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Conserved domains on  [gi|1058053549|gb|JAS30436|]
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hypothetical protein g.7629 [Clastoptera arizonana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OTU_OTUD7 cd22768
OTU (ovarian tumor) domain of OTU domain-containing proteins 7A, 7B, and similar proteins; ...
 119-319 7.44e-129

OTU (ovarian tumor) domain of OTU domain-containing proteins 7A, 7B, and similar proteins; This subfamily consists of OTU domain-containing protein 7A (OTUD7A), OTUD7B, and similar proteins. OTUD7A and OTUD7B are deubiquitinases (DUBs)/ubiquitin thioesterases (EC 3.4.19.12) that specifically target Lys11-linked polyubiquitin. OTUD7A, also called zinc finger protein Cezanne 2, has been identified as a critical gene for brain function. It localizes to dendritic and spine compartments in cortical neurons, and its reduced levels contributed to dendritic spine and dendrite outgrowth deficits. OTUD7B, also called zinc finger protein Cezanne, functions as a negative regulator of the non-canonical NF-kappaB pathway by mediating the deubiquitination of TRAF3, an inhibitor of the NF-kappaB pathway, resulting in preventing TRAF3 proteolysis and over-activation of non-canonical NF-kappaB. OTUD7 proteins belongs to the OTU family of cysteine proteases that use a conserved cysteine, histidine, and an aspartate, as the catalytic triad. They are classified as family C64 cysteine proteases by MEROPS.


:

Pssm-ID: 438605  Cd Length: 208  Bit Score: 374.72  E-value: 7.44e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1058053549 119 STQLSLEQAGHLNWW--TTLCHKLWPLSTSGDGNCLLHAASLGMWGFHDRLLTLRKSLHAFLSQSPRREALWRRWRRQQS 196
Cdd:cd22768     2 STLVSLEQAGRLNWWakDGGCQRLLPLATTGDGNCLLHAASLGMWGFHDRLLTLRKALYETLTSSAAKEALKRRWRWQQT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1058053549 197 ILNAQAGLVYSEIEWRREWNAIVNMASTEPRLRRLSIASDQSGELSG----AIYESLEEIHVLALAHVLRRPIIVVADTM 272
Cdd:cd22768    82 QVNKEAGLVYSEEEWEREWKSLLKLASTEPRSQPSPSSGSELEEVIEnssdPTYESLEEIHVFVLAHVLRRPIIVVADTM 161

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1058053549 273 LRDMNGEPLAPIPFGGIYLPLECSSSECHRSPLLLAYDGGHFSALVA 319
Cdd:cd22768   162 LRDSNGEPLAPIPFGGIYLPLECPPSECHRSPLVLAYDAAHFSALVP 208
ZnF_A20 smart00259
A20-like zinc fingers; A20- (an inhibitor of cell death)-like zinc fingers. The zinc finger ...
 514-537 6.25e-09

A20-like zinc fingers; A20- (an inhibitor of cell death)-like zinc fingers. The zinc finger mediates self-association in A20. These fingers also mediate IL-1-induced NF-kappaB activation.


:

Pssm-ID: 128555  Cd Length: 26  Bit Score: 51.43  E-value: 6.25e-09
                           10        20
                   ....*....|....*....|....
gi 1058053549  514 LCQTPGCVFFGNPQTKNFCSKCFR 537
Cdd:smart00259   3 KCRRPGCGFFGNPATEGLCSKCFK 26
 
Name Accession Description Interval E-value
OTU_OTUD7 cd22768
OTU (ovarian tumor) domain of OTU domain-containing proteins 7A, 7B, and similar proteins; ...
 119-319 7.44e-129

