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Conserved domains on  [gi|950750481|gb|JAO02948|]
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procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 precursor [Heterocephalus glaber]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GT_LH3 cd23002
catalytic glycosyltransferase (GT) domain found in lysyl hydroxylase 3 (LH3) and similar ...
 40-269 9.42e-179

catalytic glycosyltransferase (GT) domain found in lysyl hydroxylase 3 (LH3) and similar proteins; Lysyl hydroxylase 3 (LH3; EC 1.14.11.4/EC 2.4.1.50/EC 2.4.1.66), also called procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 (PLOD3), or multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3, is a multifunctional enzyme that catalyzes a series of essential post-translational modifications on Lys residues in procollagen. It converts collagen lysines into 1,2-glucosylgalactosyl-5-hydroxylysines through three consecutive reactions: hydroxylation of collagen lysines (LH activity), N-linked conjugation of galactose to hydroxylysines (GT activity), and conjugation of glucose to galactosyl-5-hydroxylysines (GGT activity). LH3 monomer encompasses three domains; the first two N-terminal domains (catalytic glycosyltransferase domain and accessory domain) show Rossmann-fold architectures reminiscent of glycosyltransferases, whereas the C-terminal domain is characterized by a double-stranded beta-helix (DSBH) fold, highly conserved among the 2-oxoglutarate, Fe2+-dependent dioxygenases. This model corresponds to the N-terminal catalytic glycosyltransferase (GT) domain, which is solely responsible for glycosyltransferase activities (both GT and GGT).


:

Pssm-ID: 438558  Cd Length: 230  Bit Score: 509.74  E-value: 9.42e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481  40 EKLLVITVATAETEGYRRFLQTAEFFNYTVRTLGLGKEWRGGDVARTVGGGQKVRWLKKEMEKYADQEDMIIMFVDSYDV 119
Cdd:cd23002    1 EKLLVITVATAETEGYLRFLRTAEFFNYTVRTLGLGEEWRGGDVARTVGGGQKVRWLKKEMEKYADREDMIIMFVDSYDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481 120 ILAGSPTELLKKFVQSSSRLLFSAEGFCWPDWGLAEQYPEVGTGKRFLNSGGFIGFAPTIHQIVHQWKYKDDDDDQLFYT 199
Cdd:cd23002   81 ILAGSPTELLKKFVQSGSRLLFSAESFCWPEWGLAEQYPEVGTGKRFLNSGGFIGFATTIHQIVQQWKYKDDDDDQLFYT 160

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481 200 RLYLDPGLREKFSLNLDHKSRIFQNLNGALDEVVLKFDRNRVRIRNVAYDTLPVVVHGNGPTKLQLNYLG 269
Cdd:cd23002  161 RLYLDPGLREKFSLNLDHKSRIFQNLNGALDEVVLKFDRNRVRIRNVAYDTLPIVVHGNGPTKLQLNYLG 230
P4Hc smart00702
Prolyl 4-hydroxylase alpha subunit homologues; Mammalian enzymes catalyse hydroxylation of ...
 576-739 3.37e-22

Prolyl 4-hydroxylase alpha subunit homologues; Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.


:

Pssm-ID: 214780  Cd Length: 165  Bit Score: 93.99  E-value: 3.37e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481   576 SEQMCDELVEEMENYGqWSGGRHEDSRLAGgyenvptVDIHMKQVG---YEDQWLQLLRTYVGPMTEHLFPG-YHTKTRA 651
Cdd:smart00702   1 SPAECQKLLEEAEPLG-WRGEVTRGIGNPN-------ETSQYRQSNgtwLELLERDLVIERIRQRLADFLGLlAGLPLSA 72

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481   652 VMNFVVRYRPDeqPSLRPHHD-----SSTFTLNVALNHkglDYEGGGCRFLR---YNCIISSPRKGWGLLHP-GRLTHYH 722
Cdd:smart00702  73 EDAQVARYGPG--GHYGPHVDnflygDRIATFILYLND---VEEGGELVFPGlrlMVVATVKPKKGDLLFFPsGHGRSLH 147

                          170
                   ....*....|....*..
gi 950750481   723 EGLPTTRGTRYIMVSFV 739
Cdd:smart00702 148 GVCPVTRGSRWAITGWI 164
Glyco_tranf_2_3 super family cl38428
Glycosyltransferase like family 2; Members of this family of prokaryotic proteins include ...
 298-458 2.08e-03

Glycosyltransferase like family 2; Members of this family of prokaryotic proteins include putative glucosyltransferase, which are involved in bacterial capsule biosynthesis.


