|
Name |
Accession |
Description |
Interval |
E-value |
| DAP2 |
COG1506 |
Dipeptidyl aminopeptidase/acylaminoacyl peptidase [Amino acid transport and metabolism]; |
428-653 |
9.14e-63 |
|
Dipeptidyl aminopeptidase/acylaminoacyl peptidase [Amino acid transport and metabolism];
Pssm-ID: 441115 [Multi-domain] Cd Length: 234 Bit Score: 208.72 E-value: 9.14e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 428 SYDGKKIQGWLVYPPNfdpNKKYPLILEIHGGPFTNYGFrFSAEVQLFASAGNLVLYTNPRGstsYGKDFanlihHNYPS 507
Cdd:COG1506 4 SADGTTLPGWLYLPAD---GKKYPVVVYVHGGPGSRDDS-FLPLAQALASRGYAVLAPDYRG---YGESA-----GDWGG 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 508 QDYDDLMSGVDHVIERGYVDENNLFVTGGSGGGVLTSWTIGK-TDRFKAAVVAKPVINWYSFvlyaDNISYFYKYWFPGM 586
Cdd:COG1506 72 DEVDDVLAAIDYLAARPYVDPDRIGIYGHSYGGYMALLAAARhPDRFKAAVALAGVSDLRSY----YGTTREYTERLMGG 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2033828802 587 PWDNLEEYMRRSPISYVKNVTTPTMLLTGEDDYRTPMAESEQYYAGLKLNKVESMLVRIPGADHGIA 653
Cdd:COG1506 148 PWEDPEAYAARSPLAYADKLKTPLLLIHGEADDRVPPEQAERLYEALKKAGKPVELLVYPGEGHGFS 214
|
|
| Peptidase_S9 |
pfam00326 |
Prolyl oligopeptidase family; |
466-654 |
4.70e-53 |
|
Prolyl oligopeptidase family;
Pssm-ID: 459761 [Multi-domain] Cd Length: 213 Bit Score: 182.04 E-value: 4.70e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 466 FRFSAEVQLFASAGNLVLYTNPRGSTSYGKDFANLIHHNYPSQDYDDLMSGVDHVIERGYVDENNLFVTGGSGGGVLTSW 545
Cdd:pfam00326 1 PSFSWNAQLLADRGYVVAIANGRGSGGYGEAFHDAGKGDLGQNEFDDFIAAAEYLIEQGYTDPDRLAIWGGSYGGYLTGA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 546 TIGK-TDRFKAAVVAKPVINWysfVLYADNISYFYKYWFPGM--PWDNLEEYMRRSPISYVKNV--TTPTMLLTGEDDYR 620
Cdd:pfam00326 81 ALNQrPDLFKAAVAHVPVVDW---LAYMSDTSLPFTERYMEWgnPWDNEEGYDYLSPYSPADNVkvYPPLLLIHGLLDDR 157
|
170 180 190
....*....|....*....|....*....|....
gi 2033828802 621 TPMAESEQYYAGLKLNKVESMLVRIPGADHGIAS 654
Cdd:pfam00326 158 VPPWQSLKLVAALQRKGVPFLLLIFPDEGHGIGK 191
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
39-356 |
1.14e-20 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 97.42 E-value: 1.14e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 39 YASDPQISPSGDKVLYLRNFKDIMTDRN-----LSNIWMVNFDGSASRPITTGNKNDFSPRWSnsGDRFIYKSNVDGSTQ 113
Cdd:COG4946 152 PAGDGSFSPDGKKLAYTRIGREFRTWKRyrggtAGDIWIYDLGTGEFTRLTDFGGNDRNPMWI--GDRIYFLSDRDGTFN 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 114 LYLYDINTSSTQKLT--------NMQSSIGNVIWSDDDR-YLLFTSfvEKTDNKL-IQMPKKPKGA--KWNEPPIEIDDM 181
Cdd:COG4946 230 LYSYDPDGKDLRQLThfkdfdvrFPSTDGGRIVYEQGGDlYLLDLA--SGEPRKLnITLAGDFPQRrpRWVDVSGYLTSF 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 182 VYRYDGggfRRSGST---QIFVLSSEGGTPRQLTEL-NNNIRSIEWMNNDK-VLFSanlsenSDfEPNNSDIYTLDI-PT 255
Cdd:COG4946 308 ALSPDG---KRVAFEargEVFTVPAEKGPTRNLTNTpGVRERLPAWSPDGKsIAYF------SD-ASGEYELYIAPAdGS 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 256 GEIKKLTE-RFGPDYAPKVSPDKKHIAYlgYDDKflgyqqNSLYVMDADGGDIKLV-SNGFDRNISNINWKEDGKGL-YF 332
Cdd:COG4946 378 GEPKQLTLgDLGRVFNPVWSPDGKKIAF--TDNR------GRLWVVDLASGKVRKVdTDGYGDGISDLAWSPDSKWLaYS 449
|
330 340
....*....|....*....|....*
gi 2033828802 333 QYDNEGMTKIAYISL-SGKVRDIVD 356
Cdd:COG4946 450 KPGPNQLSQIFLYDVeTGKTVQLTD 474
|
|
| propeller_TolB |
TIGR02800 |
tol-pal system beta propeller repeat protein TolB; Members of this protein family are the TolB ... |
68-385 |
2.73e-15 |
|
tol-pal system beta propeller repeat protein TolB; Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274305 [Multi-domain] Cd Length: 417 Bit Score: 78.47 E-value: 2.73e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 68 SNIWMVNFDGSASRPITTGNKNDFSPRWSNSGDRFIYKSNVDGSTQLYLYDINTSSTQKLTNMQSSIGNVIWSDDdryll 147
Cdd:TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPD----- 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 148 ftsfvektdnkliqmpkkpkgakwneppieiddmvyrydgggfrrsGSTQIFVLSSEGgtprqltelnnnirsiewmnnd 227
Cdd:TIGR02800 245 ----------------------------------------------GSKLAVSLSKDG---------------------- 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 228 kvlfsanlsensdfepnNSDIYTLDIPTGEIKKLTERFGPDYAPKVSPDKKHIAYLgyDDKfLGYQQnsLYVMDADGGDI 307
Cdd:TIGR02800 257 -----------------NPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFT--SDR-GGSPQ--IYMMDADGGEV 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 308 KLVSNGFDRNISNiNWKEDGKGLYFQYDNEGMTKIAYISLSGKVRDIVDElGGLSLGrPysggtyTISDNGR---YAFTY 384
Cdd:TIGR02800 315 RRLTFRGGYNASP-SWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD-TGLDES-P------SFAPNGRmilYATTR 385
|
.
