) proteins, found in various (G+C)-rich Gram-positive bacteria, act to reactivate cultures from stationary phase. This protein shares elements of the structural core of lysozyme and related proteins. Furthermore, it shares a conserved active site glutamate which is required for activity, and has a polysaccharide binding cleft that corresponds to the peptidoglycan binding cleft of lysozyme. Muralytic activity of Rpf in Micrococcus luteus correlates with resuscitation, supporting a mechanism dependent on cleavage of peptidoglycan by RPF. Pssm-ID: 381607 [Multi-domain] Cd Length: 71 Bit Score: 45.45 E-value: 8.42e-07
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| MltE | COG0741 | Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin ... |
166-207 | 4.11e-06 | ||
Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain) [Cell wall/membrane/envelope biogenesis]; Pssm-ID: 440504 [Multi-domain] Cd Length: 244 Bit Score: 46.53 E-value: 4.11e-06
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| SLT | pfam01464 | Transglycosylase SLT domain; This family is distantly related to pfam00062. Members are found ... |
166-204 | 5.67e-05 | ||
Transglycosylase SLT domain; This family is distantly related to pfam00062. Members are found in phages, type II, type III and type IV secretion systems. Pssm-ID: 396169 [Multi-domain] Cd Length: 114 Bit Score: 41.14 E-value: 5.67e-05
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| Name | Accession | Description | Interval | E-value | ||
| RPF | cd13925 | core lysozyme-like domain of resuscitation-promoting factor proteins; Resuscitation-promoting ... |
174-232 | 8.42e-07 | ||
core lysozyme-like domain of resuscitation-promoting factor proteins; Resuscitation-promoting factor (RPF) proteins, found in various (G+C)-rich Gram-positive bacteria, act to reactivate cultures from stationary phase. This protein shares elements of the structural core of lysozyme and related proteins. Furthermore, it shares a conserved active site glutamate which is required for activity, and has a polysaccharide binding cleft that corresponds to the peptidoglycan binding cleft of lysozyme. Muralytic activity of Rpf in Micrococcus luteus correlates with resuscitation, supporting a mechanism dependent on cleavage of peptidoglycan by RPF. Pssm-ID: 381607 [Multi-domain] Cd Length: 71 Bit Score: 45.45 E-value: 8.42e-07
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| MltE | COG0741 | Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin ... |
166-207 | 4.11e-06 | ||
Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain) [Cell wall/membrane/envelope biogenesis]; Pssm-ID: 440504 [Multi-domain] Cd Length: 244 Bit Score: 46.53 E-value: 4.11e-06
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| SLT | pfam01464 | Transglycosylase SLT domain; This family is distantly related to pfam00062. Members are found ... |
166-204 | 5.67e-05 | ||
Transglycosylase SLT domain; This family is distantly related to pfam00062. Members are found in phages, type II, type III and type IV secretion systems. Pssm-ID: 396169 [Multi-domain] Cd Length: 114 Bit Score: 41.14 E-value: 5.67e-05
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| LT-like | cd00254 | lytic transglycosylase(LT)-like domain; Members include the soluble and insoluble ... |
177-207 | 1.74e-04 | ||
lytic transglycosylase(LT)-like domain; Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Pssm-ID: 381594 [Multi-domain] Cd Length: 111 Bit Score: 39.89 E-value: 1.74e-04
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| Lyz-like | cd00442 | lysozyme-like domains; This family contains several members, including soluble lytic ... |
175-221 | 8.46e-04 | ||
lysozyme-like domains; This family contains several members, including soluble lytic transglycosylases (SLT), goose egg-white lysozymes (GEWL), hen egg-white lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, chitosanases, and pesticin. Typical members are involved in the hydrolysis of beta-1,4- linked polysaccharides. Pssm-ID: 381596 [Multi-domain] Cd Length: 59 Bit Score: 36.62 E-value: 8.46e-04
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