The actual alignment was detected with superfamily member pfam13641:

Pssm-ID: 433372 [Multi-domain]  Cd Length: 230  Bit Score: 40.43  E-value: 2.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481  298 PPRVLLAVFVEQPTPFLPRFLQRLLLLDYPPDRVTLFLHNSEVyhepHIADSWPQLQDHFESVKL--VGPEEDLSPGEAR 375
Cdd:pfam13641   1 PPDVSVVVPAFNEDSVLGRVLEAILAQPYPPVEVVVVVNPSDA----ETLDVAEEIAARFPDVRLrvIRNARLLGPTGKS 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481  376 DMAMDTCRQdpeCEFYFSL--DADAVL---TNQQTLRILIEQNRKVI-APMLSRHGKLWSNFWGALSPDEYYARsedyvE 449
Cdd:pfam13641  77 RGLNHGFRA---VKSDLVVlhDDDSVLhpgTLKKYVQYFDSPKVGAVgTPVFSLNRSTMLSALGALEFALRHLR-----M 148


                  ....*....
gi 950750481  450 LVQRKRLGV 458
Cdd:pfam13641 149 MSLRLALGV 157
 
Name Accession Description Interval E-value
GT_LH3 cd23002
catalytic glycosyltransferase (GT) domain found in lysyl hydroxylase 3 (LH3) and similar ...
 40-269 9.42e-179

catalytic glycosyltransferase (GT) domain found in lysyl hydroxylase 3 (LH3) and similar proteins; Lysyl hydroxylase 3 (LH3; EC 1.14.11.4/EC 2.4.1.50/EC 2.4.1.66), also called procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 (PLOD3), or multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3, is a multifunctional enzyme that catalyzes a series of essential post-translational modifications on Lys residues in procollagen. It converts collagen lysines into 1,2-glucosylgalactosyl-5-hydroxylysines through three consecutive reactions: hydroxylation of collagen lysines (LH activity), N-linked conjugation of galactose to hydroxylysines (GT activity), and conjugation of glucose to galactosyl-5-hydroxylysines (GGT activity). LH3 monomer encompasses three domains; the first two N-terminal domains (catalytic glycosyltransferase domain and accessory domain) show Rossmann-fold architectures reminiscent of glycosyltransferases, whereas the C-terminal domain is characterized by a double-stranded beta-helix (DSBH) fold, highly conserved among the 2-oxoglutarate, Fe2+-dependent dioxygenases. This model corresponds to the N-terminal catalytic glycosyltransferase (GT) domain, which is solely responsible for glycosyltransferase activities (both GT and GGT).


Pssm-ID: 438558  Cd Length: 230  Bit Score: 509.74  E-value: 9.42e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481  40 EKLLVITVATAETEGYRRFLQTAEFFNYTVRTLGLGKEWRGGDVARTVGGGQKVRWLKKEMEKYADQEDMIIMFVDSYDV 119
Cdd:cd23002    1 EKLLVITVATAETEGYLRFLRTAEFFNYTVRTLGLGEEWRGGDVARTVGGGQKVRWLKKEMEKYADREDMIIMFVDSYDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481 120 ILAGSPTELLKKFVQSSSRLLFSAEGFCWPDWGLAEQYPEVGTGKRFLNSGGFIGFAPTIHQIVHQWKYKDDDDDQLFYT 199
Cdd:cd23002   81 ILAGSPTELLKKFVQSGSRLLFSAESFCWPEWGLAEQYPEVGTGKRFLNSGGFIGFATTIHQIVQQWKYKDDDDDQLFYT 160

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481 200 RLYLDPGLREKFSLNLDHKSRIFQNLNGALDEVVLKFDRNRVRIRNVAYDTLPVVVHGNGPTKLQLNYLG 269
Cdd:cd23002  161 RLYLDPGLREKFSLNLDHKSRIFQNLNGALDEVVLKFDRNRVRIRNVAYDTLPIVVHGNGPTKLQLNYLG 230
P4Hc smart00702
Prolyl 4-hydroxylase alpha subunit homologues; Mammalian enzymes catalyse hydroxylation of ...
 576-739 3.37e-22

Prolyl 4-hydroxylase alpha subunit homologues; Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.