gi 2033828802 385 G 385
Cdd:TIGR02800 386 G 386
|
|
| tolB |
PRK01029 |
Tol-Pal system protein TolB; |
14-150 |
3.50e-06 |
|
Tol-Pal system protein TolB;
Pssm-ID: 234889 [Multi-domain] Cd Length: 428 Bit Score: 50.15 E-value: 3.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 14 FVIFLTSAQGQISKtfdPIDIFEIEYA--SDPQISPSGDKVLYLRNfKDimtdrNLSNIWMVNFD--GSASRPITTGNKN 89
Cdd:PRK01029 258 FIQSFSLETGAIGK---PRRLLNEAFGtqGNPSFSPDGTRLVFVSN-KD-----GRPRIYIMQIDpeGQSPRLLTKKYRN 328
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2033828802 90 DFSPRWSNSGDRFIYKSNVDGSTQLYLYDINTSSTQKLTNMQSSIGNVIWSDDDRYLLFTS 150
Cdd:PRK01029 329 SSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSA 389
|
|
| PD40 |
pfam07676 |
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. ... |
81-115 |
2.83e-04 |
|
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. This repeat corresponds to the RIVW repeat identified in cell surface proteins [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16].
Pssm-ID: 429587 [Multi-domain] Cd Length: 37 Bit Score: 38.65 E-value: 2.83e-04
10 20 30
....*....|....*....|....*....|....*
gi 2033828802 81 RPITTGNKNDFSPRWSNSGDRFIYKSNVDGSTQLY 115
Cdd:pfam07676 2 GRLTNTPGNETAPSWSPDGKRLAFSSDRDGKPDIY 36
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DAP2 |
COG1506 |
Dipeptidyl aminopeptidase/acylaminoacyl peptidase [Amino acid transport and metabolism]; |
428-653 |
9.14e-63 |
|
Dipeptidyl aminopeptidase/acylaminoacyl peptidase [Amino acid transport and metabolism];
Pssm-ID: 441115 [Multi-domain] Cd Length: 234 Bit Score: 208.72 E-value: 9.14e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 428 SYDGKKIQGWLVYPPNfdpNKKYPLILEIHGGPFTNYGFrFSAEVQLFASAGNLVLYTNPRGstsYGKDFanlihHNYPS 507
Cdd:COG1506 4 SADGTTLPGWLYLPAD---GKKYPVVVYVHGGPGSRDDS-FLPLAQALASRGYAVLAPDYRG---YGESA-----GDWGG 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 508 QDYDDLMSGVDHVIERGYVDENNLFVTGGSGGGVLTSWTIGK-TDRFKAAVVAKPVINWYSFvlyaDNISYFYKYWFPGM 586
Cdd:COG1506 72 DEVDDVLAAIDYLAARPYVDPDRIGIYGHSYGGYMALLAAARhPDRFKAAVALAGVSDLRSY----YGTTREYTERLMGG 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2033828802 587 PWDNLEEYMRRSPISYVKNVTTPTMLLTGEDDYRTPMAESEQYYAGLKLNKVESMLVRIPGADHGIA 653
Cdd:COG1506 148 PWEDPEAYAARSPLAYADKLKTPLLLIHGEADDRVPPEQAERLYEALKKAGKPVELLVYPGEGHGFS 214
|
|
| Peptidase_S9 |
pfam00326 |
Prolyl oligopeptidase family; |
466-654 |
4.70e-53 |
|
Prolyl oligopeptidase family;
Pssm-ID: 459761 [Multi-domain] Cd Length: 213 Bit Score: 182.04 E-value: 4.70e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 466 FRFSAEVQLFASAGNLVLYTNPRGSTSYGKDFANLIHHNYPSQDYDDLMSGVDHVIERGYVDENNLFVTGGSGGGVLTSW 545
Cdd:pfam00326 1 PSFSWNAQLLADRGYVVAIANGRGSGGYGEAFHDAGKGDLGQNEFDDFIAAAEYLIEQGYTDPDRLAIWGGSYGGYLTGA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 546 TIGK-TDRFKAAVVAKPVINWysfVLYADNISYFYKYWFPGM--PWDNLEEYMRRSPISYVKNV--TTPTMLLTGEDDYR 620
Cdd:pfam00326 81 ALNQrPDLFKAAVAHVPVVDW---LAYMSDTSLPFTERYMEWgnPWDNEEGYDYLSPYSPADNVkvYPPLLLIHGLLDDR 157
|
170 180 190
....*....|....*....|....*....|....