OTU (ovarian tumor) domain of OTU domain-containing proteins 7A, 7B, and similar proteins; This subfamily consists of OTU domain-containing protein 7A (OTUD7A), OTUD7B, and similar proteins. OTUD7A and OTUD7B are deubiquitinases (DUBs)/ubiquitin thioesterases (EC 3.4.19.12) that specifically target Lys11-linked polyubiquitin. OTUD7A, also called zinc finger protein Cezanne 2, has been identified as a critical gene for brain function. It localizes to dendritic and spine compartments in cortical neurons, and its reduced levels contributed to dendritic spine and dendrite outgrowth deficits. OTUD7B, also called zinc finger protein Cezanne, functions as a negative regulator of the non-canonical NF-kappaB pathway by mediating the deubiquitination of TRAF3, an inhibitor of the NF-kappaB pathway, resulting in preventing TRAF3 proteolysis and over-activation of non-canonical NF-kappaB. OTUD7 proteins belongs to the OTU family of cysteine proteases that use a conserved cysteine, histidine, and an aspartate, as the catalytic triad. They are classified as family C64 cysteine proteases by MEROPS.


Pssm-ID: 438605  Cd Length: 208  Bit Score: 374.72  E-value: 7.44e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1058053549 119 STQLSLEQAGHLNWW--TTLCHKLWPLSTSGDGNCLLHAASLGMWGFHDRLLTLRKSLHAFLSQSPRREALWRRWRRQQS 196
Cdd:cd22768     2 STLVSLEQAGRLNWWakDGGCQRLLPLATTGDGNCLLHAASLGMWGFHDRLLTLRKALYETLTSSAAKEALKRRWRWQQT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1058053549 197 ILNAQAGLVYSEIEWRREWNAIVNMASTEPRLRRLSIASDQSGELSG----AIYESLEEIHVLALAHVLRRPIIVVADTM 272
Cdd:cd22768    82 QVNKEAGLVYSEEEWEREWKSLLKLASTEPRSQPSPSSGSELEEVIEnssdPTYESLEEIHVFVLAHVLRRPIIVVADTM 161

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1058053549 273 LRDMNGEPLAPIPFGGIYLPLECSSSECHRSPLLLAYDGGHFSALVA 319
Cdd:cd22768   162 LRDSNGEPLAPIPFGGIYLPLECPPSECHRSPLVLAYDAAHFSALVP 208
OTU pfam02338
OTU-like cysteine protease; This family is comprised of a group of predicted cysteine ...
 147-314 7.44e-20

OTU-like cysteine protease; This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases.


Pssm-ID: 426728 [Multi-domain]  Cd Length: 127  Bit Score: 85.58  E-value: 7.44e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1058053549 147 GDGNCLLHAASLGMWGFHDrllTLRKSLHAFLsqsprREALWRRWRRQQSILnaqaglvysEIEWRREWNAIVNMAStep 226
Cdd:pfam02338   2 GDGNCLYRSISHQLWGVHD---VLRKMLVQEL-----RETLAEYMREHKEEF---------EPFLEDDETGDIIEIE--- 61

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1058053549 227 rlrrlsiasdQSGElsgaiyeSLEEIHVLALAHVLRRPIIVvadtmLRDMNGEPLAPIPFGGIYLPLECSSSECHRSPLL 306
Cdd:pfam02338  62 ----------QTGA-------WGGEIEIFALAHILRRPIIV-----YKSEGGEELGGLKEYGIYLPLGWDPSLCLVYPRH 119


                  ....*...
gi 1058053549 307 LAYDGGHF 314
Cdd:pfam02338 120 LYYLGGHY 127
ZnF_A20 smart00259
A20-like zinc fingers; A20- (an inhibitor of cell death)-like zinc fingers. The zinc finger ...
 514-537 6.25e-09

A20-like zinc fingers; A20- (an inhibitor of cell death)-like zinc fingers. The zinc finger mediates self-association in A20. These fingers also mediate IL-1-induced NF-kappaB activation.


Pssm-ID: 128555  Cd Length: 26  Bit Score: 51.43  E-value: 6.25e-09
                           10        20
                   ....*....|....*....|....
gi 1058053549  514 LCQTPGCVFFGNPQTKNFCSKCFR 537
Cdd:smart00259   3 KCRRPGCGFFGNPATEGLCSKCFK 26
zf-A20 pfam01754
A20-like zinc finger; The A20 Zn-finger of bovine/human Rabex5/rabGEF1 is a Ubiquitin Binding ...
 514-537 3.21e-07

A20-like zinc finger; The A20 Zn-finger of bovine/human Rabex5/rabGEF1 is a Ubiquitin Binding Domain. The zinc finger mediates self-association in A20. These fingers also mediate IL-1-induced NF-kappa B activation.


