|
Name |
Accession |
Description |
Interval |
E-value |
| NB-ARC super family |
cl26397 |
NB-ARC domain; |
171-416 |
5.02e-32 |
|
NB-ARC domain;
The actual alignment was detected with superfamily member pfam00931:
Pssm-ID: 395745 [Multi-domain] Cd Length: 245 Bit Score: 125.57 E-value: 5.02e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 171 RKNDVSKVVDLLVNPKDEQIVSvvpIVGMAGLGKTALAKLVYND-SNVATHFDVKFWVCVSEHFDVKRILKEMLE--HFT 247
Cdd:pfam00931 1 REDMVEKVIGKLSEKDEPGIVG---IHGMGGVGKTTLAAQIFNDfDEVEGHFDSVAWVVVSKTFTISTLQQTILQnlGLS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 248 DDQISIPQNMNamvkkLKEKIEGAKREKdqiKYLLVLDDVWSFEKWDALKDHLmeisKNGGNG--VIVTTRIQDVASKVQ 325
Cdd:pfam00931 78 EDDWDNKEEGE-----LARKIRRALLTK---RFLLVLDDVWDEEDWDKIGIPL----PDRENGcrVLLTTRSEEVAGRVG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 326 AlPNQRHQPGRLGDEECWSLIKQQALRASPVSHE-LELIGNEIAKQCQGVALVAKLMGGIMRK---IERSPRAWSKIQR- 400
Cdd:pfam00931 146 G-PSDPHEVELLEPDEAWELFENKVFPKTLGECElLEDVAKEIVEKCRGLPLALKVLGGLLSCkktVEEWKHVYDVLQSe 224
|
250 260
....*....|....*....|
gi 1743066850 401 ----SDAWGSMERVLKLSFD 416
Cdd:pfam00931 225 lksnSYSLNSVRSILQLSYE 244
|
|
| Rx_N |
pfam18052 |
Rx N-terminal domain; This entry represents the N-terminal domain found in many plant ... |
9-101 |
2.27e-29 |
|
Rx N-terminal domain; This entry represents the N-terminal domain found in many plant resistance proteins. This domain has been predicted to be a coiled-coil, however the structure shows that it adopts a four helical bundle fold.
:
Pssm-ID: 436239 Cd Length: 93 Bit Score: 112.75 E-value: 2.27e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 9 VLEEVVSKLISIAAEQISLALGFKKDLKRLGDSLQMIKAFFQDAEERQTKDEAVKVWLQRLKDVAYEADDVLDEFAYEIL 88
Cdd:pfam18052 1 AVSSLLEKLGSLLAEEAKLLKGVKDDLEKLKDELESIQAFLEDAERKQITDEQVKLWLKQLRDVAYDAEDVLDEFLYEAL 80
|
90
....*....|...
gi 1743066850 89 RRKVEIRYQIRRR 101
Cdd:pfam18052 81 RRKSSPKKLKFRH 93
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
868-1129 |
7.39e-18 |
|
Leucine-rich repeat (LRR) protein [Transcription];
:
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 87.68 E-value: 7.39e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 868 LKRLKIWVCPLLKSVPLTGQCYSLEKLRISHCeKLSKIGDGLSTSTCLKELVLEDCPTLSLIPNLKRFSSLQYLSVESCd 947
Cdd:COG4886 92 LGDLTNLTELDLSGNEELSNLTNLESLDLSGN-QLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNN- 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 948 KLEVLPIT-GGCSSLEKLRISScekcNKLEVLPIT-GGCSSLEKLCISSCeKLSKIRDGLSTSTCLKELDLEDCpNLSSI 1025
Cdd:COG4886 170 QLTDLPEElGNLTNLKELDLSN----NQITDLPEPlGNLTNLEELDLSGN-QLTDLPEPLANLTNLETLDLSNN-QLTDL 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 1026 PNLEGFSSLQYLLVDGCdKLESFPLKAPLSSLKKLMIRDCP----HLKPIPSLDGLSSLIELEFKKVGEEWSRLLPNMLQ 1101
Cdd:COG4886 244 PELGNLTNLEELDLSNN-QLTDLPPLANLTNLKTLDLSNNQltdlKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTT 322
|
250 260
....*....|....*....|....*...
