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Conserved domains on  [gi|616271319|gb|KAA87662|]
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hypothetical protein W433_01562 [Staphylococcus aureus VET0103R]

Protein Classification

DUF4467 domain-containing protein( domain architecture ID 10631628)

DUF4467 domain-containing protein similar to Bacillus subtilis YddJ

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4467 pfam14729
Domain of unknown function with cystatin-like fold (DUF4467); Large family of predicted ...
 23-117 9.30e-33

Domain of unknown function with cystatin-like fold (DUF4467); Large family of predicted lipoproteins from Gram-positive bacteria Experimentally determined structure shows a cystatitin-like fold, allowing us to classify this family in the NFT2 clan, despite lack of any detectable sequence similarity between members of this family and other families in this clan


:

Pssm-ID: 291399  Cd Length: 94  Bit Score: 110.30  E-value: 9.30e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616271319   23 YVKEIDEAVKIQNQKQEQLAKKGNGDRVDhFERKDANIYVYDKDKIIILAYKPLSNDDEVHYYAYDFSDKRVSYKQGFDS 102
Cdd:pfam14729   1 YQDEIDKVVKIQNQKQQIAAKKGNGDEVD-FKREDANIYVYKDGKYIVIAYKLLKNREETYYYAYEIKDKKAEYNRDINP 79

                          90
                  ....*....|....*
gi 616271319  103 RRYYQQHDADYHEEN 117
Cdd:pfam14729  80 RKYYKDHKPDYEEEN 94
 
Name Accession Description Interval E-value
DUF4467 pfam14729
Domain of unknown function with cystatin-like fold (DUF4467); Large family of predicted ...
 23-117 9.30e-33

Domain of unknown function with cystatin-like fold (DUF4467); Large family of predicted lipoproteins from Gram-positive bacteria Experimentally determined structure shows a cystatitin-like fold, allowing us to classify this family in the NFT2 clan, despite lack of any detectable sequence similarity between members of this family and other families in this clan


Pssm-ID: 291399  Cd Length: 94  Bit Score: 110.30  E-value: 9.30e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616271319   23 YVKEIDEAVKIQNQKQEQLAKKGNGDRVDhFERKDANIYVYDKDKIIILAYKPLSNDDEVHYYAYDFSDKRVSYKQGFDS 102
Cdd:pfam14729   1 YQDEIDKVVKIQNQKQQIAAKKGNGDEVD-FKREDANIYVYKDGKYIVIAYKLLKNREETYYYAYEIKDKKAEYNRDINP 79

                          90
                  ....*....|....*
gi 616271319  103 RRYYQQHDADYHEEN 117
Cdd:pfam14729  80 RKYYKDHKPDYEEEN 94
 
Name Accession Description Interval E-value
DUF4467 pfam14729
Domain of unknown function with cystatin-like fold (DUF4467); Large family of predicted ...
 23-117 9.30e-33

Domain of unknown function with cystatin-like fold (DUF4467); Large family of predicted lipoproteins from Gram-positive bacteria Experimentally determined structure shows a cystatitin-like fold, allowing us to classify this family in the NFT2 clan, despite lack of any detectable sequence similarity between members of this family and other families in this clan


Pssm-ID: 291399  Cd Length: 94  Bit Score: 110.30  E-value: 9.30e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 616271319   23 YVKEIDEAVKIQNQKQEQLAKKGNGDRVDhFERKDANIYVYDKDKIIILAYKPLSNDDEVHYYAYDFSDKRVSYKQGFDS 102
Cdd:pfam14729   1 YQDEIDKVVKIQNQKQQIAAKKGNGDEVD-FKREDANIYVYKDGKYIVIAYKLLKNREETYYYAYEIKDKKAEYNRDINP 79

                          90
                  ....*....|....*
gi 616271319  103 RRYYQQHDADYHEEN 117
Cdd:pfam14729  80 RKYYKDHKPDYEEEN 94
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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