Pssm-ID: 460313  Cd Length: 24  Bit Score: 46.34  E-value: 3.21e-07
                          10        20
                  ....*....|....*....|....
gi 1058053549 514 LCQTpGCVFFGNPQTKNFCSKCFR 537
Cdd:pfam01754   2 LCRN-GCGFYGSPATNGLCSKCYK 24
 
Name Accession Description Interval E-value
OTU_OTUD7 cd22768
OTU (ovarian tumor) domain of OTU domain-containing proteins 7A, 7B, and similar proteins; ...
 119-319 7.44e-129

OTU (ovarian tumor) domain of OTU domain-containing proteins 7A, 7B, and similar proteins; This subfamily consists of OTU domain-containing protein 7A (OTUD7A), OTUD7B, and similar proteins. OTUD7A and OTUD7B are deubiquitinases (DUBs)/ubiquitin thioesterases (EC 3.4.19.12) that specifically target Lys11-linked polyubiquitin. OTUD7A, also called zinc finger protein Cezanne 2, has been identified as a critical gene for brain function. It localizes to dendritic and spine compartments in cortical neurons, and its reduced levels contributed to dendritic spine and dendrite outgrowth deficits. OTUD7B, also called zinc finger protein Cezanne, functions as a negative regulator of the non-canonical NF-kappaB pathway by mediating the deubiquitination of TRAF3, an inhibitor of the NF-kappaB pathway, resulting in preventing TRAF3 proteolysis and over-activation of non-canonical NF-kappaB. OTUD7 proteins belongs to the OTU family of cysteine proteases that use a conserved cysteine, histidine, and an aspartate, as the catalytic triad. They are classified as family C64 cysteine proteases by MEROPS.


Pssm-ID: 438605  Cd Length: 208  Bit Score: 374.72  E-value: 7.44e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1058053549 119 STQLSLEQAGHLNWW--TTLCHKLWPLSTSGDGNCLLHAASLGMWGFHDRLLTLRKSLHAFLSQSPRREALWRRWRRQQS 196
Cdd:cd22768     2 STLVSLEQAGRLNWWakDGGCQRLLPLATTGDGNCLLHAASLGMWGFHDRLLTLRKALYETLTSSAAKEALKRRWRWQQT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1058053549 197 ILNAQAGLVYSEIEWRREWNAIVNMASTEPRLRRLSIASDQSGELSG----AIYESLEEIHVLALAHVLRRPIIVVADTM 272
Cdd:cd22768    82 QVNKEAGLVYSEEEWEREWKSLLKLASTEPRSQPSPSSGSELEEVIEnssdPTYESLEEIHVFVLAHVLRRPIIVVADTM 161

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1058053549 273 LRDMNGEPLAPIPFGGIYLPLECSSSECHRSPLLLAYDGGHFSALVA 319
Cdd:cd22768   162 LRDSNGEPLAPIPFGGIYLPLECPPSECHRSPLVLAYDAAHFSALVP 208
OTU_OTUD7B cd22772
OTU (ovarian tumor) domain of OTU domain-containing protein 7B; OTU domain-containing protein ...
 119-319 2.02e-102

OTU (ovarian tumor) domain of OTU domain-containing protein 7B; OTU domain-containing protein 7B (OTUD7B) is also called cellular zinc finger anti-NF-kappa-B protein, zinc finger A20 domain-containing protein 1, or zinc finger protein Cezanne. It is a deubiquitinase (DUB)/ubiquitin thioesterase (EC 3.4.19.12) that specifically targets Lys11-linked polyubiquitin. It functions as a negative regulator of the non-canonical NF-kappaB pathway by mediating the deubiquitination of TRAF3, an inhibitor of the NF-kappaB pathway, resulting in preventing TRAF3 proteolysis and over-activation of non-canonical NF-kappaB. OTUD7B also deubiquitinates ZAP70, and thus, regulates T cell receptor (TCR) signaling. It belongs to the OTU family of cysteine proteases that use a conserved cysteine, histidine, and an aspartate, as the catalytic triad. It is classified as a family C64 cysteine protease by MEROPS.