gi 1743066850 1102 SNVSLCSLTILNLPDPTWIQDESLDWLN 1129
Cdd:COG4886 323 LLLLLLLLKGLLVTLTTLALSLSLLALL 350
|
|
| LRR super family |
cl34836 |
Leucine-rich repeat (LRR) protein [Transcription]; |
565-663 |
5.50e-04 |
|
Leucine-rich repeat (LRR) protein [Transcription];
The actual alignment was detected with superfamily member COG4886:
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 44.15 E-value: 5.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 565 SFTRLRVLKFVGAaNICELPDSLGELKHLRYLDISRTTIVALPKSTTKLYNLQTLRLLGLLRLTFPDGLEKLISLKHLYF 644
Cdd:COG4886 111 NLTNLESLDLSGN-QLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTNLKELDL 189
|
90 100
....*....|....*....|.
gi 1743066850 645 DRKELQ--PVNIGNLTCLQTL 663
Cdd:COG4886 190 SNNQITdlPEPLGNLTNLEEL 210
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| NB-ARC |
pfam00931 |
NB-ARC domain; |
171-416 |
5.02e-32 |
|
NB-ARC domain;
Pssm-ID: 395745 [Multi-domain] Cd Length: 245 Bit Score: 125.57 E-value: 5.02e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 171 RKNDVSKVVDLLVNPKDEQIVSvvpIVGMAGLGKTALAKLVYND-SNVATHFDVKFWVCVSEHFDVKRILKEMLE--HFT 247
Cdd:pfam00931 1 REDMVEKVIGKLSEKDEPGIVG---IHGMGGVGKTTLAAQIFNDfDEVEGHFDSVAWVVVSKTFTISTLQQTILQnlGLS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 248 DDQISIPQNMNamvkkLKEKIEGAKREKdqiKYLLVLDDVWSFEKWDALKDHLmeisKNGGNG--VIVTTRIQDVASKVQ 325
Cdd:pfam00931 78 EDDWDNKEEGE-----LARKIRRALLTK---RFLLVLDDVWDEEDWDKIGIPL----PDRENGcrVLLTTRSEEVAGRVG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 326 AlPNQRHQPGRLGDEECWSLIKQQALRASPVSHE-LELIGNEIAKQCQGVALVAKLMGGIMRK---IERSPRAWSKIQR- 400
Cdd:pfam00931 146 G-PSDPHEVELLEPDEAWELFENKVFPKTLGECElLEDVAKEIVEKCRGLPLALKVLGGLLSCkktVEEWKHVYDVLQSe 224
|
250 260
....*....|....*....|
gi 1743066850 401 ----SDAWGSMERVLKLSFD 416
Cdd:pfam00931 225 lksnSYSLNSVRSILQLSYE 244
|
|
| Rx_N |
pfam18052 |
Rx N-terminal domain; This entry represents the N-terminal domain found in many plant ... |
9-101 |
2.27e-29 |
|
Rx N-terminal domain; This entry represents the N-terminal domain found in many plant resistance proteins. This domain has been predicted to be a coiled-coil, however the structure shows that it adopts a four helical bundle fold.
Pssm-ID: 436239 Cd Length: 93 Bit Score: 112.75 E-value: 2.27e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 9 VLEEVVSKLISIAAEQISLALGFKKDLKRLGDSLQMIKAFFQDAEERQTKDEAVKVWLQRLKDVAYEADDVLDEFAYEIL 88
Cdd:pfam18052 1 AVSSLLEKLGSLLAEEAKLLKGVKDDLEKLKDELESIQAFLEDAERKQITDEQVKLWLKQLRDVAYDAEDVLDEFLYEAL 80
|
90
....*....|...
gi 1743066850 89 RRKVEIRYQIRRR 101
Cdd:pfam18052 81 RRKSSPKKLKFRH 93
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
868-1129 |
7.39e-18 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 87.68 E-value: 7.39e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 868 LKRLKIWVCPLLKSVPLTGQCYSLEKLRISHCeKLSKIGDGLSTSTCLKELVLEDCPTLSLIPNLKRFSSLQYLSVESCd 947
Cdd:COG4886 92 LGDLTNLTELDLSGNEELSNLTNLESLDLSGN-QLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNN- 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 948 KLEVLPIT-GGCSSLEKLRISScekcNKLEVLPIT-GGCSSLEKLCISSCeKLSKIRDGLSTSTCLKELDLEDCpNLSSI 1025
Cdd:COG4886 170 QLTDLPEElGNLTNLKELDLSN----NQITDLPEPlGNLTNLEELDLSGN-QLTDLPEPLANLTNLETLDLSNN-QLTDL 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 1026 PNLEGFSSLQYLLVDGCdKLESFPLKAPLSSLKKLMIRDCP----HLKPIPSLDGLSSLIELEFKKVGEEWSRLLPNMLQ 1101
Cdd:COG4886 244 PELGNLTNLEELDLSNN-QLTDLPPLANLTNLKTLDLSNNQltdlKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTT 322
|
250 260
....*....|....*....|....*...
