|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
248-492 |
7.15e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 48.08 E-value: 7.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 248 LAEANTLLGKLFFNRQVLDKALDHFSQAadfygrYEQSPFLPKVLKQMGDIYYQQGKYNLALVHYFNVIDHQNNNAplsd 327
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIEDYEKA------LELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDA---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 328 eiEIRINLAATYLQLYNYPIAEQYLTSAEALlsvtnipRLNGHAALLHSGLSYY-QNINQEIVHYAEMALQIgesiqdDY 406
Cdd:COG0457 77 --EALNNLGLALQALGRYEEALEDYDKALEL-------DPDDAEALYNLGLALLeLGRYDEAIEAYERALEL------DP 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 407 LQEQAYRLLSLGYEKTGTPTKALEYFKKSQALAQKRQNKLNQISEDAFRQQREFIEQTLHLVGQEKQLQETEIQHRQLRK 486
Cdd:COG0457 142 DDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAE 221
|
....*.
gi 1743118926 487 IAFFLL 492
Cdd:COG0457 222 LLLLAL 227
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
81-355 |
5.05e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 45.88 E-value: 5.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 81 STVDAMMILAQALYNLGETEQAQSVLNEAKTLSERYQLPYLLLdVQILstrLAWQSDNDALAARERLRKIAEQykviena 160
Cdd:COG2956 40 ETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLEL-AQDY---LKAGLLDRAEELLEKLLELDPD------- 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 161 dqiakgiDYKLTLLRAEIASKANDIELADKLFAQAkpyvdtLQNAKPAIEYHLKLGEHNLSHERYNLALSELLiaywSAI 240
Cdd:COG2956 109 -------DAEALRLLAEIYEQEGDWEKAIEVLERL------LKLGPENAHAYCELAELYLEQGDYDEAIEALE----KAL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 241 ESNSGvlLAEANTLLGKLFFNRQVLDKALDHFSQAadfygrYEQSPFLPKVLKQMGDIYYQQGKYNLALVHYFNVIDHQN 320
Cdd:COG2956 172 KLDPD--CARALLLLAELYLEQGDYEEAIAALERA------LEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243
|
250 260 270
....*....|....*....|....*....|....*
gi 1743118926 321 NNAPLsdeieirINLAATYLQLYNYPIAEQYLTSA 355
Cdd:COG2956 244 SDDLL-------LALADLLERKEGLEAALALLERQ 271
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
89-342 |
6.02e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 43.53 E-value: 6.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 89 LAQALYNLGETEQAQSVLNEAKTLSERYQLPYLLLdvqiLSTRLAWQSDNDALAARERLRKIAEQ----YKVIENADQIA 164
Cdd:TIGR02917 573 LAQYYLGKGQLKKALAILNEAADAAPDSPEAWLML----GRAQLAAGDLNKAVSSFKKLLALQPDsalaLLLLADAYAVM 648
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 165 KGIDYKLTLLRAEIASKAND---------IELADKLFAQAKPYVDTLQNAKP-AIEYHLKLGEHNLSHERYNLALSELLI 234
Cdd:TIGR02917 649 KNYAKAITSLKRALELKPDNteaqiglaqLLLAAKRTESAKKIAKSLQKQHPkAALGFELEGDLYLRQKDYPAAIQAYRK 728
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 235 AYWSAIESNSGVLLAEA---------------------------NTLLGKLFFNRQVLDKALDHFSQ------------- 274
Cdd:TIGR02917 729 ALKRAPSSQNAIKLHRAllasgntaeavktleawlkthpndavlRTALAELYLAQKDYDKAIKHYQTvvkkapdnavvln 808
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 275 -AADFYGR-------------YEQSPFLPKVLKQMGDIYYQQGKYNLALVHYFNVIDHQNNNAplsdeiEIRINLAATYL 340
Cdd:TIGR02917 809 nLAWLYLElkdpraleyaeraLKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAA------AIRYHLALALL 882
|
..