Pssm-ID: 214780  Cd Length: 165  Bit Score: 93.99  E-value: 3.37e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481   576 SEQMCDELVEEMENYGqWSGGRHEDSRLAGgyenvptVDIHMKQVG---YEDQWLQLLRTYVGPMTEHLFPG-YHTKTRA 651
Cdd:smart00702   1 SPAECQKLLEEAEPLG-WRGEVTRGIGNPN-------ETSQYRQSNgtwLELLERDLVIERIRQRLADFLGLlAGLPLSA 72

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481   652 VMNFVVRYRPDeqPSLRPHHD-----SSTFTLNVALNHkglDYEGGGCRFLR---YNCIISSPRKGWGLLHP-GRLTHYH 722
Cdd:smart00702  73 EDAQVARYGPG--GHYGPHVDnflygDRIATFILYLND---VEEGGELVFPGlrlMVVATVKPKKGDLLFFPsGHGRSLH 147

                          170
                   ....*....|....*..
gi 950750481   723 EGLPTTRGTRYIMVSFV 739
Cdd:smart00702 148 GVCPVTRGSRWAITGWI 164
Glyco_tranf_2_3 pfam13641
Glycosyltransferase like family 2; Members of this family of prokaryotic proteins include ...
 298-458 2.08e-03

Glycosyltransferase like family 2; Members of this family of prokaryotic proteins include putative glucosyltransferase, which are involved in bacterial capsule biosynthesis.


Pssm-ID: 433372 [Multi-domain]  Cd Length: 230  Bit Score: 40.43  E-value: 2.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481  298 PPRVLLAVFVEQPTPFLPRFLQRLLLLDYPPDRVTLFLHNSEVyhepHIADSWPQLQDHFESVKL--VGPEEDLSPGEAR 375
Cdd:pfam13641   1 PPDVSVVVPAFNEDSVLGRVLEAILAQPYPPVEVVVVVNPSDA----ETLDVAEEIAARFPDVRLrvIRNARLLGPTGKS 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481  376 DMAMDTCRQdpeCEFYFSL--DADAVL---TNQQTLRILIEQNRKVI-APMLSRHGKLWSNFWGALSPDEYYARsedyvE 449
Cdd:pfam13641  77 RGLNHGFRA---VKSDLVVlhDDDSVLhpgTLKKYVQYFDSPKVGAVgTPVFSLNRSTMLSALGALEFALRHLR-----M 148


                  ....*....
gi 950750481  450 LVQRKRLGV 458
Cdd:pfam13641 149 MSLRLALGV 157
2OG-FeII_Oxy_3 pfam13640
2OG-Fe(II) oxygenase superfamily; This family contains members of the 2-oxoglutarate (2OG) and ...
 656-739 3.95e-03

2OG-Fe(II) oxygenase superfamily; This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.


Pssm-ID: 463943  Cd Length: 94  Bit Score: 37.36  E-value: 3.95e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481  656 VVRYRPDEQpsLRPHHDSST---------FTLNVALNhKGLDYEGGGCRFLRYNCIIS-SPRKGWGLLHPGRLTHYHEGL 725
Cdd:pfam13640   3 LARYGDGGF--YKPHLDFFEgaegggqrrLTVVLYLN-DWEEEEGGELVLYDGDGVEDiKPKKGRLVLFPSSELSLHEVL 79

                          90
                  ....*....|....
gi 950750481  726 PTTRGTRYIMVSFV 739
Cdd:pfam13640  80 PVTGGERWSITGWF 93
 
Name Accession Description Interval E-value
GT_LH3 cd23002
catalytic glycosyltransferase (GT) domain found in lysyl hydroxylase 3 (LH3) and similar ...
 40-269 9.42e-179

catalytic glycosyltransferase (GT) domain found in lysyl hydroxylase 3 (LH3) and similar proteins; Lysyl hydroxylase 3 (LH3; EC 1.14.11.4/EC 2.4.1.50/EC 2.4.1.66), also called procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 (PLOD3), or multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3, is a multifunctional enzyme that catalyzes a series of essential post-translational modifications on Lys residues in procollagen. It converts collagen lysines into 1,2-glucosylgalactosyl-5-hydroxylysines through three consecutive reactions: hydroxylation of collagen lysines (LH activity), N-linked conjugation of galactose to hydroxylysines (GT activity), and conjugation of glucose to galactosyl-5-hydroxylysines (GGT activity). LH3 monomer encompasses three domains; the first two N-terminal domains (catalytic glycosyltransferase domain and accessory domain) show Rossmann-fold architectures reminiscent of glycosyltransferases, whereas the C-terminal domain is characterized by a double-stranded beta-helix (DSBH) fold, highly conserved among the 2-oxoglutarate, Fe2+-dependent dioxygenases. This model corresponds to the N-terminal catalytic glycosyltransferase (GT) domain, which is solely responsible for glycosyltransferase activities (both GT and GGT).