gi 1743066850 1102 SNVSLCSLTILNLPDPTWIQDESLDWLN 1129
Cdd:COG4886 323 LLLLLLLLKGLLVTLTTLALSLSLLALL 350
|
|
| RX-CC_like |
cd14798 |
Coiled-coil domain of the potato virux X resistance protein and similar proteins; The potato ... |
13-132 |
8.96e-18 |
|
Coiled-coil domain of the potato virux X resistance protein and similar proteins; The potato virus X resistance protein (RX) confers resistance against potato virus X. It is a member of a family of resistance proteins with a domain architecture that includes an N-terminal coiled-coil domain (modeled here), a nucleotide-binding domain, and leucine-rich repeats (CC-NB-LRR). These intracellular resistance proteins recognize pathogen effector proteins and will subsequently trigger a response that may be as severe as localized cell death. The N-terminal coiled-coil domain of RX has been shown to interact with RanGAP2, which is a necessary co-factor in the resistance response.
Pssm-ID: 271353 [Multi-domain] Cd Length: 124 Bit Score: 80.74 E-value: 8.96e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 13 VVSKLISIAAEQISLALGFKKDLKRLGDSLQMIKAFFQDAEERQTKDEAVKVWLQRLKDVAYEADDVLDEFAYEILRRKV 92
Cdd:cd14798 8 LLEKLGELLEQEADLLSGVKEEIESLKDELESMQAFLKDADAKQDEDEELKDWVKQVRDVAYDAEDIIDSFLLKLVPDKR 87
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1743066850 93 EiryqiRRRVRDFCSSSNRFVFRINMANKIKDILKTLDDL 132
Cdd:cd14798 88 R-----GGFLKRLFSLLKELKELHQVAKEIQSIKSRIKDI 122
|
|
| PLN03210 |
PLN03210 |
Resistant to P. syringae 6; Provisional |
948-1254 |
5.10e-14 |
|
Resistant to P. syringae 6; Provisional
Pssm-ID: 215633 [Multi-domain] Cd Length: 1153 Bit Score: 77.22 E-value: 5.10e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 948 KLEVLpiTGGCSSLEKLRISSCEKCNKLEVLPITGGCSSLEKLCISSCEKLSKIRDGLSTSTCLKELDLEDCPNLSSIPN 1027
Cdd:PLN03210 622 KLEKL--WDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 1028 LEGFSSLQYLLVDGCDKLESFPlkaPLSSLKKLMIRDCPHLKPIPS---LDGLSSLIELEFKKvGEEWSR---LLPNMLQ 1101
Cdd:PLN03210 700 GINLKSLYRLNLSGCSRLKSFP---DISTNISWLDLDETAIEEFPSnlrLENLDELILCEMKS-EKLWERvqpLTPLMTM 775
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 1102 SNVSLCSLTILNLPD----PTWIQD----ESLDWLNCVRELAIggfseelqefpwPSSIQYlsASLRDLKLIGWEKLKSL 1173
Cdd:PLN03210 776 LSPSLTRLFLSDIPSlvelPSSIQNlhklEHLEIENCINLETL------------PTGINL--ESLESLDLSGCSRLRTF 841
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 1174 PhqlQFFTALEELTIEGfQGIEAFPEWLGKLSSLKRLTLRGFGKLKSLPHQLqlpTALEVLTMYGFLEIEALPDSFRNLS 1253
Cdd:PLN03210 842 P---DISTNISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNI---SKLKHLETVDFSDCGALTEASWNGS 914
|
.
gi 1743066850 1254 S 1254
Cdd:PLN03210 915 P 915
|
|
| AMN1 |
cd09293 |
Antagonist of mitotic exit network protein 1; Amn1 has been functionally characterized in ... |
891-1048 |
1.81e-05 |
|
Antagonist of mitotic exit network protein 1; Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model.