Pssm-ID: 438609  Cd Length: 207  Bit Score: 306.96  E-value: 2.02e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1058053549 119 STQLSLEQAGHLNWWTTL---CHKLWPLSTSGDGNCLLHAASLGMWGFHDRLLTLRKSLHAFLSQSPRREALWRRWRRQQ 195
Cdd:cd22772     2 SMLVALEQAGRLNWWVSVdptCQRLLPLATTGDGNCLLHAASLGMWGFHDRDLMLRKALYALMEKGVEKEALKRRWRWQQ 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1058053549 196 SILNAQAGLVYSEIEWRREWNAIVNMASTEPRLRRLSIASDQSGELSG--AIYESLEEIHVLALAHVLRRPIIVVADTML 273
Cdd:cd22772    82 TQQNKESGLVYTEDEWQKEWNELIKLASSEPRMHYGTNGANCGGVESSeePVYESLEEFHVFVLAHVLRRPIVVVADTML 161

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1058053549 274 RDMNGEPLAPIPFGGIYLPLECSSSECHRSPLLLAYDGGHFSALVA 319
Cdd:cd22772   162 RDSGGEAFAPIPFGGIYLPLEVPASKCHRSPLVLAYDQAHFSALVS 207
OTU_OTUD7A cd22773
OTU (ovarian tumor) domain of OTU domain-containing protein 7A; OTU domain-containing protein ...
 119-319 7.04e-89

OTU (ovarian tumor) domain of OTU domain-containing protein 7A; OTU domain-containing protein 7A (OTUD7A), also called zinc finger protein Cezanne 2, is a deubiquitinase (DUB)/ubiquitin thioesterase (EC 3.4.19.12) that specifically targets Lys11-linked polyubiquitin. OTUD7A has been identified as a critical gene for brain function. It localizes to dendritic and spine compartments in cortical neurons, and its reduced levels contributed to dendritic spine and dendrite outgrowth deficits. A homozygous OTUD7A missense variant located within the OTU catalytic domain is linked to early-onset epileptic encephalopathy and proteasome dysfunction. OTUD7A belongs to the OTU family of cysteine proteases that use a conserved cysteine, histidine, and an aspartate, as the catalytic triad. It is classified as a family C64 cysteine protease by MEROPS.


Pssm-ID: 438610  Cd Length: 207  Bit Score: 272.33  E-value: 7.04e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1058053549 119 STQLSLEQAGHLNWWTTLC---HKLWPLSTSGDGNCLLHAASLGMWGFHDRLLTLRKSLHAFLSQSPRREALWRRWRRQQ 195
Cdd:cd22773     2 STMVALEQAGRLNWWSTVCtscKRLLPLATTGDGNCLLHAASLGMWGFHDRDLVLRKALYTMMKSGAEREALKRRWRWQQ 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1058053549 196 SILNAQAGLVYSEIEWRREWNAIVNMASTEPRlRRLSIASDQSGELSGA---IYESLEEIHVLALAHVLRRPIIVVADTM 272
Cdd:cd22773    82 TQQNKESGLVYTEEEWEREWNELLKLASSEPR-THFSKNGGTGGGVDNSedpVYESLEEFHVFVLAHILRRPIVVVADTM 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1058053549 273 LRDMNGEPLAPIPFGGIYLPLECSSSECHRSPLLLAYDGGHFSALVA 319
Cdd:cd22773   161 LRDSGGEAFAPIPFGGIYLPLEVPPNRCHCSPLVLAYDQAHFSALVS 207
OTU_TNFAIP3 cd22766
OTU (ovarian tumor) domain of tumor necrosis factor alpha induced protein 3; Tumor necrosis ...
 93-318 3.21e-84

