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Conserved domains on  [gi|1748160739|gb|KAA6417856|]
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MAG: 40S ribosomal S15a-1-like [Trebouxia sp. A1-2]

Protein Classification

uS8 family ribosomal protein( domain architecture ID 10015251)

uS8 family ribosomal protein is a component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell, such as mammalian 40S ribosomal protein S15a and fungal 40S ribosomal protein S22

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00158 PTZ00158
40S ribosomal protein S15A; Provisional
 1-130 4.07e-86

40S ribosomal protein S15A; Provisional


:

Pssm-ID: 185487  Cd Length: 130  Bit Score: 246.94  E-value: 4.07e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1748160739   1 MVRISVLHDALKTMYNAEKRGKRQVLIRPSSKVVIKFLQVMMKHGYIGEFEYVDDHRGGKIVVELNGRLNKCGVISPRYD 80
Cdd:PTZ00158    1 MVRMSVLADCLRSIVNAEKQGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRSGKIVVNLNGRLNKCGVISPRFD 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1748160739  81 VNHGEIEAWVARLLPSRLFGKIILTTSVGIMDHEEARRKKMGGKVLGFFY 130
Cdd:PTZ00158   81 VTLGEFEKWANNILPSRQFGHVVLTTSYGIMDHEEARRRHTGGKILGFFY 130
 
Name Accession Description Interval E-value
PTZ00158 PTZ00158
40S ribosomal protein S15A; Provisional
 1-130 4.07e-86

40S ribosomal protein S15A; Provisional


Pssm-ID: 185487  Cd Length: 130  Bit Score: 246.94  E-value: 4.07e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1748160739   1 MVRISVLHDALKTMYNAEKRGKRQVLIRPSSKVVIKFLQVMMKHGYIGEFEYVDDHRGGKIVVELNGRLNKCGVISPRYD 80
Cdd:PTZ00158    1 MVRMSVLADCLRSIVNAEKQGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRSGKIVVNLNGRLNKCGVISPRFD 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1748160739  81 VNHGEIEAWVARLLPSRLFGKIILTTSVGIMDHEEARRKKMGGKVLGFFY 130
Cdd:PTZ00158   81 VTLGEFEKWANNILPSRQFGHVVLTTSYGIMDHEEARRRHTGGKILGFFY 130
RpsH COG0096
Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S8 ...
 1-130 7.89e-32

Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S8 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439866  Cd Length: 132  Bit Score: 109.35  E-value: 7.89e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1748160739   1 MVRISVLHDALKTMYNAEKRGKRQVLIrPSSKVVIKFLQVMMKHGYIGEFEYVDDHRGGKIVVELNGRLNKCGVISPRYD 80
Cdd:COG0096     1 MSMTDPIADMLTRIRNAQMAGKKEVDV-PASKLKGAILKVLKEEGYIKDFEVIEDGKKGKLRVELKYGINGEPVIKGIKR 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1748160739  81 VNHGEIE---AWVARLLPSRLFGKIILTTSVGIMDHEEARRKKMGGKVLGFFY 130
Cdd:COG0096    80 VSKPGLRvyvKKEELPRVLNGLGIAIVSTSKGVMTDKEARKKGVGGEVLCYVW 132
Ribosomal_S8 pfam00410
Ribosomal protein S8;
9-130 2.84e-23

Ribosomal protein S8;


Pssm-ID: 425667  Cd Length: 127  Bit Score: 87.46  E-value: 2.84e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1748160739   9 DALKTMYNAEKRGKRQVLIrPSSKVVIKFLQVMMKHGYIGEFEYVDDHRGGKIVVELngRLNK-CGVIS-------P--R 78
Cdd:pfam00410   5 DMLTRIRNANMAGHEEVDI-PASKLKGAILKILKEEGYIKDFEVEEDEDKKGIRITL--KYNKgEPVIKglkriskPglR 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1748160739  79 YDVNHGEIeawvarllPSRL--FGKIILTTSVGIMDHEEARRKKMGGKVLGFFY 130
Cdd:pfam00410  82 VYVGKDEL--------PRVLngLGIAILSTSKGVMTDKEARKKGVGGEVLCYVW 127
 
Name Accession Description Interval E-value
PTZ00158 PTZ00158
40S ribosomal protein S15A; Provisional
 1-130 4.07e-86

40S ribosomal protein S15A; Provisional


Pssm-ID: 185487  Cd Length: 130  Bit Score: 246.94  E-value: 4.07e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1748160739   1 MVRISVLHDALKTMYNAEKRGKRQVLIRPSSKVVIKFLQVMMKHGYIGEFEYVDDHRGGKIVVELNGRLNKCGVISPRYD 80
Cdd:PTZ00158    1 MVRMSVLADCLRSIVNAEKQGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRSGKIVVNLNGRLNKCGVISPRFD 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1748160739  81 VNHGEIEAWVARLLPSRLFGKIILTTSVGIMDHEEARRKKMGGKVLGFFY 130
Cdd:PTZ00158   81 VTLGEFEKWANNILPSRQFGHVVLTTSYGIMDHEEARRRHTGGKILGFFY 130
PLN00146 PLN00146
40S ribosomal protein S15a; Provisional
 1-130 8.65e-86