gi 1743118926 341 QL 342
Cdd:TIGR02917 883 AT 884
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
248-492 |
7.15e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 48.08 E-value: 7.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 248 LAEANTLLGKLFFNRQVLDKALDHFSQAadfygrYEQSPFLPKVLKQMGDIYYQQGKYNLALVHYFNVIDHQNNNAplsd 327
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIEDYEKA------LELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDA---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 328 eiEIRINLAATYLQLYNYPIAEQYLTSAEALlsvtnipRLNGHAALLHSGLSYY-QNINQEIVHYAEMALQIgesiqdDY 406
Cdd:COG0457 77 --EALNNLGLALQALGRYEEALEDYDKALEL-------DPDDAEALYNLGLALLeLGRYDEAIEAYERALEL------DP 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 407 LQEQAYRLLSLGYEKTGTPTKALEYFKKSQALAQKRQNKLNQISEDAFRQQREFIEQTLHLVGQEKQLQETEIQHRQLRK 486
Cdd:COG0457 142 DDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAE 221
|
....*.
gi 1743118926 487 IAFFLL 492
Cdd:COG0457 222 LLLLAL 227
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
173-439 |
8.23e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 48.19 E-value: 8.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 173 LLRAEIASKANDIELADKLFAQAkpyvdtLQNAKPAIEYHLKLGEHNLSHERYNLALSELLiaywSAIESNSGvlLAEAN 252
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEA------LELDPETVEAHLALGNLYRRRGEYDRAIRIHQ----KLLERDPD--RAEAL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 253 TLLGKLFFNRQVLDKALDHFSQAAdfygryEQSPFLPKVLKQMGDIYYQQGKYNLALVHYFNVIDHQNNNAplsdeiEIR 332
Cdd:COG2956 80 LELAQDYLKAGLLDRAEELLEKLL------ELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENA------HAY 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 333 INLAATYLQLYNYPIAEQYLTSAEALLSvtniprlNGHAALLHSGLSYYQNINQEivhYAEMALQIGESIQDDYLQeqAY 412
Cdd:COG2956 148 CELAELYLEQGDYDEAIEALEKALKLDP-------DCARALLLLAELYLEQGDYE---EAIAALERALEQDPDYLP--AL 215
|
250 260
....*....|....*....|....*..
gi 1743118926 413 RLLSLGYEKTGTPTKALEYFKKSQALA 439
Cdd:COG2956 216 PRLAELYEKLGDPEEALELLRKALELD 242
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
81-355 |
5.05e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 45.88 E-value: 5.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 81 STVDAMMILAQALYNLGETEQAQSVLNEAKTLSERYQLPYLLLdVQILstrLAWQSDNDALAARERLRKIAEQykviena 160
Cdd:COG2956 40 ETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLEL-AQDY---LKAGLLDRAEELLEKLLELDPD------- 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 161 dqiakgiDYKLTLLRAEIASKANDIELADKLFAQAkpyvdtLQNAKPAIEYHLKLGEHNLSHERYNLALSELLiaywSAI 240
Cdd:COG2956 109 -------DAEALRLLAEIYEQEGDWEKAIEVLERL------LKLGPENAHAYCELAELYLEQGDYDEAIEALE----KAL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 241 ESNSGvlLAEANTLLGKLFFNRQVLDKALDHFSQAadfygrYEQSPFLPKVLKQMGDIYYQQGKYNLALVHYFNVIDHQN 320
Cdd:COG2956 172 KLDPD--CARALLLLAELYLEQGDYEEAIAALERA------LEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243
|
250 260 270
....*....|....*....|....*....|....*
gi 1743118926 321 NNAPLsdeieirINLAATYLQLYNYPIAEQYLTSA 355
Cdd:COG2956 244 SDDLL-------LALADLLERKEGLEAALALLERQ 271
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
266-353 |
3.19e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 40.75 E-value: 3.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 266 DKALDHFSQaadFYGRYEQSPFLPKVLKQMGDIYYQQGKYNLALVHYFNVIDHQNNNAPLSDeieIRINLAATYLQLYNY 345
Cdd:COG1729 10 DEAIAAFKA---FLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPD---ALLKLGLSYLELGDY 83
|
....*...