OTU (ovarian tumor) domain of tumor necrosis factor alpha induced protein 3; Tumor necrosis factor (TNF) alpha-induced protein 3 (TNFAIP3) is also called OTU domain-containing protein 7C (OTUD7C), DNA-binding protein A20, or zinc finger protein A20. It is a ubiquitin-editing enzyme that contains both ubiquitin ligase and deubiquitinase (DUB)/ubiquitin thioesterase (EC 3.4.19.12) activities. It antagonizes IKK [IkappaB (inhibitor of kappaB) kinase] activation by modulating Lys63-linked polyubiquitination of cytokine-receptor-associated factors including TRAF2/6 (tumour-necrosis-factor-receptor-associated factor 2/6) and RIP1 (receptor-interacting protein 1). It can also inhibit IKK through a non-catalytic mechanism which involves polyubiquitin. In vitro, TNFAIP3 is able to deubiquitinate 'Lys-11'-, 'Lys-48'- and 'Lys-63' polyubiquitin chains. TNFAIP3 contains several A20-type zinc fingers that mediate the ubiquitin ligase activity and an OTU (ovarian tumor) domain that contains the DUB activity. It belongs to the OTU family of cysteine proteases that use a conserved cysteine, histidine, and an aspartate, as the catalytic triad. It is classified as a family C64 cysteine protease by MEROPS.


Pssm-ID: 438603  Cd Length: 220  Bit Score: 260.65  E-value: 3.21e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1058053549  93 HTFILPDLTAYPDDFRKFLEKDLIAVSTQLSLEQAGHLNWWTTLChKLWPLSTSGDGNCLLHAASLGMWGFHDRLLTLRK 172
Cdd:cd22766     6 YTLQLPRLCQFPPDFREFLQKALIDRNIQRTLEEAKKLNWCREVR-KLVPLKTTGDGNCLLHAVSLYMWGVQDTDLVLRK 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1058053549 173 SLHAFLSQSPRREaLWRRWRRQ--QSILNAQAGLVYSEIEWRREWNAIVNMASTEPRLRRlsiasdqsgelSGAIYESLE 250
Cdd:cd22766    85 ALYEALVETDTRN-FKLRWQRErlKSQEFVGTGLRYDTREWEEEWDNVVKMASPESKPAA-----------GGLPYNSLE 152

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1058053549 251 EIHVLALAHVLRRPIIVVADTMLRDMNGEPLAPIPFGGIYLPLECSSSECHRSPLLLAYDGGHFSALV 318
Cdd:cd22766   153 EIHIFVLANILRRPIIVIADDMLRSLEGSSLAPLNFGGIYLPLHWPPQECYKYPIVLGYDSQHFTPLV 220
OTU_C64 cd22750
OTU (ovarian tumor) domain of family C64 cysteine proteases; This group includes proteins ...
 124-318 5.73e-68

OTU (ovarian tumor) domain of family C64 cysteine proteases; This group includes proteins classified as family C64 cysteine protease by MEROPS, such as tumor necrosis factor (TNF) alpha-induced protein 3 (TNFAIP3), ZRANB1, OTU domain-containing protein 7A (OTUD7A), and OTUD7B. It also includes VCIP135. These proteins are deubiquitinases (DUBs)/ubiquitin thioesterases (EC 3.4.19.12) that mediates the deubiquitination of protein substrates. TNFAIP3 also contains ubiquitin ligase activity. It antagonizes IKK [IkappaB (inhibitor of kappaB) kinase] activation by modulating Lys63-linked polyubiquitination of cytokine-receptor-associated factors including TRAF2/6 (tumour-necrosis-factor-receptor-associated factor 2/6) and RIP1 (receptor-interacting protein 1). ZRANB1 binds, deubiquitinates, and stabilizes EZH2, which is the catalytic component of the Polycomb repressive complex 2 (PRC2) that silences gene transcription by methylating histone H3 at lysine 27 and is mutated or highly expressed in many types of cancer, including lymphoma, melanoma, prostate cancer, ovarian cancer, and breast cancer. OTUD7A has been identified as a critical gene for brain function, while OTUD7B functions as a negative regulator of the non-canonical NF-kappaB pathway by mediating the deubiquitination of TRAF3, an inhibitor of the NF-kappaB pathway, resulting in preventing TRAF3 proteolysis and over-activation of non-canonical NF-kappaB. VCIP135 controls Golgi membrane dynamics in the cell cycle and is required for Golgi and ER assembly. This group belongs to the OTU family of cysteine proteases that use a conserved cysteine and histidine, and in most cases an aspartate, as the catalytic triad.