40S ribosomal protein S15a; Provisional


Pssm-ID: 215075  Cd Length: 130  Bit Score: 246.06  E-value: 8.65e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1748160739   1 MVRISVLHDALKTMYNAEKRGKRQVLIRPSSKVVIKFLQVMMKHGYIGEFEYVDDHRGGKIVVELNGRLNKCGVISPRYD 80
Cdd:PLN00146    1 MVRRSVLNDALKTMYNAEKRGKRQVLIRPSSKVVIKFLKVMQKHGYIGEFEVVDDHRSGKIVVELNGRLNKCGVISPRFD 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1748160739  81 VNHGEIEAWVARLLPSRLFGKIILTTSVGIMDHEEARRKKMGGKVLGFFY 130
Cdd:PLN00146   81 VKVKEIEAWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
rps8p PRK04034
30S ribosomal protein S8P; Reviewed
 1-130 2.79e-61

30S ribosomal protein S8P; Reviewed


Pssm-ID: 179721  Cd Length: 130  Bit Score: 183.89  E-value: 2.79e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1748160739   1 MVRISVLHDALKTMYNAEKRGKRQVLIRPSSKVVIKFLQVMMKHGYIGEFEYVDDHRGGKIVVELNGRLNKCGVISPRYD 80
Cdd:PRK04034    1 MVLLDPLANALSTIKNAEMVGKKEVIIKPASKLIGNVLRVMQDEGYIGEFEYIDDGRAGKFKVELLGRINKCGAIKPRYP 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1748160739  81 VNHGEIEAWVARLLPSRLFGKIILTTSVGIMDHEEARRKKMGGKVLGFFY 130
Cdd:PRK04034   81 VKYDEFEKWEKRYLPARDFGILIVSTSKGVMSHKEAREKGIGGVLLAYVY 130
RpsH COG0096
Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S8 ...
 1-130 7.89e-32

Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S8 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439866  Cd Length: 132  Bit Score: 109.35  E-value: 7.89e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1748160739   1 MVRISVLHDALKTMYNAEKRGKRQVLIrPSSKVVIKFLQVMMKHGYIGEFEYVDDHRGGKIVVELNGRLNKCGVISPRYD 80
Cdd:COG0096     1 MSMTDPIADMLTRIRNAQMAGKKEVDV-PASKLKGAILKVLKEEGYIKDFEVIEDGKKGKLRVELKYGINGEPVIKGIKR 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1748160739  81 VNHGEIE---AWVARLLPSRLFGKIILTTSVGIMDHEEARRKKMGGKVLGFFY 130
Cdd:COG0096    80 VSKPGLRvyvKKEELPRVLNGLGIAIVSTSKGVMTDKEARKKGVGGEVLCYVW 132
Ribosomal_S8 pfam00410
Ribosomal protein S8;
9-130 2.84e-23

Ribosomal protein S8;


Pssm-ID: 425667  Cd Length: 127  Bit Score: 87.46  E-value: 2.84e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1748160739   9 DALKTMYNAEKRGKRQVLIrPSSKVVIKFLQVMMKHGYIGEFEYVDDHRGGKIVVELngRLNK-CGVIS-------P--R 78
Cdd:pfam00410   5 DMLTRIRNANMAGHEEVDI-PASKLKGAILKILKEEGYIKDFEVEEDEDKKGIRITL--KYNKgEPVIKglkriskPglR 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1748160739  79 YDVNHGEIeawvarllPSRL--FGKIILTTSVGIMDHEEARRKKMGGKVLGFFY 130
Cdd:pfam00410  82 VYVGKDEL--------PRVLngLGIAILSTSKGVMTDKEARKKGVGGEVLCYVW 127
rpsH PRK00136
30S ribosomal protein S8; Validated
 16-126 4.08e-13

30S ribosomal protein S8; Validated


Pssm-ID: 234658  Cd Length: 130  Bit Score: 61.22  E-value: 4.08e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1748160739  16 NAEKRGKRQVLIrPSSKVVIKFLQVMMKHGYIGEFEYVDDHRGGKIVVEL---------NG--RLNKCGVispRYDVNHG 84
Cdd:PRK00136   15 NAQMAKHETVSM-PASKLKVAIAEILKEEGYIKDYEVEEDGKQGILRITLkygegepviEGikRVSKPGL---RVYKKKD 90

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1748160739  85 EIeawvarllPSRL--FGKIILTTSVGIMDHEEARRKKMGGKVL 126
Cdd:PRK00136   91 EL--------PKVLngLGIAIVSTSKGVMTDREARKAGVGGEVL 126
rps8 CHL00042
ribosomal protein S8
 16-126 1.59e-08

ribosomal protein S8


Pssm-ID: 214344  Cd Length: 132  Bit Score: 49.40  E-value: 1.59e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1748160739  16 NAEKRGKRQVLIrPSSKVVIKFLQVMMKHGYIGEFEYVDDHRGGKIVVELNGRLNKCGV-------IS-P--RYDVNHGE 85
Cdd:CHL00042   15 NANMVKKGTVRI-PATNITENIVKILLREGFIENVREHRENNKYFLVLTLKYRGNKKKPyittlkrISkPglRIYSNYKE 93

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1748160739  86 IeawvarllPSRL--FGKIILTTSVGIMDHEEARRKKMGGKVL 126
Cdd:CHL00042   94 I--------PRVLggMGIVILSTSKGIMTDREARLKGIGGEIL 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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