Pssm-ID: 438558  Cd Length: 230  Bit Score: 509.74  E-value: 9.42e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481  40 EKLLVITVATAETEGYRRFLQTAEFFNYTVRTLGLGKEWRGGDVARTVGGGQKVRWLKKEMEKYADQEDMIIMFVDSYDV 119
Cdd:cd23002    1 EKLLVITVATAETEGYLRFLRTAEFFNYTVRTLGLGEEWRGGDVARTVGGGQKVRWLKKEMEKYADREDMIIMFVDSYDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481 120 ILAGSPTELLKKFVQSSSRLLFSAEGFCWPDWGLAEQYPEVGTGKRFLNSGGFIGFAPTIHQIVHQWKYKDDDDDQLFYT 199
Cdd:cd23002   81 ILAGSPTELLKKFVQSGSRLLFSAESFCWPEWGLAEQYPEVGTGKRFLNSGGFIGFATTIHQIVQQWKYKDDDDDQLFYT 160

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481 200 RLYLDPGLREKFSLNLDHKSRIFQNLNGALDEVVLKFDRNRVRIRNVAYDTLPVVVHGNGPTKLQLNYLG 269
Cdd:cd23002  161 RLYLDPGLREKFSLNLDHKSRIFQNLNGALDEVVLKFDRNRVRIRNVAYDTLPIVVHGNGPTKLQLNYLG 230
GT_LH1 cd23004
catalytic glycosyltransferase (GT) domain found in lysyl hydroxylase 1 (LH1) and similar ...
 40-269 6.24e-128

catalytic glycosyltransferase (GT) domain found in lysyl hydroxylase 1 (LH1) and similar proteins; LH1 (EC 1.14.11.4), also called procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 (PLOD1), forms hydroxylysine residues in -Xaa-Lys-Gly- sequences in collagens. These hydroxylysines may serve as sites of attachment for carbohydrate units and are essential for the stability of the intermolecular collagen cross-links. LH1 is part of a complex composed of PLOD1, P3H3 and P3H4 that catalyzes hydroxylation of lysine residues in collagen alpha chains and is required for normal assembly and cross-linkling of collagen fibrils. This model corresponds to the N-terminal conserved domain of LH1, which shows high sequence similarity with catalytic glycosyltransferase (GT) domain of LH3.


Pssm-ID: 438560  Cd Length: 230  Bit Score: 379.53  E-value: 6.24e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481  40 EKLLVITVATAETEGYRRFLQTAEFFNYTVRTLGLGKEWRGGDVARTVGGGQKVRWLKKEMEKYADQEDMIIMFVDSYDV 119
Cdd:cd23004    1 ENLLVLTVATKETDGFRRFRRSAKFFNYKIQVLGLGEEWQGGDDMQPAGGGQKVRLLKSALEPYADKEDLVILFIESYDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481 120 ILAGSPTELLKKFVQSSSRLLFSAEGFCWPDWGLAEQYPEVGTGKRFLNSGGFIGFAPTIHQIVHQWKYKDDDDDQLFYT 199
Cdd:cd23004   81 IFASGPAELLKKFQQAKSKVVFSAENLIYPDRHLEAKYPHVRDGKRFLGSGGFIGYAPNLYKMVSDWSGQDDDSDQLFYT 160

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481 200 RLYLDPGLREKFSLNLDHKSRIFQNLNGALDEVVLKFDRNRVRIRNVAYDTLPVVVHGNGPTKLQLNYLG 269
Cdd:cd23004  161 KIFLDPEKREKINITLDHRCRIFQNLNGALDEVVLKFEDGRVRARNLLYDTLPVIIHGNGPTKLQLNYLG 230
GT_LH2 cd23003
catalytic glycosyltransferase (GT) domain found in lysyl hydroxylase 2 (LH2) and similar ...
 40-269 1.46e-125

catalytic glycosyltransferase (GT) domain found in lysyl hydroxylase 2 (LH2) and similar proteins; Lysyl hydroxylase 2 (LH2; EC 1.14.11.4), also called procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 (PLOD2), forms hydroxylysine residues in -Xaa-Lys-Gly- sequences in collagens. These hydroxylysines serve as sites of attachment for carbohydrate units and are essential for the stability of the intermolecular collagen cross-links. The model corresponds to the N-terminal conserved domain of LH2, which shows high sequence similarity with catalytic glycosyltransferase (GT) domain of LH3.