Pssm-ID: 187754 [Multi-domain] Cd Length: 226 Bit Score: 47.32 E-value: 1.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 891 LEKLRISHCEKLSKIGDGLSTSTCLKELVLEDCPTLS---LIPNLKRFSSLQYLSVESCDKLE---VLPITGGCSSLEKL 964
Cdd:cd09293 30 LEWLELYMCPISDPPLDQLSNCNKLKKLILPGSKLIDdegLIALAQSCPNLQVLDLRACENITdsgIVALATNCPKLQTI 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 965 RISSCEKCN---KLEVLPITGGCSSLEKLCISSCEKLSKIRDGLST--STCLKELDLEDCPNLS--SIP---NLEGFSSL 1034
Cdd:cd09293 110 NLGRHRNGHlitDVSLSALGKNCTFLQTVGFAGCDVTDKGVWELASgcSKSLERLSLNNCRNLTdqSIPailASNYFPNL 189
|
170
....*....|....
gi 1743066850 1035 QYLLVDGCDKLESF 1048
Cdd:cd09293 190 SVLEFRGCPLITDF 203
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
565-663 |
5.50e-04 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 44.15 E-value: 5.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 565 SFTRLRVLKFVGAaNICELPDSLGELKHLRYLDISRTTIVALPKSTTKLYNLQTLRLLGLLRLTFPDGLEKLISLKHLYF 644
Cdd:COG4886 111 NLTNLESLDLSGN-QLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTNLKELDL 189
|
90 100
....*....|....*....|.
gi 1743066850 645 DRKELQ--PVNIGNLTCLQTL 663
Cdd:COG4886 190 SNNQITdlPEPLGNLTNLEEL 210
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| NB-ARC |
pfam00931 |
NB-ARC domain; |
171-416 |
5.02e-32 |
|
NB-ARC domain;
Pssm-ID: 395745 [Multi-domain] Cd Length: 245 Bit Score: 125.57 E-value: 5.02e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 171 RKNDVSKVVDLLVNPKDEQIVSvvpIVGMAGLGKTALAKLVYND-SNVATHFDVKFWVCVSEHFDVKRILKEMLE--HFT 247
Cdd:pfam00931 1 REDMVEKVIGKLSEKDEPGIVG---IHGMGGVGKTTLAAQIFNDfDEVEGHFDSVAWVVVSKTFTISTLQQTILQnlGLS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 248 DDQISIPQNMNamvkkLKEKIEGAKREKdqiKYLLVLDDVWSFEKWDALKDHLmeisKNGGNG--VIVTTRIQDVASKVQ 325
Cdd:pfam00931 78 EDDWDNKEEGE-----LARKIRRALLTK---RFLLVLDDVWDEEDWDKIGIPL----PDRENGcrVLLTTRSEEVAGRVG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 326 AlPNQRHQPGRLGDEECWSLIKQQALRASPVSHE-LELIGNEIAKQCQGVALVAKLMGGIMRK---IERSPRAWSKIQR- 400
Cdd:pfam00931 146 G-PSDPHEVELLEPDEAWELFENKVFPKTLGECElLEDVAKEIVEKCRGLPLALKVLGGLLSCkktVEEWKHVYDVLQSe 224
|
250 260
....*....|....*....|
gi 1743066850 401 ----SDAWGSMERVLKLSFD 416
Cdd:pfam00931 225 lksnSYSLNSVRSILQLSYE 244
|
|
| Rx_N |
pfam18052 |
Rx N-terminal domain; This entry represents the N-terminal domain found in many plant ... |
9-101 |
2.27e-29 |
|
Rx N-terminal domain; This entry represents the N-terminal domain found in many plant resistance proteins. This domain has been predicted to be a coiled-coil, however the structure shows that it adopts a four helical bundle fold.
Pssm-ID: 436239 Cd Length: 93 Bit Score: 112.75 E-value: 2.27e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 9 VLEEVVSKLISIAAEQISLALGFKKDLKRLGDSLQMIKAFFQDAEERQTKDEAVKVWLQRLKDVAYEADDVLDEFAYEIL 88
Cdd:pfam18052 1 AVSSLLEKLGSLLAEEAKLLKGVKDDLEKLKDELESIQAFLEDAERKQITDEQVKLWLKQLRDVAYDAEDVLDEFLYEAL 80
|
90
....*....|...