gi 2033828802 621 TPMAESEQYYAGLKLNKVESMLVRIPGADHGIAS 654
Cdd:pfam00326 158 VPPWQSLKLVAALQRKGVPFLLLIFPDEGHGIGK 191
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
39-356 |
1.14e-20 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 97.42 E-value: 1.14e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 39 YASDPQISPSGDKVLYLRNFKDIMTDRN-----LSNIWMVNFDGSASRPITTGNKNDFSPRWSnsGDRFIYKSNVDGSTQ 113
Cdd:COG4946 152 PAGDGSFSPDGKKLAYTRIGREFRTWKRyrggtAGDIWIYDLGTGEFTRLTDFGGNDRNPMWI--GDRIYFLSDRDGTFN 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 114 LYLYDINTSSTQKLT--------NMQSSIGNVIWSDDDR-YLLFTSfvEKTDNKL-IQMPKKPKGA--KWNEPPIEIDDM 181
Cdd:COG4946 230 LYSYDPDGKDLRQLThfkdfdvrFPSTDGGRIVYEQGGDlYLLDLA--SGEPRKLnITLAGDFPQRrpRWVDVSGYLTSF 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 182 VYRYDGggfRRSGST---QIFVLSSEGGTPRQLTEL-NNNIRSIEWMNNDK-VLFSanlsenSDfEPNNSDIYTLDI-PT 255
Cdd:COG4946 308 ALSPDG---KRVAFEargEVFTVPAEKGPTRNLTNTpGVRERLPAWSPDGKsIAYF------SD-ASGEYELYIAPAdGS 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 256 GEIKKLTE-RFGPDYAPKVSPDKKHIAYlgYDDKflgyqqNSLYVMDADGGDIKLV-SNGFDRNISNINWKEDGKGL-YF 332
Cdd:COG4946 378 GEPKQLTLgDLGRVFNPVWSPDGKKIAF--TDNR------GRLWVVDLASGKVRKVdTDGYGDGISDLAWSPDSKWLaYS 449
|
330 340
....*....|....*....|....*
gi 2033828802 333 QYDNEGMTKIAYISL-SGKVRDIVD 356
Cdd:COG4946 450 KPGPNQLSQIFLYDVeTGKTVQLTD 474
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
192-356 |
1.26e-19 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 86.26 E-value: 1.26e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 192 RSGSTQIFVLSSEGGTPRQLTELNNNIRSIEWM-NNDKVLFSANlsensdfEPNNSDIYTLDIPTGEIKKLTERFGPDYA 270
Cdd:COG0823 7 RDGNSDIYVVDLDGGEPRRLTNSPGIDTSPAWSpDGRRIAFTSD-------RGGGPQIYVVDADGGEPRRLTFGGGYNAS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 271 PKVSPDKKHIAYLGYDDkflgyQQNSLYVMDADGGDIKLVSNGFdrniSNINWKEDGKGLYFQYDNEGMTKIAYISLSGK 350
Cdd:COG0823 80 PSWSPDGKRLAFVSRSD-----GRFDIYVLDLDGGAPRRLTDGP----GSPSWSPDGRRIVFSSDRGGRPDLYVVDLDGR 150
|
....*.
gi 2033828802 351 VRDIVD 356
Cdd:COG0823 151 KRRLTP 156
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
68-263 |
2.75e-19 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 85.11 E-value: 2.75e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 68 SNIWMVNFDGSASRPITTGNKNDFSPRWSNSGDRFIYKSNVDGSTQLYLYDINTSSTQKLTNMQSSIGNVIWSDDDRYLL 147
Cdd:COG0823 11 SDIYVVDLDGGEPRRLTNSPGIDTSPAWSPDGRRIAFTSDRGGGPQIYVVDADGGEPRRLTFGGGYNASPSWSPDGKRLA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 148 FTSfvektdnkliqmpkkpkgakwneppieiddmvyrydgggfRRSGSTQIFVLSSEGGTPRQLTelnNNIRSIEW-MNN 226
Cdd:COG0823 91 FVS----------------------------------------RSDGRFDIYVLDLDGGAPRRLT---DGPGSPSWsPDG 127
|
170 180 190
....*....|....*....|....*....|....*..
gi 2033828802 227 DKVLFSANlsensdfEPNNSDIYTLDIpTGEIKKLTE 263
Cdd:COG0823 128 RRIVFSSD-------RGGRPDLYVVDL-DGRKRRLTP 156
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
39-150 |
6.31e-19 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 84.34 E-value: 6.31e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 39 YASDPQISPSGDKVLYlrnfkdiMTDRN-LSNIWMVNFDGSASRPITTGNKNDFSPRWSNSGDRFIYKSNVDGSTQLYLY 117
Cdd:COG0823 32 IDTSPAWSPDGRRIAF-------TSDRGgGPQIYVVDADGGEPRRLTFGGGYNASPSWSPDGKRLAFVSRSDGRFDIYVL 104
|
90 100 110
....*....|....*....|....*....|...
