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Conserved domains on  [gi|2033828801|dbj|GIR73119|]
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MAG: hypothetical protein CM15mP75_6310 [Flammeovirgaceae bacterium]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YbjQ_1 super family cl00426
Putative heavy-metal-binding; From comparative structural analysis, this family is likely to ...
 2-46 3.47e-17

Putative heavy-metal-binding; From comparative structural analysis, this family is likely to be a heavy-metal binding domain. The domain oligomerises as a pentamer. The domain is about 100 amino acids long and is found in prokaryotes.


The actual alignment was detected with superfamily member pfam01906:

Pssm-ID: 444900  Cd Length: 99  Bit Score: 69.03  E-value: 3.47e-17
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 2033828801  2 RTRNVGYDIFAGLKTLIGGEVESYTKLQADAREQALQRMISDAEK 46
Cdd:pfam01906 24 RSRNVGRDIFAGLRDIVGGESGAYTEMLEEAREEALERMVEEARE 68
 
Name Accession Description Interval E-value
YbjQ_1 pfam01906
Putative heavy-metal-binding; From comparative structural analysis, this family is likely to ...
 2-46 3.47e-17

Putative heavy-metal-binding; From comparative structural analysis, this family is likely to be a heavy-metal binding domain. The domain oligomerises as a pentamer. The domain is about 100 amino acids long and is found in prokaryotes.


Pssm-ID: 426504  Cd Length: 99  Bit Score: 69.03  E-value: 3.47e-17
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 2033828801  2 RTRNVGYDIFAGLKTLIGGEVESYTKLQADAREQALQRMISDAEK 46
Cdd:pfam01906 24 RSRNVGRDIFAGLRDIVGGESGAYTEMLEEAREEALERMVEEARE 68
YbjQ COG0393
Uncharacterized pentameric protein YbjQ, UPF0145 family [Function unknown];
2-46 9.69e-17

Uncharacterized pentameric protein YbjQ, UPF0145 family [Function unknown];


Pssm-ID: 440162  Cd Length: 103  Bit Score: 67.82  E-value: 9.69e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2033828801   2 RTRNVGYDIFAGLKTLIGGEVESYTKLQADAREQALQRMISDAEK 46
Cdd:COG0393    24 RSRNIGKDFFAGLRDLVGGESGAYEELLEEAREEALERMKEEARA 68
PRK00967 PRK00967
hypothetical protein; Provisional
 2-46 5.77e-15

hypothetical protein; Provisional


Pssm-ID: 179188  Cd Length: 105  Bit Score: 63.49  E-value: 5.77e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2033828801   2 RTRNVGYDIFAGLKTLIGGEVESYTKLQADAREQALQRMISDAEK 46
Cdd:PRK00967   27 QSKNIVRDIGAGLKNVVGGEIKGYTEMLTEARDIAIDRMKEEAKQ 71
 
Name Accession Description Interval E-value
YbjQ_1 pfam01906
Putative heavy-metal-binding; From comparative structural analysis, this family is likely to ...
 2-46 3.47e-17

Putative heavy-metal-binding; From comparative structural analysis, this family is likely to be a heavy-metal binding domain. The domain oligomerises as a pentamer. The domain is about 100 amino acids long and is found in prokaryotes.


Pssm-ID: 426504  Cd Length: 99  Bit Score: 69.03  E-value: 3.47e-17
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 2033828801  2 RTRNVGYDIFAGLKTLIGGEVESYTKLQADAREQALQRMISDAEK 46
Cdd:pfam01906 24 RSRNVGRDIFAGLRDIVGGESGAYTEMLEEAREEALERMVEEARE 68
YbjQ COG0393
Uncharacterized pentameric protein YbjQ, UPF0145 family [Function unknown];
2-46 9.69e-17

Uncharacterized pentameric protein YbjQ, UPF0145 family [Function unknown];


Pssm-ID: 440162  Cd Length: 103  Bit Score: 67.82  E-value: 9.69e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2033828801   2 RTRNVGYDIFAGLKTLIGGEVESYTKLQADAREQALQRMISDAEK 46
Cdd:COG0393    24 RSRNIGKDFFAGLRDLVGGESGAYEELLEEAREEALERMKEEARA 68
PRK00967 PRK00967
hypothetical protein; Provisional
 2-46 5.77e-15

hypothetical protein; Provisional


Pssm-ID: 179188  Cd Length: 105  Bit Score: 63.49  E-value: 5.77e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2033828801   2 RTRNVGYDIFAGLKTLIGGEVESYTKLQADAREQALQRMISDAEK 46
Cdd:PRK00967   27 QSKNIVRDIGAGLKNVVGGEIKGYTEMLTEARDIAIDRMKEEAKQ 71
PRK01217 PRK01217
hypothetical protein; Provisional
 2-45 1.85e-12

hypothetical protein; Provisional


Pssm-ID: 179252  Cd Length: 114  Bit Score: 57.45  E-value: 1.85e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 2033828801   2 RTRNVGYDIFAGLKTLIGGEVESYTKLQADAREQALQRMISDAE 45
Cdd:PRK01217   34 RSRGLGGNIVAGLRSLAGGEIKEYVEMAEQARNQALERMIDHAK 77
PRK03732 PRK03732
hypothetical protein; Provisional
 1-46 1.51e-09

hypothetical protein; Provisional


Pssm-ID: 167593  Cd Length: 114  Bit Score: 49.93  E-value: 1.51e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2033828801   1 MRTRNVGYDIFAGLKTLIGGEVESYTKLQADAREQALQRMISDAEK 46
Cdd:PRK03732   33 VKATHLGRDIMALLRNIKGGEVKEYTQMMAEAREEALRRMALHAKE 78
PRK02877 PRK02877
hypothetical protein; Provisional
 5-45 7.01e-03

hypothetical protein; Provisional


Pssm-ID: 179490  Cd Length: 106  Bit Score: 32.44  E-value: 7.01e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2033828801   5 NVGYDIFAGLKTLIGGEVESYTKLQADAREQALQRMISDAE 45
Cdd:PRK02877   30 NIFRDFFAGIRDIVGGRSGAYEKELRKAREIAFEELGEQAR 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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