Pssm-ID: 438559  Cd Length: 230  Bit Score: 373.39  E-value: 1.46e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481  40 EKLLVITVATAETEGYRRFLQTAEFFNYTVRTLGLGKEWRGGDVARTVGGGQKVRWLKKEMEKYADQEDMIIMFVDSYDV 119
Cdd:cd23003    1 EKLLVLTVATKETDGFHRFMQSAKYFNYTVKVLGMGEEWKGGDVANSIGGGQKVRLLKEEMESLADQEDLVVLFTDSYDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481 120 ILAGSPTELLKKFVQSSSRLLFSAEGFCWPDWGLAEQYPEVGTGKRFLNSGGFIGFAPTIHQIVHQWKYKDDDDDQLFYT 199
Cdd:cd23003   81 IFAGGPEEVLKKFQQANHKVVFAAEGLIWPDKRLAEKYPVVRSGKRFLNSGGFIGYAPYINRIVQQWNLQDNDDDQLFYT 160

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481 200 RLYLDPGLREKFSLNLDHKSRIFQNLNGALDEVVLKFDRNRVRIRNVAYDTLPVVVHGNGPTKLQLNYLG 269
Cdd:cd23003  161 KIYIDPLQRESINITLDHKCRIFQNLNGAVDEVLLKFENGKARVRNTVYETLPVVIHGNGPTKLLLNYLG 230
GT_LH cd22997
catalytic glycosyltransferase (GT) domain found in the lysyl hydroxylase (LH) family; The ...
 44-260 1.18e-60

catalytic glycosyltransferase (GT) domain found in the lysyl hydroxylase (LH) family; The lysyl hydroxylase (LH) family includes LH1-3. LH1 (EC 1.14.11.4, also called procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 or PLOD1) and LH2 (EC 1.14.11.4, also called procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 or PLOD2) form hydroxylysine residues in -Xaa-Lys-Gly- sequences in collagens. These hydroxylysines may serve as sites of attachment for carbohydrate units and are essential for stability of the intermolecular collagen cross-links. LH1 is part of a complex composed of PLOD1, P3H3 and P3H4 that catalyzes hydroxylation of lysine residues in collagen alpha chains and is required for normal assembly and cross-linking of collagen fibrils. LH3 (EC 1.14.11.4/EC 2.4.1.50/EC 2.4.1.66), also called procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 (PLOD3), or multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3, is a multifunctional enzyme that catalyzes a series of essential post-translational modifications on Lys residues in procollagen. It converts collagen lysines into 1,2-glucosylgalactosyl-5-hydroxylysines through three consecutive reactions: hydroxylation of collagen lysines (LH activity), N-linked conjugation of galactose to hydroxylysines (GT activity), and conjugation of glucose to galactosyl-5-hydroxylysines (GGT activity). LH3 monomer encompasses three domains; the first two N-terminal domains (catalytic glycosyltransferase domain and accessory domain) show Rossmann-fold architectures reminiscent of glycosyltransferases, whereas the C-terminal domain is characterized by a double-stranded beta-helix (DSBH) fold, highly conserved among the 2-oxoglutarate, Fe2+-dependent dioxygenases. This model corresponds to the N-terminal catalytic glycosyltransferase (GT) domain, which is solely responsible for glycosyltransferase activities (both GT and GGT).


Pssm-ID: 438557  Cd Length: 247  Bit Score: 204.55  E-value: 1.18e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481  44 VITVATAETEGYRRFLQTAEFFNY-TVRTLGLGKEWRGGDVartvGGGQKVRWLKKEMEKYADQEDMIIMFVDSYDVILA 122
Cdd:cd22997    2 VLTPATKPNDGLCRTLLSAALLGYpPPTVLGWGEKWKGGDG----GHGAKIRLLLEYLESLKLPDDDLVLFVDGYDVWFQ 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481 123 GSPTELLKKFVQS-----SSRLLFSAEGFCWPDWGLAEQYPEV----------------GTGKRFLNSGGFIGFAPTIHQ 181
Cdd:cd22997   78 LPPEELLERFLALnaaaiRQPIVFSAEKNCWPDDSLAPAYPAVppsplppdidddldssKTRPRYLNSGGIIGRAGDLRE 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481 182 IVHQW-----KYKDDDDDQLFYTRLYLD-PGLREKFSLNLDHKSRIFQNLNGALDEVVLKFDRNRV-----RIRNVAYDT 250
Cdd:cd22997  158 LLEAAlelieDEKDWDDDQLVFTELYLEqEYWRYEFGIGLDYESELFQTLNGSESDLELLSYDDPPplgesRLRNTVTGT 237