gi 2033828802 118 DINTSSTQKLTNmqsSIGNVIWSDDDRYLLFTS 150
Cdd:COG0823 105 DLDGGAPRRLTD---GPGSPSWSPDGRRIVFSS 134
|
|
| FrsA |
COG1073 |
Fermentation-respiration switch esterase FrsA, DUF1100 family [Signal transduction mechanisms]; ... |
421-650 |
1.73e-17 |
|
Fermentation-respiration switch esterase FrsA, DUF1100 family [Signal transduction mechanisms];
Pssm-ID: 440691 [Multi-domain] Cd Length: 253 Bit Score: 82.66 E-value: 1.73e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 421 EEVWYSSSyDGKKIQGWLVYPPNfdPNKKYPLIleIHGGPFTNYGFRFSAEVQLFASAGNLVLYTNPRGS-TSYGKdfan 499
Cdd:COG1073 11 EDVTFKSR-DGIKLAGDLYLPAG--ASKKYPAV--VVAHGNGGVKEQRALYAQRLAELGFNVLAFDYRGYgESEGE---- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 500 liHHNYPSQDYDDLMSGVDHVIERGYVDENNLFVTGGSGGGVLTSWTIGKTDRFKAAVVAKPVINWYSFVLYADNISYFY 579
Cdd:COG1073 82 --PREEGSPERRDARAAVDYLRTLPGVDPERIGLLGISLGGGYALNAAATDPRVKAVILDSPFTSLEDLAAQRAKEARGA 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2033828802 580 KY-WFPGMPWDNLEEYMRR--SPISYVKNVTTPTMLLTGEDDYRTPMAESEQYYAGLKLNKvesMLVRIPGADH 650
Cdd:COG1073 160 YLpGVPYLPNVRLASLLNDefDPLAKIEKISRPLLFIHGEKDEAVPFYMSEDLYEAAAEPK---ELLIVPGAGH 230
|
|
| DLH |
COG0412 |
Dienelactone hydrolase [Secondary metabolites biosynthesis, transport and catabolism]; |
421-651 |
3.09e-17 |
|
Dienelactone hydrolase [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 440181 [Multi-domain] Cd Length: 226 Bit Score: 81.17 E-value: 3.09e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 421 EEVWYSSSyDGKKIQGWLVYPPNfdpNKKYPLILEIHGGPFTNYGFRFSAEVqlFASAGNLVL----YTnPRGSTSYGKD 496
Cdd:COG0412 4 ETVTIPTP-DGVTLPGYLARPAG---GGPRPGVVVLHEIFGLNPHIRDVARR--LAAAGYVVLapdlYG-RGGPGDDPDE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 497 FANLIHHNYPSQDYDDLMSGVDHVIERGYVDENNLFVTGGSGGGVLTSWTIGKTDRFKAAVVakpvinwysfvlyadnis 576
Cdd:COG0412 77 ARALMGALDPELLAADLRAALDWLKAQPEVDAGRVGVVGFCFGGGLALLAAARGPDLAAAVS------------------ 138
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2033828802 577 yFYkywfPGMPWDNLEEYmrrspisyVKNVTTPTMLLTGEDDYRTPMAESEQYYAGLKLNKVESMLVRIPGADHG 651
Cdd:COG0412 139 -FY----GGLPADDLLDL--------AARIKAPVLLLYGEKDPLVPPEQVAALEAALAAAGVDVELHVYPGAGHG 200
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
103-311 |
6.00e-17 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 78.56 E-value: 6.00e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 103 IYKSNVDGSTQLYLYDINTSSTQKLTNMQSSIGNVIWSDDDRYLLFTSfvektdnkliqmpkkpkgakwneppieiddmv 182
Cdd:COG0823 2 AFTLSRDGNSDIYVVDLDGGEPRRLTNSPGIDTSPAWSPDGRRIAFTS-------------------------------- 49
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 183 yrydgggfRRSGSTQIFVLSSEGGTPRQLTELNNNIRSIEWM-NNDKVLFSANlsensdfEPNNSDIYTLDIPTGEIKKL 261
Cdd:COG0823 50 --------DRGGGPQIYVVDADGGEPRRLTFGGGYNASPSWSpDGKRLAFVSR-------SDGRFDIYVLDLDGGAPRRL 114
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2033828802 262 TERFGpdyAPKVSPDKKHIAYLGYDDkflGYQQnsLYVMDADGGDIKLVS 311
Cdd:COG0823 115 TDGPG---SPSWSPDGRRIVFSSDRG---GRPD--LYVVDLDGRKRRLTP 156
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
245-383 |
8.92e-17 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 78.18 E-value: 8.92e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 245 NSDIYTLDIPTGEIKKLTERFGPDYAPKVSPDKKHIAYlgYDDKFLGYQqnsLYVMDADGGDIKLVSNGFDRNiSNINWK 324
Cdd:COG0823 10 NSDIYVVDLDGGEPRRLTNSPGIDTSPAWSPDGRRIAF--TSDRGGGPQ---IYVVDADGGEPRRLTFGGGYN-ASPSWS 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2033828802 325 EDGKGLYFQYDNEGMTKIAYISLSG-KVRDIVDelgglslgrpySGGTYTISDNGRY-AFT 383
Cdd:COG0823 84 PDGKRLAFVSRSDGRFDIYVLDLDGgAPRRLTD-----------GPGSPSWSPDGRRiVFS 133
|
|
| propeller_TolB |
TIGR02800 |
tol-pal system beta propeller repeat protein TolB; Members of this protein family are the TolB ... |
68-385 |
2.73e-15 |
|
tol-pal system beta propeller repeat protein TolB; Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274305 [Multi-domain] Cd Length: 417 Bit Score: 78.47 E-value: 2.73e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 68 SNIWMVNFDGSASRPITTGNKNDFSPRWSNSGDRFIYKSNVDGSTQLYLYDINTSSTQKLTNMQSSIGNVIWSDDdryll 147
Cdd:TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPD----- 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 148 ftsfvektdnkliqmpkkpkgakwneppieiddmvyrydgggfrrsGSTQIFVLSSEGgtprqltelnnnirsiewmnnd 227
Cdd:TIGR02800 245 ----------------------------------------------GSKLAVSLSKDG---------------------- 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 228 kvlfsanlsensdfepnNSDIYTLDIPTGEIKKLTERFGPDYAPKVSPDKKHIAYLgyDDKfLGYQQnsLYVMDADGGDI 307
Cdd:TIGR02800 257 -----------------NPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFT--SDR-GGSPQ--IYMMDADGGEV 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 308 KLVSNGFDRNISNiNWKEDGKGLYFQYDNEGMTKIAYISLSGKVRDIVDElGGLSLGrPysggtyTISDNGR---YAFTY 384
Cdd:TIGR02800 315 RRLTFRGGYNASP-SWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD-TGLDES-P------SFAPNGRmilYATTR 385
|
.
gi 2033828802 385 G 385
Cdd:TIGR02800 386 G 386
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
35-125 |
1.54e-11 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 63.15 E-value: 1.54e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 35 FEIEYASDPQISPSGDKVLYLRNfkdimtDRNLSNIWMVNFDGSASRPITTGnknDFSPRWSNSGDRFIYKSNVDGSTQL 114
Cdd:COG0823 72 FGGGYNASPSWSPDGKRLAFVSR------SDGRFDIYVLDLDGGAPRRLTDG---PGSPSWSPDGRRIVFSSDRGGRPDL 142
|
90
....*....|.