gi 1743066850 89 RRKVEIRYQIRRR 101
Cdd:pfam18052 81 RRKSSPKKLKFRH 93
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
868-1129 |
7.39e-18 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 87.68 E-value: 7.39e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 868 LKRLKIWVCPLLKSVPLTGQCYSLEKLRISHCeKLSKIGDGLSTSTCLKELVLEDCPTLSLIPNLKRFSSLQYLSVESCd 947
Cdd:COG4886 92 LGDLTNLTELDLSGNEELSNLTNLESLDLSGN-QLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNN- 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 948 KLEVLPIT-GGCSSLEKLRISScekcNKLEVLPIT-GGCSSLEKLCISSCeKLSKIRDGLSTSTCLKELDLEDCpNLSSI 1025
Cdd:COG4886 170 QLTDLPEElGNLTNLKELDLSN----NQITDLPEPlGNLTNLEELDLSGN-QLTDLPEPLANLTNLETLDLSNN-QLTDL 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 1026 PNLEGFSSLQYLLVDGCdKLESFPLKAPLSSLKKLMIRDCP----HLKPIPSLDGLSSLIELEFKKVGEEWSRLLPNMLQ 1101
Cdd:COG4886 244 PELGNLTNLEELDLSNN-QLTDLPPLANLTNLKTLDLSNNQltdlKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTT 322
|
250 260
....*....|....*....|....*...
gi 1743066850 1102 SNVSLCSLTILNLPDPTWIQDESLDWLN 1129
Cdd:COG4886 323 LLLLLLLLKGLLVTLTTLALSLSLLALL 350
|
|
| RX-CC_like |
cd14798 |
Coiled-coil domain of the potato virux X resistance protein and similar proteins; The potato ... |
13-132 |
8.96e-18 |
|
Coiled-coil domain of the potato virux X resistance protein and similar proteins; The potato virus X resistance protein (RX) confers resistance against potato virus X. It is a member of a family of resistance proteins with a domain architecture that includes an N-terminal coiled-coil domain (modeled here), a nucleotide-binding domain, and leucine-rich repeats (CC-NB-LRR). These intracellular resistance proteins recognize pathogen effector proteins and will subsequently trigger a response that may be as severe as localized cell death. The N-terminal coiled-coil domain of RX has been shown to interact with RanGAP2, which is a necessary co-factor in the resistance response.
Pssm-ID: 271353 [Multi-domain] Cd Length: 124 Bit Score: 80.74 E-value: 8.96e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 13 VVSKLISIAAEQISLALGFKKDLKRLGDSLQMIKAFFQDAEERQTKDEAVKVWLQRLKDVAYEADDVLDEFAYEILRRKV 92
Cdd:cd14798 8 LLEKLGELLEQEADLLSGVKEEIESLKDELESMQAFLKDADAKQDEDEELKDWVKQVRDVAYDAEDIIDSFLLKLVPDKR 87
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1743066850 93 EiryqiRRRVRDFCSSSNRFVFRINMANKIKDILKTLDDL 132
Cdd:cd14798 88 R-----GGFLKRLFSLLKELKELHQVAKEIQSIKSRIKDI 122
|
|
| PLN03210 |
PLN03210 |
Resistant to P. syringae 6; Provisional |
948-1254 |
5.10e-14 |
|
Resistant to P. syringae 6; Provisional
Pssm-ID: 215633 [Multi-domain] Cd Length: 1153 Bit Score: 77.22 E-value: 5.10e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 948 KLEVLpiTGGCSSLEKLRISSCEKCNKLEVLPITGGCSSLEKLCISSCEKLSKIRDGLSTSTCLKELDLEDCPNLSSIPN 1027
Cdd:PLN03210 622 KLEKL--WDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 1028 LEGFSSLQYLLVDGCDKLESFPlkaPLSSLKKLMIRDCPHLKPIPS---LDGLSSLIELEFKKvGEEWSR---LLPNMLQ 1101
Cdd:PLN03210 700 GINLKSLYRLNLSGCSRLKSFP---DISTNISWLDLDETAIEEFPSnlrLENLDELILCEMKS-EKLWERvqpLTPLMTM 775
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 1102 SNVSLCSLTILNLPD----PTWIQD----ESLDWLNCVRELAIggfseelqefpwPSSIQYlsASLRDLKLIGWEKLKSL 1173
Cdd:PLN03210 776 LSPSLTRLFLSDIPSlvelPSSIQNlhklEHLEIENCINLETL------------PTGINL--ESLESLDLSGCSRLRTF 841
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 1174 PhqlQFFTALEELTIEGfQGIEAFPEWLGKLSSLKRLTLRGFGKLKSLPHQLqlpTALEVLTMYGFLEIEALPDSFRNLS 1253
Cdd:PLN03210 842 P---DISTNISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNI---SKLKHLETVDFSDCGALTEASWNGS 914
|
.
