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Conserved domains on  [gi|641263503|dbj|GAK24938|]
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flagellar motor switch protein FliN [Vibrio sp. JCM 19052]

Protein Classification

flagellar motor switch protein FliN( domain architecture ID 11483490)

flagellar motor switch protein FliN is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
fliN PRK08983
flagellar motor switch protein FliN;
4-136 3.02e-75

flagellar motor switch protein FliN;


:

Pssm-ID: 236360 [Multi-domain]  Cd Length: 127  Bit Score: 219.62  E-value: 3.02e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 641263503   4 SDDQKLADEWAAALGEDPsapsidVDEILAAPLEELKDTSAPITEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQ 83
Cdd:PRK08983   1 SSDEDTADDWAAAMAEQA------LEEALAAELDELVDDSAPITEDEARKLDTILDIPVTISMEVGRSFISIRNLLQLNQ 74

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 641263503  84 GSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLR 136
Cdd:PRK08983  75 GSVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLK 127
 
Name Accession Description Interval E-value
fliN PRK08983
flagellar motor switch protein FliN;
4-136 3.02e-75

flagellar motor switch protein FliN;


Pssm-ID: 236360 [Multi-domain]  Cd Length: 127  Bit Score: 219.62  E-value: 3.02e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 641263503   4 SDDQKLADEWAAALGEDPsapsidVDEILAAPLEELKDTSAPITEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQ 83
Cdd:PRK08983   1 SSDEDTADDWAAAMAEQA------LEEALAAELDELVDDSAPITEDEARKLDTILDIPVTISMEVGRSFISIRNLLQLNQ 74

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 641263503  84 GSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLR 136
Cdd:PRK08983  75 GSVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLK 127
fliN TIGR02480
flagellar motor switch protein FliN; Proteins that consist largely of the domain described by ...
 53-128 6.66e-33

flagellar motor switch protein FliN; Proteins that consist largely of the domain described by this model for this protein family can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131533 [Multi-domain]  Cd Length: 77  Bit Score: 110.76  E-value: 6.66e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 641263503   53 KLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQ 128
Cdd:TIGR02480   1 NIDLILDIPVELTVELGRTRITLGDLLKLGEGSVIELDKLAGEPLDILVNGRLIARGEVVVVEDKFGIRITEIVDS 76
FliN COG1886
Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular ...
 15-127 2.23e-32

Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441490 [Multi-domain]  Cd Length: 172  Bit Score: 112.41  E-value: 2.23e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 641263503  15 AALGEDPSAPSIDVDEILAAPLEELKDTSAPitEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRLAG 94
Cdd:COG1886   62 LDLLLEVGGLLLLGSDEEPAEFEPLEDAPEA--EEEPENLDLLLDVPVEVTVELGRTRLTLRELLKLGPGSVIELDRLAG 139

                         90       100       110
                 ....*....|....*....|....*....|...
gi 641263503  95 ESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVIS 127
Cdd:COG1886  140 EPVDILVNGRLIARGEVVVVDDRFGVRITEIVS 172
FliMN_C pfam01052
Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal ...
 62-127 3.04e-21

Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.


Pssm-ID: 460043 [Multi-domain]  Cd Length: 66  Bit Score: 80.46  E-value: 3.04e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 641263503   62 VTISMEVGRSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVIS 127
Cdd:pfam01052   1 VELSAELGRTTLTLRELLNLKVGDVIPLDKPADEPVDVLVNGKPKFRGELGVVGGNLAVRITEIID 66
 
Name Accession Description Interval E-value
fliN PRK08983
flagellar motor switch protein FliN;
4-136 3.02e-75

flagellar motor switch protein FliN;


Pssm-ID: 236360 [Multi-domain]  Cd Length: 127  Bit Score: 219.62  E-value: 3.02e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 641263503   4 SDDQKLADEWAAALGEDPsapsidVDEILAAPLEELKDTSAPITEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQ 83
Cdd:PRK08983   1 SSDEDTADDWAAAMAEQA------LEEALAAELDELVDDSAPITEDEARKLDTILDIPVTISMEVGRSFISIRNLLQLNQ 74