gi 2033828802 115 YLYDINTSSTQ 125
Cdd:COG0823 143 YVVDLDGRKRR 153
|
|
| COG4099 |
COG4099 |
Predicted peptidase [General function prediction only]; |
416-655 |
3.23e-11 |
|
Predicted peptidase [General function prediction only];
Pssm-ID: 443275 [Multi-domain] Cd Length: 235 Bit Score: 63.83 E-value: 3.23e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 416 SLGKVEEVWYSSSYDGKKIQGWLVYPPNFDPNKKYPLILEIHGGpftnyGFR-FSAEVQLFASAGNLVLYTNprgstsyG 494
Cdd:COG4099 15 AQDGFEARTFTDPSDGDTLPYRLYLPKGYDPGKKYPLVLFLHGA-----GERgTDNEKQLTHGAPKFINPEN-------Q 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 495 KDF-ANLIHHNYPSQDY-------DDLMSGVDHVIERGYVDENNLFVTGGSGGGVLTsWTIG--KTDRFKAAVVakpvin 564
Cdd:COG4099 83 AKFpAIVLAPQCPEDDYwsdtkalDAVLALLDDLIAEYRIDPDRIYLTGLSMGGYGT-WDLAarYPDLFAAAVP------ 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 565 wysfvlyadnISyfykywfpGMPwdnleeymrrsPISYVKNV-TTPTMLLTGEDDYRTPMAESEQYYAGLKLNKVESMLV 643
Cdd:COG4099 156 ----------IC--------GGG-----------DPANAANLkKVPVWIFHGAKDDVVPVEESRAMVEALKAAGADVKYT 206
|
250
....*....|..
gi 2033828802 644 RIPGADHGIASR 655
Cdd:COG4099 207 EYPGVGHNSWDP 218
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
31-150 |
2.50e-09 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 60.82 E-value: 2.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 31 PIDIFEIEYASDPQISPSGDKVLYLRNfkdimtdRNlsNIWMVNFDGSASRPITTGNKND--FSPRWSNSGDRFIY-KSN 107
Cdd:COG4946 382 QLTLGDLGRVFNPVWSPDGKKIAFTDN-------RG--RLWVVDLASGKVRKVDTDGYGDgiSDLAWSPDSKWLAYsKPG 452
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 2033828802 108 VDGSTQLYLYDINTSSTQKLTNMQSSIGNVIWSDDDRYLLFTS 150
Cdd:COG4946 453 PNQLSQIFLYDVETGKTVQLTDGRYDDGSPAFSPDGKYLYFLS 495
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
191-338 |
3.25e-09 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 60.44 E-value: 3.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 191 RRSGSTQIFVLSSEGGTPRQLTELNNNIRSIEWMNNDK-VLFSANlseNSDFEPNNSDIYTLDIPTGEIKKLTerFGPDY 269
Cdd:COG4946 80 DYDGNTDVYVMPAEGGEPKRLTYHPANDRVVGWTPDGKsVLFASN---RGSPPSRSNQLYTVPVDGGLPERLP--LPPAG 154
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2033828802 270 APKVSPDKKHIAYL---GYDDKFLGYQ--QNS-LYVMDADGGDIKLVSNgFDRNISNINWkeDGKGLYFQYDNEG 338
Cdd:COG4946 155 DGSFSPDGKKLAYTrigREFRTWKRYRggTAGdIWIYDLGTGEFTRLTD-FGGNDRNPMW--IGDRIYFLSDRDG 226
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
69-446 |
1.17e-08 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 58.51 E-value: 1.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 69 NIWMVNFDGSASRPITTGNKNDFSPRWSNSGDRFIYKSNVDGSTQLYLYDINTSSTQKLTNmQSSIGNVI-WSDDDRYLL 147
Cdd:COG4946 42 DLWTVPADGGRARRLTSHPGYESFPRFSPDGKWIAFTSDYDGNTDVYVMPAEGGEPKRLTY-HPANDRVVgWTPDGKSVL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 148 FTS---FVEKTDNKLIQ------MPKK------------PKGAKwneppieiddMVYRYDGGGFR-----RSGSTQ-IFV 200
Cdd:COG4946 121 FASnrgSPPSRSNQLYTvpvdggLPERlplppagdgsfsPDGKK----------LAYTRIGREFRtwkryRGGTAGdIWI 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 201 LSSEGGTPRQLTELNNNIRSIEWMnNDKV-----------LFSANLSeNSD-----------------------FEpNNS 246
Cdd:COG4946 191 YDLGTGEFTRLTDFGGNDRNPMWI-GDRIyflsdrdgtfnLYSYDPD-GKDlrqlthfkdfdvrfpstdggrivYE-QGG 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 247 DIYTLDIPTGEIKKLT-----------ERF----------------------------------GP-----------DYA 270
Cdd:COG4946 268 DLYLLDLASGEPRKLNitlagdfpqrrPRWvdvsgyltsfalspdgkrvafeargevftvpaekGPtrnltntpgvrERL 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 271 PKVSPDKKHIAYLGYDDkflGYQQnsLYVMDADGGD----IKLVSNGFDRNISninWKEDGKglyfqydnegmtKIAYIS 346
Cdd:COG4946 348 PAWSPDGKSIAYFSDAS---GEYE--LYIAPADGSGepkqLTLGDLGRVFNPV---WSPDGK------------KIAFTD 407
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 347 L----------SGKVRDIVDELGGLslgrpySGGTYTISDNGRY-AFTYGNVYNPADLAVgYNGSKNRLTKLNDDLFQYK 415
Cdd:COG4946 408 NrgrlwvvdlaSGKVRKVDTDGYGD------GISDLAWSPDSKWlAYSKPGPNQLSQIFL-YDVETGKTVQLTDGRYDDG 480
|
490 500 510
....*....|....*....|....*....|....*.