gi 1743118926 346 PIAEQYLT 353
Cdd:COG1729 84 DKARATLE 91
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
247-317 |
4.14e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 40.36 E-value: 4.14e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1743118926 247 LLAEANTLLGKLFFNRQVLDKALDHFSQAADfygRYEQSPFLPKVLKQMGDIYYQQGKYNLALVHYFNVID 317
Cdd:COG1729 28 LAPDALYWLGEAYYALGDYDEAAEAFEKLLK---RYPDSPKAPDALLKLGLSYLELGDYDKARATLEELIK 95
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
89-342 |
6.02e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 43.53 E-value: 6.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 89 LAQALYNLGETEQAQSVLNEAKTLSERYQLPYLLLdvqiLSTRLAWQSDNDALAARERLRKIAEQ----YKVIENADQIA 164
Cdd:TIGR02917 573 LAQYYLGKGQLKKALAILNEAADAAPDSPEAWLML----GRAQLAAGDLNKAVSSFKKLLALQPDsalaLLLLADAYAVM 648
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 165 KGIDYKLTLLRAEIASKAND---------IELADKLFAQAKPYVDTLQNAKP-AIEYHLKLGEHNLSHERYNLALSELLI 234
Cdd:TIGR02917 649 KNYAKAITSLKRALELKPDNteaqiglaqLLLAAKRTESAKKIAKSLQKQHPkAALGFELEGDLYLRQKDYPAAIQAYRK 728
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 235 AYWSAIESNSGVLLAEA---------------------------NTLLGKLFFNRQVLDKALDHFSQ------------- 274
Cdd:TIGR02917 729 ALKRAPSSQNAIKLHRAllasgntaeavktleawlkthpndavlRTALAELYLAQKDYDKAIKHYQTvvkkapdnavvln 808
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 275 -AADFYGR-------------YEQSPFLPKVLKQMGDIYYQQGKYNLALVHYFNVIDHQNNNAplsdeiEIRINLAATYL 340
Cdd:TIGR02917 809 nLAWLYLElkdpraleyaeraLKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAA------AIRYHLALALL 882
|
..
gi 1743118926 341 QL 342
Cdd:TIGR02917 883 AT 884
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
249-358 |
8.17e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 40.18 E-value: 8.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 249 AEANTLLGKLFFNRQVLDKALDHFSQAadfygrYEQSPFLPKVLKQMGDIYYQQGKYNLALVHYFNVIDHQNNNAplsde 328
Cdd:COG4783 38 PEAFALLGEILLQLGDLDEAIVLLHEA------LELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHP----- 106
|
90 100 110
....*....|....*....|....*....|
gi 1743118926 329 iEIRINLAATYLQLYNYPIAEQYLTSAEAL 358
Cdd:COG4783 107 -EAYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
246-441 |
8.79e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 42.02 E-value: 8.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 246 VLLAEANTLLGKLFFNRQVLDKALDHFSQAAdfygryEQSPFLPKVLKQMGDIYYQQGKYNLALVHYFNVIDHQNNNApl 325
Cdd:COG2956 5 VAAALGWYFKGLNYLLNGQPDKAIDLLEEAL------ELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRA-- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 326 sdeiEIRINLAATYLQLYNYPIAEQYLTSAEALlsvtnipRLNGHAALLHSGLSYYQNIN-QEIVHYAEMALQIGESiqd 404
Cdd:COG2956 77 ----EALLELAQDYLKAGLLDRAEELLEKLLEL-------DPDDAEALRLLAEIYEQEGDwEKAIEVLERLLKLGPE--- 142
|
170 180 190
....*....|....*....|....*....|....*..
gi 1743118926 405 dylQEQAYRLLSLGYEKTGTPTKALEYFKKSQALAQK 441
Cdd:COG2956 143 ---NAHAYCELAELYLEQGDYDEAIEALEKALKLDPD 176
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
224-471 |
3.20e-03 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 40.75 E-value: 3.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 224 RYNLALSELLIAYWSAIESNSGVLLAEANTLLGKLFFNRQVLDKALDHFSQAADFYGRYEQSPFLPKVLKQMGDIYYQQG 303
Cdd:COG3914 13 AAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 304 KYNLALVHYFNVIDHQNNNAplsdeiEIRINLAATYLQLYNYPIAEQYLTSAEALlsvtnIPRLngHAALLHSGLSYY-Q 382
Cdd:COG3914 93 RYEEALALYRRALALNPDNA------EALFNLGNLLLALGRLEEALAALRRALAL-----NPDF--AEAYLNLGEALRrL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 383 NINQEIVHYAEMALQigesIQDDYLqeQAYRLLSLGYEKTGTPTKALEYFKKSQALAQK----RQNKLNQISEDAFRQQR 458
Cdd:COG3914 160 GRLEEAIAALRRALE----LDPDNA--EALNNLGNALQDLGRLEEAIAAYRRALELDPDnadaHSNLLFALRQACDWEVY 233
|
250
....*....|...