Pssm-ID: 438587  Cd Length: 185  Bit Score: 217.21  E-value: 5.73e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1058053549 124 LEQAGHLNWwTTLCHKLWPLSTSGDGNCLLHAASLGMWGFHDRLLTLRKSLHAFLSQSPRREALwRRWRRQQSILNAQAG 203
Cdd:cd22750     7 LESEKVINW-CRGVSRLVPLHTRGDGNCLLHAVSLALWGVEDRDLLLRSALHETLQNDQERRFR-ARWRRQQLKSGQELG 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1058053549 204 LVYSEIEWRREWNAIVNMASTEPRlrrlsiasdqsgelSGAIYESLEEIHVLALAHVLRRPIIVVADTMLRDMNGEPLAP 283
Cdd:cd22750    85 LSLDEEALQAEWEEILKAAETPTV--------------PAGPGSYLEEIHIFVLANVLRRPIIVLADDSARSLEGSALQD 150

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1058053549 284 IPFGGIYLPLECSSSECHRSPLLLAYDGGHFSALV 318
Cdd:cd22750   151 NGMSGIYLPLLWPPSECSRSPLALGYSNGHFSPLV 185
OTU_ZRANB1 cd22767
OTU (ovarian tumor) domain of Ubiquitin thioesterase ZRANB1 and similar proteins; ZRANB1 is ...
 121-319 8.22e-44

OTU (ovarian tumor) domain of Ubiquitin thioesterase ZRANB1 and similar proteins; ZRANB1 is also called TRAF-binding domain-containing protein, Trabid, or zinc finger Ran-binding domain-containing protein 1. It is a deubiquitinase (DUB)/ubiquitin thioesterase (EC 3.4.19.12) that specifically hydrolyzes 'Lys-29'-linked and 'Lys-33'-linked diubiquitin; it also cleaves 'Lys-63'-linked chains with less efficiency. ZRANB1 binds, deubiquitinates, and stabilizes EZH2, which is the catalytic component of the Polycomb repressive complex 2 (PRC2) that silences gene transcription by methylating histone H3 at lysine 27 and is mutated or highly expressed in many types of cancer, including lymphoma, melanoma, prostate cancer, ovarian cancer, and breast cancer. Drosophila Trabid interacts with TGF-beta Activating Kinase 1 (TAK1), which triggers both immunity and apoptosis, resulting in reduced immune signaling output and K63-linked ubiquitination. ZRANB1 belongs to the OTU family of cysteine proteases that use a conserved cysteine and histidine, and in most cases an aspartate, as the catalytic triad. ZRANB1 does not contain the conserved aspartate, and uses cysteine and histidine as a catalytic dyad. It is classified as a family C64 cysteine protease by MEROPS.


Pssm-ID: 438604  Cd Length: 185  Bit Score: 153.61  E-value: 8.22e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1058053549 121 QLSLEQAGH-LNWWTTLCH----KLWPLSTSGDGNCLLHAASLGMWGFHDRLLTLRKSLHAFLSQSPRReaLWRRWRRQQ 195
Cdd:cd22767     4 QKELEEESPiINWSLELTDrlgsRLYALWNRTAGDCLLDSVLQATWGVFDRDNVLRRALADSLHDCAHW--FYSRWKEYE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1058053549 196 SILNAQAGLVYSEIEWRREWNAIVNMASteprlrrlsiasdQSGElsgaiyeSLEEIHVLALAHVLRRPIIVVADTMLRD 275
Cdd:cd22767    82 SWQAQSLGYSLEEEQWQKDWAFLLSLAS-------------QPGA-------SLEQTHIFALAHILRRPIIVYGVKYVKS 141

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1058053549 276 MNGEPLAPIPFGGIYLPLECSSSECHRSPLLLAYDGGHFSALVA 319
Cdd:cd22767   142 FRGETLGYARFQGVYLPLLWEQSFCWKSPIALGYTRGHFSALVP 185
OTU pfam02338
OTU-like cysteine protease; This family is comprised of a group of predicted cysteine ...
 147-314 7.44e-20

OTU-like cysteine protease; This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases.