gi 2033828802 416 SL-----GKVeeVWYSSSYDGKKIQGWLVYPPNFDP 446
Cdd:COG4946 481 SPafspdGKY--LYFLSSRDFNPTYGDLDFDLAFPR 514
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
42-248 |
3.74e-08 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 56.97 E-value: 3.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 42 DPQISPSGDKVLYLrnfkdimTDRN-LSNIWMVNFDGS-ASRPITTGNKND-FSPRWSNSGDRFIYksnVDGSTQLYLYD 118
Cdd:COG4946 347 LPAWSPDGKSIAYF-------SDASgEYELYIAPADGSgEPKQLTLGDLGRvFNPVWSPDGKKIAF---TDNRGRLWVVD 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 119 INTSSTQKLT--NMQSSIGNVIWSDDDRYLLFTsfvektdnkliqmpkkpkgakwneppieiddmvyRYDGGGFRrsgst 196
Cdd:COG4946 417 LASGKVRKVDtdGYGDGISDLAWSPDSKWLAYS----------------------------------KPGPNQLS----- 457
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2033828802 197 QIFVLSSEGGTPRQLTELNNNIRSIEWMNNDKVL-FsanLSeNSDFEPNNSDI 248
Cdd:COG4946 458 QIFLYDVETGKTVQLTDGRYDDGSPAFSPDGKYLyF---LS-SRDFNPTYGDL 506
|
|
| Aes |
COG0657 |
Acetyl esterase/lipase [Lipid transport and metabolism]; |
439-651 |
1.27e-07 |
|
Acetyl esterase/lipase [Lipid transport and metabolism];
Pssm-ID: 440422 [Multi-domain] Cd Length: 207 Bit Score: 52.57 E-value: 1.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 439 VYPPNfDPNKKYPLILEIHGGpftnyGFRFsaevqlfasagnlvlyTNPRGSTSYGKDFANLI-------------HHNY 505
Cdd:COG0657 3 VYRPA-GAKGPLPVVVYFHGG-----GWVS----------------GSKDTHDPLARRLAARAgaavvsvdyrlapEHPF 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 506 PSQdYDDLMSGVDHVIERGY---VDENNLFVTGGSGGGVLTSWTI-----GKTDRFKAAVVAKPVINWYSFVLYADnisy 577
Cdd:COG0657 61 PAA-LEDAYAALRWLRANAAelgIDPDRIAVAGDSAGGHLAAALAlrardRGGPRPAAQVLIYPVLDLTASPLRAD---- 135
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2033828802 578 fykywFPGMPwdnleeymrrspisyvknvttPTMLLTGEDDyrTPMAESEQYYAGLKLNKVESMLVRIPGADHG 651
Cdd:COG0657 136 -----LAGLP---------------------PTLIVTGEAD--PLVDESEALAAALRAAGVPVELHVYPGGGHG 181
|
|
| LpqC |
COG3509 |
Acetyl xylan esterase AxeA and related esterases, LpqC family [Carbohydrate transport and ... |
438-559 |
1.47e-06 |
|
Acetyl xylan esterase AxeA and related esterases, LpqC family [Carbohydrate transport and metabolism];
Pssm-ID: 442732 [Multi-domain] Cd Length: 284 Bit Score: 50.39 E-value: 1.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 438 LVY-PPNFDPNKKYPLILEIHGGP------FTNYGFRfsaevQLFASAGNLVLYtnPRGSTSYGK---DFANLIHHNYPS 507
Cdd:COG3509 40 RLYvPAGYDGGAPLPLVVALHGCGgsaadfAAGTGLN-----ALADREGFIVVY--PEGTGRAPGrcwNWFDGRDQRRGR 112
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 2033828802 508 QDYDDLMSGVDHVIERGYVDENNLFVTGGSGGGVLTsWTIGKT--DRFKA-AVVA 559
Cdd:COG3509 113 DDVAFIAALVDDLAARYGIDPKRVYVTGLSAGGAMA-YRLACEypDVFAAvAPVA 166
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
38-283 |
1.70e-06 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 51.58 E-value: 1.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 38 EYASDPQISPSGDKVLY-LRNfkDImtdrnlsnIWMVNFDGSAsRPIT-TGNKNDFSPRWSNSGDRFIYKSNVDGSTQLY 115
Cdd:COG4946 302 GYLTSFALSPDGKRVAFeARG--EV--------FTVPAEKGPT-RNLTnTPGVRERLPAWSPDGKSIAYFSDASGEYELY 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 116 LYDINTSSTQK-LTNMQSS-IGNVIWSDDDRYLLFTSfvekTDNKLiqmpkkpkgakwneppieiddmvyrydgggfrrs 193
Cdd:COG4946 371 IAPADGSGEPKqLTLGDLGrVFNPVWSPDGKKIAFTD----NRGRL---------------------------------- 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 194 gstqiFVLSSEGGTPRQLT--ELNNNIRSIEWMNNDK-VLFSANLSEnsdfepNNSDIYTLDIPTGEIKKLTERFGPDYA 270
Cdd:COG4946 413 -----WVVDLASGKVRKVDtdGYGDGISDLAWSPDSKwLAYSKPGPN------QLSQIFLYDVETGKTVQLTDGRYDDGS 481
|
250
....*....|...
gi 2033828802 271 PKVSPDKKHIAYL 283
Cdd:COG4946 482 PAFSPDGKYLYFL 494
|
|
| AXE1 |
pfam05448 |
Acetyl xylan esterase (AXE1); This family consists of several bacterial acetyl xylan esterase ... |
419-622 |
2.97e-06 |
|
Acetyl xylan esterase (AXE1); This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan.