gi 1743066850 1254 S 1254
Cdd:PLN03210 915 P 915
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
764-1162 |
8.84e-11 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 65.73 E-value: 8.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 764 LRPVGDSNTGSFLLNNLMELNFYDCINCESLPPLGQLHNLQYLNLRDltkmkrmgnefycnegvdgmNKVIKVFPALKKF 843
Cdd:COG4886 76 LLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEELSNLTNLESLDLSG--------------------NQLTDLPEELANL 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 844 TlsgmesleewtamaetktimfpclkrlkiwvcpllksvpltgqcySLEKLRISHCeKLSKIGDGLSTSTCLKELVLEDC 923
Cdd:COG4886 136 T---------------------------------------------NLKELDLSNN-QLTDLPEPLGNLTNLKSLDLSNN 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 924 PtLSLIPN-LKRFSSLQYLSVESCdKLEVLPIT-GGCSSLEKLRISScekcNKLEVLPIT-GGCSSLEKLCISSCeKLSK 1000
Cdd:COG4886 170 Q-LTDLPEeLGNLTNLKELDLSNN-QITDLPEPlGNLTNLEELDLSG----NQLTDLPEPlANLTNLETLDLSNN-QLTD 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 1001 IrDGLSTSTCLKELDLEDCpNLSSIPNLEGFSSLQYLLVDGC-------DKLESFPLKAPLSSLKKLMIRDCPHLKPIPS 1073
Cdd:COG4886 243 L-PELGNLTNLEELDLSNN-QLTDLPPLANLTNLKTLDLSNNqltdlklKELELLLGLNSLLLLLLLLNLLELLILLLLL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 1074 LDGLSSLIELEFKKVGEEWSRLLPNMLQSNVSLCSLTILNLPDPTWIQDESLDWLNCVRELAIGGFSEELQEFPWPSSIQ 1153
Cdd:COG4886 321 TTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAGV 400
|
....*....
gi 1743066850 1154 YLSASLRDL 1162
Cdd:COG4886 401 LLLTLALLD 409
|
|
| PLN03210 |
PLN03210 |
Resistant to P. syringae 6; Provisional |
868-1049 |
4.82e-09 |
|
Resistant to P. syringae 6; Provisional
Pssm-ID: 215633 [Multi-domain] Cd Length: 1153 Bit Score: 61.04 E-value: 4.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 868 LKRLKIWVCPLLKSVPLTGQCYSLEKLRISHCEKLSKIGDGLSTSTCLKELVLEDCPTLSLIPNLKRFSSLQYLSVESCD 947
Cdd:PLN03210 636 LRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCS 715
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 948 KLEVLP-ITGGCSSLE-----------KLRISS------CE-KCNKL--EVLPITGGCS----SLEKLCISSCEKLSKIR 1002
Cdd:PLN03210 716 RLKSFPdISTNISWLDldetaieefpsNLRLENldelilCEmKSEKLweRVQPLTPLMTmlspSLTRLFLSDIPSLVELP 795
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1743066850 1003 DGLSTSTCLKELDLEDCPNLSSIPNLEGFSSLQYLLVDGCDKLESFP 1049
Cdd:PLN03210 796 SSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFP 842
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
985-1290 |
3.47e-08 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 57.64 E-value: 3.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 985 SSLEKLCISSCEKLSKIRDGLSTSTCLKELDLEDCPNLSSIPNLEGFSSLQYLLVDGCDKLESFPLKAPLSSLKKLMIRD 1064
Cdd:COG4886 23 TLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELD 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 1065 CPHLKPIPSLDGLSSLiELEFKKVGEewsrlLPNMLQSnvsLCSLTILNLPDptwiqdesldwlNCVRELaiggfseelq 1144