Pssm-ID: 426728 [Multi-domain]  Cd Length: 127  Bit Score: 85.58  E-value: 7.44e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1058053549 147 GDGNCLLHAASLGMWGFHDrllTLRKSLHAFLsqsprREALWRRWRRQQSILnaqaglvysEIEWRREWNAIVNMAStep 226
Cdd:pfam02338   2 GDGNCLYRSISHQLWGVHD---VLRKMLVQEL-----RETLAEYMREHKEEF---------EPFLEDDETGDIIEIE--- 61

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1058053549 227 rlrrlsiasdQSGElsgaiyeSLEEIHVLALAHVLRRPIIVvadtmLRDMNGEPLAPIPFGGIYLPLECSSSECHRSPLL 306
Cdd:pfam02338  62 ----------QTGA-------WGGEIEIFALAHILRRPIIV-----YKSEGGEELGGLKEYGIYLPLGWDPSLCLVYPRH 119


                  ....*...
gi 1058053549 307 LAYDGGHF 314
Cdd:pfam02338 120 LYYLGGHY 127
ZnF_A20 smart00259
A20-like zinc fingers; A20- (an inhibitor of cell death)-like zinc fingers. The zinc finger ...
 514-537 6.25e-09

A20-like zinc fingers; A20- (an inhibitor of cell death)-like zinc fingers. The zinc finger mediates self-association in A20. These fingers also mediate IL-1-induced NF-kappaB activation.


Pssm-ID: 128555  Cd Length: 26  Bit Score: 51.43  E-value: 6.25e-09
                           10        20
                   ....*....|....*....|....
gi 1058053549  514 LCQTPGCVFFGNPQTKNFCSKCFR 537
Cdd:smart00259   3 KCRRPGCGFFGNPATEGLCSKCFK 26
zf-A20 pfam01754
A20-like zinc finger; The A20 Zn-finger of bovine/human Rabex5/rabGEF1 is a Ubiquitin Binding ...
 514-537 3.21e-07

A20-like zinc finger; The A20 Zn-finger of bovine/human Rabex5/rabGEF1 is a Ubiquitin Binding Domain. The zinc finger mediates self-association in A20. These fingers also mediate IL-1-induced NF-kappa B activation.


Pssm-ID: 460313  Cd Length: 24  Bit Score: 46.34  E-value: 3.21e-07
                          10        20
                  ....*....|....*....|....
gi 1058053549 514 LCQTpGCVFFGNPQTKNFCSKCFR 537
Cdd:pfam01754   2 LCRN-GCGFYGSPATNGLCSKCYK 24
OTU cd22744
OTU (ovarian tumor) domain family; The OTU family of cysteine proteases use a conserved ...
 145-317 8.30e-07

OTU (ovarian tumor) domain family; The OTU family of cysteine proteases use a conserved cysteine and histidine, and in most cases an aspartate, as the catalytic triad. OTU domains typically function as deubiquitinases (DUBs)/ubiquitin thiolesterases (EC 3.4.19.12) that catalyze the thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin, a small regulatory protein that can be conjugated to a large range of target proteins. Protein ubiquitination is a post-translational modification of mostly Lys residues that regulates many cellular processes, including protein degradation, intracellular trafficking, cell signaling, autophagy, transcription, translation, and the DNA damage response. These DUBs may play important regulatory roles at the level of protein turnover by preventing degradation.