Pssm-ID: 398876 [Multi-domain] Cd Length: 316 Bit Score: 49.70 E-value: 2.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 419 KVEEVWYSSsYDGKKIQGWLVYPPnfDPNKKYPLILEIHGgpftnYGFR--FSAEVQLFASAGNLVLYTNPRGSTSYGKD 496
Cdd:pfam05448 54 ECYDLTFEG-FGGARIYAWYVVPK--ESEEKHPAVVHFHG-----YNGRrgDWHDMLHWAAHGYAVFVMDVRGQGGLSED 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 497 FANLIHHN----------------YPSQDYDDLMSGVDHVIERGYVDENNLFVTGGSGGGVLTSWTIGKTDRFKAAVVAK 560
Cdd:pfam05448 126 DPRGPKGNtykghitrglldretyYYRRVFLDAVRAVEIVMSFPEVDEERIVVTGGSQGGALALAAAALSPRIKAVVADY 205
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2033828802 561 PVINWYSFVLYADNisyfykywfpGMPWDNLEEYMRRSP-----------ISY--VKN----VTTPTMLLTGEDDYRTP 622
Cdd:pfam05448 206 PFLSDFRRAWEMDL----------EHPYDELNRYFKRDPhhereeeafrtLSYfdIKNlahrVKGPVLMAIGLIDDVCP 274
|
|
| tolB |
PRK01029 |
Tol-Pal system protein TolB; |
14-150 |
3.50e-06 |
|
Tol-Pal system protein TolB;
Pssm-ID: 234889 [Multi-domain] Cd Length: 428 Bit Score: 50.15 E-value: 3.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 14 FVIFLTSAQGQISKtfdPIDIFEIEYA--SDPQISPSGDKVLYLRNfKDimtdrNLSNIWMVNFD--GSASRPITTGNKN 89
Cdd:PRK01029 258 FIQSFSLETGAIGK---PRRLLNEAFGtqGNPSFSPDGTRLVFVSN-KD-----GRPRIYIMQIDpeGQSPRLLTKKYRN 328
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2033828802 90 DFSPRWSNSGDRFIYKSNVDGSTQLYLYDINTSSTQKLTNMQSSIGNVIWSDDDRYLLFTS 150
Cdd:PRK01029 329 SSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSA 389
|
|
| MenH |
COG0596 |
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, ... |
451-667 |
5.64e-05 |
|
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold [Coenzyme transport and metabolism, General function prediction only]; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold is part of the Pathway/BioSystem: Menaquinone biosynthesis
Pssm-ID: 440361 [Multi-domain] Cd Length: 221 Bit Score: 44.99 E-value: 5.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 451 PLILeIHGGPFTNYGFRFSAEvqLFASAGNLVLYTNP-RGSTSYGKDFANLIHHnypSQDYDDLMS--GVDHVIergyvd 527
Cdd:COG0596 25 PVVL-LHGLPGSSYEWRPLIP--ALAAGYRVIAPDLRgHGRSDKPAGGYTLDDL---ADDLAALLDalGLERVV------ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 528 ennlFVtGGSGGGVLTS-WTIGKTDRFKAAVvakpvinwysfvLYADNISYFYKYWFPGMPWDN-----LEEYMRRSPIS 601
Cdd:COG0596 93 ----LV-GHSMGGMVALeLAARHPERVAGLV------------LVDEVLAALAEPLRRPGLAPEalaalLRALARTDLRE 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2033828802 602 YVKNVTTPTMLLTGEDDYRTPMAESEQYYAGLKlnkvESMLVRIPGADHGIA-SRPSNLIAKVNAIL 667
Cdd:COG0596 156 RLARITVPTLVIWGEKDPIVPPALARRLAELLP----NAELVVLPGAGHFPPlEQPEAFAAALRDFL 218
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
40-305 |
1.27e-04 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 45.41 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 40 ASDPQISPSGDKVLYLRNfkdimTDRNLSNIWMVNFDGSASRPITTGNKNDFSPRWSNSGdRFIY-KSN-----VDGSTQ 113
Cdd:COG4946 434 ISDLAWSPDSKWLAYSKP-----GPNQLSQIFLYDVETGKTVQLTDGRYDDGSPAFSPDG-KYLYfLSSrdfnpTYGDLD 507
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 114 LYLYDINTSS------TQKLTN--MQSSIGNVIWSDDDryllftsfvEKTDNKliqmpKKPKGAKwNEPPIEIDdmvyrY 185
Cdd:COG4946 508 FDLAFPRTTRiyavplRKDAPSpfAPESDEEAAKKEED---------EKKKKK-----KKDDKKK-KPKPVKID-----F 567
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 186 DggGFRRsgstQIFVLSSEGGtprqltelnnNIRSIEwMNNDKVLFsanLSENSDFEPnNSDIYTLDIPTGEIKKLTERF 265
Cdd:COG4946 568 D--GIED----RIVALPVPAG----------NYSDLA-AGKGGVLY---LLEPVEGAP-GGTLYRYDLEKRKTETLADGV 626
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 2033828802 266 GpDYApkVSPDKKHIAYLgyddkflgyQQNSLYVMDADGG 305
Cdd:COG4946 627 S-SYE--LSADGKKLLVR---------SGGRLRVVDADAK 654
|
|
| PldB |
COG2267 |
Lysophospholipase, alpha-beta hydrolase superfamily [Lipid transport and metabolism]; |
428-652 |
1.72e-04 |
|
Lysophospholipase, alpha-beta hydrolase superfamily [Lipid transport and metabolism];
Pssm-ID: 441868 [Multi-domain] Cd Length: 221 Bit Score: 43.45 E-value: 1.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 428 SYDGKKIQGWLVYPpnfDPNKKYPLILeIHGgpFTNYGFRFSAEVQLFASAG-NLVLYTNP-----RGSTSYGKDFANLI 501
Cdd:COG2267 10 TRDGLRLRGRRWRP---AGSPRGTVVL-VHG--LGEHSGRYAELAEALAAAGyAVLAFDLRghgrsDGPRGHVDSFDDYV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 502 hhnypsqdyDDLMSGVDHVIERGYVDennLFVTGGS-GGGVLTSWTIGKTDRFKAAVVAKPVINWYSFVLYAdnisyfYK 580