                        250
                 ....*....|
gi 950750481 251 LPVVVHGNGP 260
Cdd:cd22997  238 VPVVLHFNGP 247
P4Hc smart00702
Prolyl 4-hydroxylase alpha subunit homologues; Mammalian enzymes catalyse hydroxylation of ...
 576-739 3.37e-22

Prolyl 4-hydroxylase alpha subunit homologues; Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.


Pssm-ID: 214780  Cd Length: 165  Bit Score: 93.99  E-value: 3.37e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481   576 SEQMCDELVEEMENYGqWSGGRHEDSRLAGgyenvptVDIHMKQVG---YEDQWLQLLRTYVGPMTEHLFPG-YHTKTRA 651
Cdd:smart00702   1 SPAECQKLLEEAEPLG-WRGEVTRGIGNPN-------ETSQYRQSNgtwLELLERDLVIERIRQRLADFLGLlAGLPLSA 72

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481   652 VMNFVVRYRPDeqPSLRPHHD-----SSTFTLNVALNHkglDYEGGGCRFLR---YNCIISSPRKGWGLLHP-GRLTHYH 722
Cdd:smart00702  73 EDAQVARYGPG--GHYGPHVDnflygDRIATFILYLND---VEEGGELVFPGlrlMVVATVKPKKGDLLFFPsGHGRSLH 147

                          170
                   ....*....|....*..
gi 950750481   723 EGLPTTRGTRYIMVSFV 739
Cdd:smart00702 148 GVCPVTRGSRWAITGWI 164
Glyco_tranf_2_3 pfam13641
Glycosyltransferase like family 2; Members of this family of prokaryotic proteins include ...
 298-458 2.08e-03

Glycosyltransferase like family 2; Members of this family of prokaryotic proteins include putative glucosyltransferase, which are involved in bacterial capsule biosynthesis.


Pssm-ID: 433372 [Multi-domain]  Cd Length: 230  Bit Score: 40.43  E-value: 2.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481  298 PPRVLLAVFVEQPTPFLPRFLQRLLLLDYPPDRVTLFLHNSEVyhepHIADSWPQLQDHFESVKL--VGPEEDLSPGEAR 375
Cdd:pfam13641   1 PPDVSVVVPAFNEDSVLGRVLEAILAQPYPPVEVVVVVNPSDA----ETLDVAEEIAARFPDVRLrvIRNARLLGPTGKS 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481  376 DMAMDTCRQdpeCEFYFSL--DADAVL---TNQQTLRILIEQNRKVI-APMLSRHGKLWSNFWGALSPDEYYARsedyvE 449
Cdd:pfam13641  77 RGLNHGFRA---VKSDLVVlhDDDSVLhpgTLKKYVQYFDSPKVGAVgTPVFSLNRSTMLSALGALEFALRHLR-----M 148


                  ....*....
gi 950750481  450 LVQRKRLGV 458
Cdd:pfam13641 149 MSLRLALGV 157
2OG-FeII_Oxy_3 pfam13640
2OG-Fe(II) oxygenase superfamily; This family contains members of the 2-oxoglutarate (2OG) and ...
 656-739 3.95e-03

2OG-Fe(II) oxygenase superfamily; This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.


Pssm-ID: 463943  Cd Length: 94  Bit Score: 37.36  E-value: 3.95e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950750481  656 VVRYRPDEQpsLRPHHDSST---------FTLNVALNhKGLDYEGGGCRFLRYNCIIS-SPRKGWGLLHPGRLTHYHEGL 725
Cdd:pfam13640   3 LARYGDGGF--YKPHLDFFEgaegggqrrLTVVLYLN-DWEEEEGGELVLYDGDGVEDiKPKKGRLVLFPSSELSLHEVL 79

                          90
                  ....*....|....
gi 950750481  726 PTTRGTRYIMVSFV 739
Cdd:pfam13640  80 PVTGGERWSITGWF 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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