Pssm-ID: 438581 [Multi-domain]  Cd Length: 128  Bit Score: 48.20  E-value: 8.30e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1058053549 145 TSGDGNCLLHAASLGMWGFHDRLLTLRKSLHAFLSQSPrrealwrrwrrqqsilnaqaglvysEIEWRREWNAIVNMAST 224
Cdd:cd22744     5 VPGDGNCLFRALAHALYGDQESHRELRQEVVDYLRENP-------------------------DLYEPAELADEDDGEDF 59

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1058053549 225 EPRLRRLSiasdQSGELSGaiyesleEIHVLALAHVLRRPIIVVadtmlrDMNGEPLAPIPFGGiylplecsSSECHRSP 304
Cdd:cd22744    60 DEYLQRMR----KPGTWGG-------ELELQALANALNVPIVVY------SEDGGFLPVSVFGP--------GPGPSGRP 114

                         170
                  ....*....|....
gi 1058053549 305 LLLAYDG-GHFSAL 317
Cdd:cd22744   115 IHLLYTGgNHYDAL 128
OTU_VCIP135 cd22769
OTU (ovarian tumor) domain of deubiquitinating protein VCIP135; Deubiquitinating protein ...
 140-319 1.45e-06

OTU (ovarian tumor) domain of deubiquitinating protein VCIP135; Deubiquitinating protein VCIP135 is also called valosin-containing protein p97/p47 complex-interacting protein 1, valosin-containing protein p97/p47 complex-interacting protein p135, or VCP/p47 complex-interacting 135-kDa protein. It is a deubiquitinase (DUB)/ubiquitin thioesterase (EC 3.4.19.12) that hydrolyzes 'Lys-11'- and 'Lys-48'-linked polyubiquitin chains. It is necessary for VCP-mediated reassembly of Golgi stacks after mitosis, and may play a role in VCP-mediated formation of transitional endoplasmic reticulum (tER). VCIP135 controls Golgi membrane dynamics in the cell cycle and is required for Golgi and ER assembly. It belongs to the OTU family of cysteine proteases that use a conserved cysteine and histidine, and in most cases an aspartate, as the catalytic triad. Not all members of this subfamily contain the active site. It is closely related to proteins classified as family C64 cysteine protease by MEROPS, such as TNFAIP3, ZRANB1, and OTUD7A/B.


Pssm-ID: 438606  Cd Length: 197  Bit Score: 48.83  E-value: 1.45e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1058053549 140 LWPLSTSGDGNCLLHAASLGMWGfhdRLL---TLRKSL-HAFLSQSPRREALWRrwrrqqsilnaqaGLVYSEiewrrEW 215
Cdd:cd22769    45 LIPIHADGDGHCLVHAVSRALVG---RELfwhALRENLkQHFKENLDQYKALFQ-------------DFIDDS-----EW 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1058053549 216 NAIVNMASTE--PRlrrlsiasdqSGELSGaiyesLEEIHVLALAHVLRRPIIVVaDTmLRDMNgeplAPIPFGGIYLPL 293
Cdd:cd22769   104 PDIIAECDPDfvPP----------EGEPLG-----LRNIHIFGLANVLKRPIILL-DS-LSGMQ----SSGDYSAIFLPG 162

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1058053549 294 ECSSSECH------RSPLLLAYDG---GHFSALVA 319
Cdd:cd22769   163 LVPPEKCRgkdgllNKPICIAWSSsgrNHFIPLVG 197
OTU_VRTN cd22791
OTU (ovarian tumor) domain of vertnin and similar proteins; Vertnin (VRTN) is an OTU ...
 142-169 5.82e-04

OTU (ovarian tumor) domain of vertnin and similar proteins; Vertnin (VRTN) is an OTU domain-containing protein that is required for the development of thoracic vertebrae in mammals. OTU domains typically function as deubiquitinases (DUBs)/ubiquitin thiolesterases (EC 3.4.19.12) that catalyze the thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin, a small regulatory protein that can be conjugated to a large range of target proteins. Protein ubiquitination is a post-translational modification of mostly Lys residues that regulates many cellular processes, including protein degradation, intracellular trafficking, cell signaling, autophagy, transcription, translation, and the DNA damage response. These DUBs may play important regulatory roles at the level of protein turnover by preventing degradation. Vertnin and some subfamily members do not possess the conserved catalytic residues and may not have DUB activity. VRTN gene is associated with variations in vertebral number.


Pssm-ID: 438612  Cd Length: 137  Bit Score: 40.28  E-value: 5.82e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1058053549 142 PLSTSGDGNCLLHAASLGMWG---FHD--RLLT 169
Cdd:cd22791     3 PLRVTGDGNCLFRAASLLLFGdesLHLelRLRT 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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