Cdd:COG4886 103 LSGNEELSNLTNLESL-DLSGNQLTD-----LPEELAN---LTNLKELDLSN------------NQLTDL---------- 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 1145 efpwPSSIQYLSaSLRDLKLiGWEKLKSLPHQLQFFTALEELTIEGFQgIEAFPEWLGKLSSLKRLTLRGfGKLKSLPHQ 1224
Cdd:COG4886 152 ----PEPLGNLT-NLKSLDL-SNNQLTDLPEELGNLTNLKELDLSNNQ-ITDLPEPLGNLTNLEELDLSG-NQLTDLPEP 223
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1743066850 1225 LQLPTALEVLTMYGfLEIEALPdSFRNLSSLRCLRLYLCdKLMYLPPVDvmrSLSNLKTMYIVHCP 1290
Cdd:COG4886 224 LANLTNLETLDLSN-NQLTDLP-ELGNLTNLEELDLSNN-QLTDLPPLA---NLTNLKTLDLSNNQ 283
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
738-1068 |
5.32e-07 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 53.78 E-value: 5.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 738 EGLQPHSNLQSLTVWNYGGESFPSWMLRpvgdsntgsflLNNLMELNFYDCiNCESLP-PLGQLHNLQYLNLRDlTKMKR 816
Cdd:COG4886 107 EELSNLTNLESLDLSGNQLTDLPEELAN-----------LTNLKELDLSNN-QLTDLPePLGNLTNLKSLDLSN-NQLTD 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 817 MGNEfycnegvdgmnkvIKVFPALKKFTLSGmesleewtamaeTKtimfpclkrlkiwvcplLKSVPLT-GQCYSLEKLR 895
Cdd:COG4886 174 LPEE-------------LGNLTNLKELDLSN------------NQ-----------------ITDLPEPlGNLTNLEELD 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 896 ISHCeKLSKIGDGLSTSTCLKELVLEDCPtLSLIPNLKRFSSLQYLSVESCdKLEVLPITGGCSSLEKLRISScekcNKL 975
Cdd:COG4886 212 LSGN-QLTDLPEPLANLTNLETLDLSNNQ-LTDLPELGNLTNLEELDLSNN-QLTDLPPLANLTNLKTLDLSN----NQL 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 976 EVLpitggcsSLEKLCISSCEKLSKIRDGLSTSTCLKELDLEDCPNLSSIPNLEGFSSLQYLLVDGCDKLESFPLKAPLS 1055
Cdd:COG4886 285 TDL-------KLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLN 357
|
330
....*....|...
gi 1743066850 1056 SLKKLMIRDCPHL 1068
Cdd:COG4886 358 LLSLLLTLLLTLG 370
|
|
| PLN03210 |
PLN03210 |
Resistant to P. syringae 6; Provisional |
777-1121 |
2.66e-06 |
|
Resistant to P. syringae 6; Provisional
Pssm-ID: 215633 [Multi-domain] Cd Length: 1153 Bit Score: 52.18 E-value: 2.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 777 LNNLMELNFYDCINCESLPPLGQLHNLQYLNLRDLTKMKRMGNEFYCNEGVDGMNKVIKVFPA------LKKFTLSGMES 850
Cdd:PLN03210 680 LNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSnlrlenLDELILCEMKS 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 851 LEEWtamaetktimfpclKRLKIwVCPLLKSVPltgqcYSLEKLRISHCEKLSKIGDGLSTSTCLKELVLEDCPTLSLIP 930
Cdd:PLN03210 760 EKLW--------------ERVQP-LTPLMTMLS-----PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 931 NLKRFSSLQYLSVESCDKLEVLP-ITGGCSSLeKLRISSCEkcnklEVLPITGGCSSLEKLCISSCEKLSKIRDGLSTST 1009
Cdd:PLN03210 820 TGINLESLESLDLSGCSRLRTFPdISTNISDL-NLSRTGIE-----EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLK 893
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 1010 CLKELDLEDCPNLSSIpNLEGFSSlqyLLVDGCDKLESFplkapLSSLKKLMIRDCPHLKPIPSLDGLSSLIELEFKkvG 1089
Cdd:PLN03210 894 HLETVDFSDCGALTEA-SWNGSPS---EVAMATDNIHSK-----LPSTVCINFINCFNLDQEALLQQQSIFKQLILS--G 962
|
330 340 350
....*....|....*....|....*....|..