Cdd:COG2267 84 ---------DDLRAALDALRARPGLP---VVLLGHSmGGLIALLYAARYPDRVAGLVLLAPAYRADPLLGPS------AR 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2033828802 581 YWFPGMPWDNLeeymrrspisyvKNVTTPTMLLTGEDDYRTPMAESEQYYAGLKLNKvesMLVRIPGADHGI 652
Cdd:COG2267 146 WLRALRLAEAL------------ARIDVPVLVLHGGADRVVPPEAARRLAARLSPDV---ELVLLPGARHEL 202
|
|
| tolB |
PRK01029 |
Tol-Pal system protein TolB; |
16-359 |
2.15e-04 |
|
Tol-Pal system protein TolB;
Pssm-ID: 234889 [Multi-domain] Cd Length: 428 Bit Score: 44.37 E-value: 2.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 16 IFLTSAQGQISKTFDPIDIFE--------IEYASD---------PQISpSGdKVLYLRNFKDIMTDRNLSNIWMVNFDGS 78
Cdd:PRK01029 98 VFSLKKEGKNPQKLFSLELSGdlskdrqkIHEAADtihyaltgvPGIS-SG-KIIFSLSTTNSDTELKQGELWSVDYDGQ 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 79 ASRPITTGNKNDFSPRWSN--SGDRFIYKSNVDGSTQLYLYDINTSSTQKLTNMQssiGNVI---WSDDDRYLLFTSFVE 153
Cdd:PRK01029 176 NLRPLTQEHSLSITPTWMHigSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ---GNQLmptFSPRKKLLAFISDRY 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 154 KTDNKLIQMPKKPKGAKWNepPIEIDDMVYRYDGG-GFRRSGSTQIFVlSSEGGTPRqltelnnnirsiewmnndkvlfs 232
Cdd:PRK01029 253 GNPDLFIQSFSLETGAIGK--PRRLLNEAFGTQGNpSFSPDGTRLVFV-SNKDGRPR----------------------- 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 233 anlsensdfepnnsdIYTLDIPTgEIKK---LTERFGPDYAPKVSPDKKHIAYLGYDDkflGYQQNSLYVMdADGGDIKL 309
Cdd:PRK01029 307 ---------------IYIMQIDP-EGQSprlLTKKYRNSSCPAWSPDGKKIAFCSVIK---GVRQICVYDL-ATGRDYQL 366
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 2033828802 310 VSNgfDRNISNINWKEDGKGLYFQYDNEGMTKIAYISL-SGKVRDIVDELG 359
Cdd:PRK01029 367 TTS--PENKESPSWAIDSLHLVYSAGNSNESELYLISLiTKKTRKIVIGSG 415
|
|
| PD40 |
pfam07676 |
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. ... |
81-115 |
2.83e-04 |
|
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. This repeat corresponds to the RIVW repeat identified in cell surface proteins [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16].
Pssm-ID: 429587 [Multi-domain] Cd Length: 37 Bit Score: 38.65 E-value: 2.83e-04
10 20 30
....*....|....*....|....*....|....*
gi 2033828802 81 RPITTGNKNDFSPRWSNSGDRFIYKSNVDGSTQLY 115
Cdd:pfam07676 2 GRLTNTPGNETAPSWSPDGKRLAFSSDRDGKPDIY 36
|
|
| PreP |
COG1505 |
Prolyl endopeptidase PreP, S9A serine peptidase family [Amino acid transport and metabolism]; |
420-562 |
2.36e-03 |
|
Prolyl endopeptidase PreP, S9A serine peptidase family [Amino acid transport and metabolism];
Pssm-ID: 441114 [Multi-domain] Cd Length: 673 Bit Score: 41.26 E-value: 2.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 420 VEEVWYSSSyDGKKIQGWLVYPPNFDPNKKYPLILEIHGGpftnygF------RFSAEVQLFASAGNLVLYTNPRGSTSY 493
Cdd:COG1505 414 VEQVFATSK-DGTRVPYFIVHKKGLKLDGPNPTLLYGYGG------FnisltpSYSASGLAWLERGGVYAVANLRGGGEY 486
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2033828802 494 GKDF---ANLIH-HNYpsqdYDDLMSGVDHVIERGYVDENNLFVTGGSGGGVLTSWTIgkT---DRFKAAVVAKPV 562
Cdd:COG1505 487 GPAWhqaGLKENkQNV----FDDFIAAAEDLIARGYTSPERLAIQGGSNGGLLVGAAL--TqrpELFGAVVCAVPL 556
|
|
| SGL |
pfam08450 |
SMP-30/Gluconolactonase/LRE-like region; This family describes a region that is found in ... |
244-332 |
2.89e-03 |
|
SMP-30/Gluconolactonase/LRE-like region; This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE.
Pssm-ID: 462480 [Multi-domain] Cd Length: 246 Bit Score: 39.94 E-value: 2.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033828802 244 NNSDIYTLDIPTGEIKKLTERFGPDYAP------KVSPDKKHIAYLGYDDKFLGYQQNSLYVMDADGGDIKLVsNGFDrn 317
Cdd:pfam08450 58 LKDGVALLDLATGELTPLADPEDDDWPLnrfndgKVDPDGRFWFGTMGDDEAPGGDPGALYRLDPDGKLTRVL-DGLT-- 134
|
90
....*....|....*.
gi 2033828802 318 ISN-INWKEDGKGLYF 332
Cdd:pfam08450 135 ISNgLAWSPDGRTLYF 150
|
|
| Fes |
COG2382 |
Enterochelin esterase or related enzyme [Inorganic ion transport and metabolism]; |
418-462 |
3.52e-03 |
|
Enterochelin esterase or related enzyme [Inorganic ion transport and metabolism];
Pssm-ID: 441948 [Multi-domain] Cd Length: 314 Bit Score: 40.22 E-value: 3.52e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 2033828802 418 GKVEEVWYSSSYDGKKIQGWLVYPPNFD-PNKKYPLILEIHGGPFT 462
Cdd:COG2382 79 GTVETVTYPSKALGRTRRVWVYLPPGYDnPGKKYPVLYLLDGGGGD 124
|
|
| |