gi 1743118926 459 EFIEQTLHLVGQE 471
Cdd:COG3914 234 DRFEELLAALARG 246
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
42-358 |
4.89e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 40.45 E-value: 4.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 42 QARKMAQQYLNDRH-LA--EKQEKHPAtIARDEAESRTRTPGSTVDAMMILAQALYNLGETEQAQSVLNEAKTLSERYQL 118
Cdd:TIGR02917 490 KALSIEPDFFPAAAnLAriDIQEGNPD-DAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIE 568
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 119 PYLLLDV------------QILSTRLAWQSDNDAL---------------AARERLRKIAEQ-------YKVIENADQIA 164
Cdd:TIGR02917 569 PALALAQyylgkgqlkkalAILNEAADAAPDSPEAwlmlgraqlaagdlnKAVSSFKKLLALqpdsalaLLLLADAYAVM 648
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 165 KGIDYKLTLLRAEIASKAND---------IELADKLFAQAKPYVDTLQNAKP-AIEYHLKLGEHNLSHERYNLALSELLI 234
Cdd:TIGR02917 649 KNYAKAITSLKRALELKPDNteaqiglaqLLLAAKRTESAKKIAKSLQKQHPkAALGFELEGDLYLRQKDYPAAIQAYRK 728
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 235 AYWSAIESNSGVLLAEANTLLGKlffNRQVLDKALDHFSQAADFYgryeqspflpKVLKQMGDIYYQQGKYNLALVHYFN 314
Cdd:TIGR02917 729 ALKRAPSSQNAIKLHRALLASGN---TAEAVKTLEAWLKTHPNDA----------VLRTALAELYLAQKDYDKAIKHYQT 795
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1743118926 315 VIDHQNNNAPLSDeieiriNLAATYLQLYNyPIAEQYLTSAEAL 358
Cdd:TIGR02917 796 VVKKAPDNAVVLN------NLAWLYLELKD-PRALEYAERALKL 832
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
249-358 |
7.19e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 37.48 E-value: 7.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 249 AEANTLLGKLFFNRQVLDKALDHFSQAadfygrYEQSPFLPKVLKQMGDIYYQQGKYNLALVHYFNVIDHQNNNAplsde 328
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKA------LELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEP----- 72
|
90 100 110
....*....|....*....|....*....|
gi 1743118926 329 iEIRINLAATYLQLYNYPIAEQYLTSAEAL 358
Cdd:COG4783 73 -EARLNLGLALLKAGDYDEALALLEKALKL 101
|
|
| COG4995 |
COG4995 |
Uncharacterized conserved protein, contains CHAT domain [Function unknown]; |
84-513 |
9.17e-03 |
|
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
Pssm-ID: 444019 [Multi-domain] Cd Length: 711 Bit Score: 39.57 E-value: 9.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 84 DAMMILAQALYNLGETEQAQSVLNEAKTLSERYQLPYLLLDVQILSTRLAWQSDNDALAARERLRKIAEQYKVIENADQI 163
Cdd:COG4995 24 LALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALALALLAAALALALAAAAL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 164 AKGIDYKLTLLRAEIASKANDIELADKLFAQAKPYVDTLQNAKPAIEYHLKLGEHNLSHERYNLALSELLIAYWSAIESN 243
Cdd:COG4995 104 AALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLALALALAAAALALLALL 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 244 SGVLLAEANTLLGKLFFNRQVLDKALDHFSQAADFYGRYEQSPFLPKVLKQMGDIYYQQGKYNLALVHYFNVIDHQNNNA 323
Cdd:COG4995 184 LAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAAALLALLLLALLALAAAAAALAAAAAALLALAAA 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 324 PLSDEIEIRINLAATYLQLYNYPIAEQYLTSAEALLSVTNIPRLNGHAALLHSGLSYYQNINQEIVHYAEMALQIGESIQ 403
Cdd:COG4995 264 LLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLLLLAALALLALLLLLAAAA 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743118926 404 DDYLQEQAYRLLSLGYEKTGTPTKALEYFKKSQALAQKRQNKLNQISEDAFRQQREFIEQTLHLVGQEKQLQETEIQHRQ 483
Cdd:COG4995 344 LLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAAAQLLRLLLAALALLLALA 423
|
410 420 430
....*....|....*....|....*....|
gi 1743118926 484 LRKIAFFLLVICLVFFMINLRRGYLVQRYQ 513
Cdd:COG4995 424 AYAAARLALLALIEYIILPDRLYAFVQLYQ 453
|
|
| |