gi 1743066850 1090 EEwsrlLPNMLQSNVSLCSLTILNLPDPTWIQ 1121
Cdd:PLN03210 963 EE----VPSYFTHRTTGASLTNIPLLHISPCQ 990
|
|
| PLN03210 |
PLN03210 |
Resistant to P. syringae 6; Provisional |
963-1294 |
6.57e-06 |
|
Resistant to P. syringae 6; Provisional
Pssm-ID: 215633 [Multi-domain] Cd Length: 1153 Bit Score: 50.64 E-value: 6.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 963 KLRISSCEKcNKLEVLPITGGCSSLEKLCISScEKLSKIRDGLSTSTCLKELDLEDCPNLSSIPNLegfsslqyllvdgc 1042
Cdd:PLN03210 590 KLRLLRWDK-YPLRCMPSNFRPENLVKLQMQG-SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDL-------------- 653
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 1043 dklesfplkAPLSSLKKLMIRDCphlkpipsldglSSLIELefkkvgeewsrllpnmlqsnvslcsltilnlpdPTWIQd 1122
Cdd:PLN03210 654 ---------SMATNLETLKLSDC------------SSLVEL---------------------------------PSSIQ- 678
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 1123 esldWLNCVRELAIGGfSEELQEFPWPSSIQylsaSLRDLKLIGWEKLKSLPhqlQFFTALEELTIEGfQGIEAFPEWLg 1202
Cdd:PLN03210 679 ----YLNKLEDLDMSR-CENLEILPTGINLK----SLYRLNLSGCSRLKSFP---DISTNISWLDLDE-TAIEEFPSNL- 744
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 1203 KLSSLKRLTL------RGFGKLKSL-PHQLQLPTALEVLTMYGFLEIEALPDSFRNLSSLRCLRLYLCDKLMYLPPVDVM 1275
Cdd:PLN03210 745 RLENLDELILcemkseKLWERVQPLtPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINL 824
|
330
....*....|....*....
gi 1743066850 1276 RSLSNLKtmyIVHCPQLET 1294
Cdd:PLN03210 825 ESLESLD---LSGCSRLRT 840
|
|
| AMN1 |
cd09293 |
Antagonist of mitotic exit network protein 1; Amn1 has been functionally characterized in ... |
891-1048 |
1.81e-05 |
|
Antagonist of mitotic exit network protein 1; Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model.
Pssm-ID: 187754 [Multi-domain] Cd Length: 226 Bit Score: 47.32 E-value: 1.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 891 LEKLRISHCEKLSKIGDGLSTSTCLKELVLEDCPTLS---LIPNLKRFSSLQYLSVESCDKLE---VLPITGGCSSLEKL 964
Cdd:cd09293 30 LEWLELYMCPISDPPLDQLSNCNKLKKLILPGSKLIDdegLIALAQSCPNLQVLDLRACENITdsgIVALATNCPKLQTI 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 965 RISSCEKCN---KLEVLPITGGCSSLEKLCISSCEKLSKIRDGLST--STCLKELDLEDCPNLS--SIP---NLEGFSSL 1034
Cdd:cd09293 110 NLGRHRNGHlitDVSLSALGKNCTFLQTVGFAGCDVTDKGVWELASgcSKSLERLSLNNCRNLTdqSIPailASNYFPNL 189
|
170
....*....|....
gi 1743066850 1035 QYLLVDGCDKLESF 1048
Cdd:cd09293 190 SVLEFRGCPLITDF 203
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
565-663 |
5.50e-04 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 44.15 E-value: 5.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 565 SFTRLRVLKFVGAaNICELPDSLGELKHLRYLDISRTTIVALPKSTTKLYNLQTLRLLGLLRLTFPDGLEKLISLKHLYF 644
Cdd:COG4886 111 NLTNLESLDLSGN-QLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTNLKELDL 189
|
90 100
....*....|....*....|.
gi 1743066850 645 DRKELQ--PVNIGNLTCLQTL 663
Cdd:COG4886 190 SNNQITdlPEPLGNLTNLEEL 210
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
560-663 |
4.79e-03 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 41.07 E-value: 4.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1743066850 560 KKLSKSFTRLRVLKFVGAAN--ICELPDSLGELKHLRYLDISRTTIVALPKSttklynlqtlrllgllrltfpdgLEKLI 637
Cdd:COG4886 172 TDLPEELGNLTNLKELDLSNnqITDLPEPLGNLTNLEELDLSGNQLTDLPEP-----------------------LANLT 228
|
90 100
....*....|....*....|....*..
gi 1743066850 638 SLKHLYFDRKELQPV-NIGNLTCLQTL 663
Cdd:COG4886 229 NLETLDLSNNQLTDLpELGNLTNLEEL 255
|
|
| |