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 641263503  84 GSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLR 136
Cdd:PRK08983  75 GSVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLK 127
fliN PRK05698
flagellar motor switch protein FliN;
1-136 5.11e-61

flagellar motor switch protein FliN;


Pssm-ID: 168189 [Multi-domain]  Cd Length: 155  Bit Score: 184.62  E-value: 5.11e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 641263503   1 MEPSDDQKLADEWAAALGEDPSAPSIDVDEILAA-----------PLEELKDTSAP--ITEDERRKLDTIMDIPVTISME 67
Cdd:PRK05698   7 ITSPEDQALADEWAAALEEAGDAGQDDIDALLGAdagaepsgpraPMEEFGSSPKPnePVSLEGPNLDVILDIPVSISME 86

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 641263503  68 VGRSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLR 136
Cdd:PRK05698  87 VGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIKKLR 155
PRK08119 PRK08119
flagellar motor switch protein; Validated
 15-136 2.46e-37

flagellar motor switch protein; Validated


Pssm-ID: 236154 [Multi-domain]  Cd Length: 382  Bit Score: 130.37  E-value: 2.46e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 641263503  15 AALGEDPSAPSIDVDEILAAPLEElkdtsAPITEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRLAG 94
Cdd:PRK08119 266 QRQEPEKEAQPVNVQPAQFQSFDP-----PPLATTEPRNLDLILDVPLQVTVELGRTKKSIKDILELGTGSIIELDKLAG 340

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 641263503  95 ESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLR 136
Cdd:PRK08119 341 EPVDILVNGKLIAKGEVVVIDENFGVRITDIVSQSERIKSLK 382
fliN PRK07963
flagellar motor switch protein FliN; Validated
 3-135 8.69e-36

flagellar motor switch protein FliN; Validated


Pssm-ID: 181183 [Multi-domain]  Cd Length: 137  Bit Score: 119.89  E-value: 8.69e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 641263503   3 PSDDQKLA--DEWAAALGEDPSAPSIDVDEILAAPLEElKDTSAPITEderrkLDTIMDIPVTISMEVGRSQISIRNLLQ 80
Cdd:PRK07963   7 PSDDNNGAmdDLWAEALNEQKATSSKSAADAVFQQLGG-GDVSGTLQD-----IDLIMDIPVKLTVELGRTRMTIKELLR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 641263503  81 LNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKL 135
Cdd:PRK07963  81 LTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
fliN TIGR02480
flagellar motor switch protein FliN; Proteins that consist largely of the domain described by ...
 53-128 6.66e-33

flagellar motor switch protein FliN; Proteins that consist largely of the domain described by this model for this protein family can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131533 [Multi-domain]  Cd Length: 77  Bit Score: 110.76  E-value: 6.66e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 641263503   53 KLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQ 128
Cdd:TIGR02480   1 NIDLILDIPVELTVELGRTRITLGDLLKLGEGSVIELDKLAGEPLDILVNGRLIARGEVVVVEDKFGIRITEIVDS 76
FliN COG1886
Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular ...
 15-127 2.23e-32

Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441490 [Multi-domain]  Cd Length: 172  Bit Score: 112.41  E-value: 2.23e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 641263503  15 AALGEDPSAPSIDVDEILAAPLEELKDTSAPitEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRLAG 94
Cdd:COG1886   62 LDLLLEVGGLLLLGSDEEPAEFEPLEDAPEA--EEEPENLDLLLDVPVEVTVELGRTRLTLRELLKLGPGSVIELDRLAG 139

                         90       100       110
                 ....*....|....*....|....*....|...
gi 641263503  95 ESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVIS 127
Cdd:COG1886  140 EPVDILVNGRLIARGEVVVVDDRFGVRITEIVS 172
PRK08916 PRK08916
flagellar motor switch protein FliN;
29-126 2.02e-24

flagellar motor switch protein FliN;


Pssm-ID: 236350 [Multi-domain]  Cd Length: 116  Bit Score: 90.20  E-value: 2.02e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 641263503  29 DEILAAPLEELKDTSAPITEDERRK-----------LDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRLAGESL 97
Cdd:PRK08916   3 DNDLQVPLPDLNGADAPPEDDVGYNeeeqadrtaadLEAVFDVPVQVSAVLGRSKMDVGQLLKLGPGSVLELDRKVGEAI 82

                         90       100
                 ....*....|....*....|....*....
gi 641263503  98 DVLVNGTLIAHGEVVVVNDKFGIRLTDVI 126
Cdd:PRK08916  83 DIYVNNRLVARGEVVLVEDRLGVTMTEII 111
FliMN_C pfam01052
Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal ...
 62-127 3.04e-21

Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.


