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Conserved domains on  [gi|2033785030|dbj|GIS73871|]
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MAG: hypothetical protein CM1200mP11_0860 [Nitrosopumilaceae archaeon]

Protein Classification

cytochrome c oxidase subunit II( domain architecture ID 1000211)

cytochrome c oxidase subunit II, part of the functional core of the enzyme, transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit I

CATH:  1.10.287.90|2.60.40.420
EC:  7.1.1.9
Gene Ontology:  GO:0042773|GO:0004129|GO:0005507
SCOP:  4002011|4002191

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CyoA super family cl34322
Heme/copper-type cytochrome/quinol oxidase, subunit 2 [Energy production and conversion];
40-86 3.86e-03

Heme/copper-type cytochrome/quinol oxidase, subunit 2 [Energy production and conversion];


The actual alignment was detected with superfamily member COG1622:

Pssm-ID: 441229 [Multi-domain]  Cd Length: 229  Bit Score: 34.03  E-value: 3.86e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2033785030  40 IWNLFYKMMTVAFITGSVVSGTIIWQVWRFRESHPKAKPTSYEGTDW 86
Cdd:COG1622    32 IDDLFWVSLIIMLVIFVLVFGLLLYFAIRYRRRKGDADPAQFHHNTK 78
 
Name Accession Description Interval E-value
CyoA COG1622
Heme/copper-type cytochrome/quinol oxidase, subunit 2 [Energy production and conversion];
40-86 3.86e-03

Heme/copper-type cytochrome/quinol oxidase, subunit 2 [Energy production and conversion];


Pssm-ID: 441229 [Multi-domain]  Cd Length: 229  Bit Score: 34.03  E-value: 3.86e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2033785030  40 IWNLFYKMMTVAFITGSVVSGTIIWQVWRFRESHPKAKPTSYEGTDW 86
Cdd:COG1622    32 IDDLFWVSLIIMLVIFVLVFGLLLYFAIRYRRRKGDADPAQFHHNTK 78
 
Name Accession Description Interval E-value
CyoA COG1622
Heme/copper-type cytochrome/quinol oxidase, subunit 2 [Energy production and conversion];
40-86 3.86e-03

Heme/copper-type cytochrome/quinol oxidase, subunit 2 [Energy production and conversion];


Pssm-ID: 441229 [Multi-domain]  Cd Length: 229  Bit Score: 34.03  E-value: 3.86e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2033785030  40 IWNLFYKMMTVAFITGSVVSGTIIWQVWRFRESHPKAKPTSYEGTDW 86
Cdd:COG1622    32 IDDLFWVSLIIMLVIFVLVFGLLLYFAIRYRRRKGDADPAQFHHNTK 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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