Pssm-ID: 460043 [Multi-domain]  Cd Length: 66  Bit Score: 80.46  E-value: 3.04e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 641263503   62 VTISMEVGRSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVIS 127
Cdd:pfam01052   1 VELSAELGRTTLTLRELLNLKVGDVIPLDKPADEPVDVLVNGKPKFRGELGVVGGNLAVRITEIID 66
PRK08432 PRK08432
flagellar motor switch protein FliY; Validated
 37-136 5.87e-17

flagellar motor switch protein FliY; Validated


Pssm-ID: 236264 [Multi-domain]  Cd Length: 283  Bit Score: 74.66  E-value: 5.87e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 641263503  37 EELKDTSAPITEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVND 116
Cdd:PRK08432 183 EEIKTHKASLSNEEIKNINMILDVKLPVRVRIGQKKMLLKDVLSMDIGSVVELNQLANDPLEILVDDKVIAKGEVVIVDG 262

                         90       100
                 ....*....|....*....|
gi 641263503 117 KFGIRLTDVISQTERIKKLR 136
Cdd:PRK08432 263 NFGIQITEIGTKKERLEQLK 282
PRK08433 PRK08433
flagellar motor switch protein FliN;
55-126 7.17e-14

flagellar motor switch protein FliN;


Pssm-ID: 181423 [Multi-domain]  Cd Length: 111  Bit Score: 63.23  E-value: 7.17e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 641263503  55 DTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVI 126
Cdd:PRK08433  27 ENLLDIEVDFSAELGTTQISLLEILKFEKGSVIDLEKPAGESVELYINGRIIGKGEVMVYEKNLAIRINEIL 98
PRK06782 PRK06782
flagellar motor switch protein; Reviewed
 18-126 1.35e-13

flagellar motor switch protein; Reviewed


Pssm-ID: 235861 [Multi-domain]  Cd Length: 528  Bit Score: 66.01  E-value: 1.35e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 641263503  18 GEDPSAPSIDVDEIlaAPLEELKDTSAPITEDERRKLDT-------IMDIPVTISMEVGRSQISIRNLLQLNQGSVVELD 90
Cdd:PRK06782 415 PMVKEEEEIATEEI--EPEKVVEPVVQPIEFKEVKQMEPvymdtsiLQDVPMNVKVVFGSTKKTIQDILSLQENEVVVLD 492

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 641263503  91 RLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVI 126
Cdd:PRK06782 493 EDIDEPIRIYVNGVLVAYGELVNVDGFFGVKVTKSL 528
FliM COG1868
Flagellar motor switch protein FliM [Cell motility];
46-130 3.22e-13

Flagellar motor switch protein FliM [Cell motility];


Pssm-ID: 441473 [Multi-domain]  Cd Length: 326  Bit Score: 64.80  E-value: 3.22e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 641263503  46 ITEDERRKL-DTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTD 124
Cdd:COG1868  240 RDERWRERLrEELEEAEVELSAELGETEITLRELLNLKVGDVIPLDKKVDDPLTVYVGGVPKFEGKPGVSNGRLAVKITE 319


                 ....*.
gi 641263503 125 VISQTE 130
Cdd:COG1868  320 IIEEEE 325
SpaO_YscQ TIGR02551
type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type ...
 13-123 5.73e-13

type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type III secretion operons. The gene (YscQ) in Yersinia is essential for YOPs secretion, while SpaO in Shigella is involved in the Surface Presentation of Antigens apparatus found on the virulence plasmid, and HrcQ is involved in the Harpin secretory system in organisms like Pseudomonas syringae. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274196 [Multi-domain]  Cd Length: 298  Bit Score: 63.97  E-value: 5.73e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 641263503   13 WAAALGEDPSAPSIDVDEILAAPLEELKDTSAPITEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRL 92
Cdd:TIGR02551 186 WARVLLADDRLELIDGITADNLDLSDLTDTESPDEPAAPTPEVDLDQLPVTLEFELGRLTLTLAELAALQPGSVLELNVP 265

                          90       100       110
                  ....*....|....*....|....*....|.
gi 641263503   93 AGESLDVLVNGTLIAHGEVVVVNDKFGIRLT 123
Cdd:TIGR02551 266 VDGPVRLRANGRLLGRGELVDVGGRLGVRIL 296
PRK06933 PRK06933
YscQ/HrcQ family type III secretion apparatus protein;
59-130 1.66e-09

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 235891 [Multi-domain]  Cd Length: 308  Bit Score: 54.36  E-value: 1.66e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 641263503  59 DIPVTISMEVGRSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTE 130
Cdd:PRK06933 236 QLPVQVSFEVGRQTLDLHTLTSLQPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRVERLFGVTQ 307
fliM PRK06666
flagellar motor switch protein FliM; Validated
 57-134 2.89e-07

flagellar motor switch protein FliM; Validated


Pssm-ID: 235849 [Multi-domain]  Cd Length: 337  Bit Score: 47.91  E-value: 2.89e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 641263503  57 IMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134
Cdd:PRK06666 255 VQQAEVELVAELGEIKLTLSEILNLKVGDVIPLEKPADDPLIVYVDGKPKFLCQYGKSNGRKALQIEELIERELNEKN 332
PRK08158 PRK08158
YscQ/HrcQ family type III secretion apparatus protein;
47-133 2.22e-06

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 181259 [Multi-domain]  Cd Length: 303  Bit Score: 45.24  E-value: 2.22e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 641263503  47 TEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVI 126
Cdd:PRK08158 217 TTETAETLPGLNQLPVKLEFVLYRKNVTLAELEELCQQQLLSLPTNAELNVEIRANGALLGNGELVQMDDTLGVEIHEWL 296


                 ....*..
gi 641263503 127 SQTERIK 133
Cdd:PRK08158 297 SGSGNVE 303
PRK06788 PRK06788
flagellar motor switch protein; Validated
 29-134 3.56e-06

flagellar motor switch protein; Validated


Pssm-ID: 180693 [Multi-domain]  Cd Length: 119  Bit Score: 43.33  E-value: 3.56e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 641263503  29 DEILAAPLEELKDTSAPITEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAH 108
Cdd:PRK06788   3 HEVSPVSLMELEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVGI 82

                         90       100
                 ....*....|....*....|....*.
gi 641263503 109 GEVVVVNDKFGIrltdVISQTERIKK 134
Cdd:PRK06788  83 GEAIVMDEKFGI----IISEIEADKK 104
PRK08035 PRK08035
YscQ/HrcQ family type III secretion apparatus protein;
28-123 5.49e-06

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 181204 [Multi-domain]  Cd Length: 323  Bit Score: 44.04  E-value: 5.49e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 641263503  28 VDEILAApLEELKDTSAPITEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELD-RLAGEsLDVLVNGTLI 106
Cdd:PRK08035 220 IDELNQD-IDTLLASGSPMSKSPGTSSVELEQLPQQVVMEIGRLSLPIGQLRQLAVGDVLPVGgCFYPE-VTIRLNGRII 297

                         90
                 ....*....|....*..
gi 641263503 107 AHGEVVVVNDKFGIRLT 123
Cdd:PRK08035 298 GQGELLACDNELMVRIT 314
PRK05933 PRK05933
type III secretion system protein; Validated
 38-125 9.05e-06

type III secretion system protein; Validated


Pssm-ID: 180315 [Multi-domain]  Cd Length: 372  Bit Score: 43.68  E-value: 9.05e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 641263503  38 ELKDTSAPITEDERRKLDTIMDIPVT-------ISMEVGRSQISIRNLLQLNQGSVVELDRL-AGESLDVLVNGTLIAHG 109
Cdd:PRK05933 277 EFKITSYPNLQPEDPPEEPSEGGPAAplpgatkLVAEVARYSLSVGEFLKLGPGSILQFDGVhPTLGVDIILNGAKVGRG 356

                         90
                 ....*....|....*.
gi 641263503 110 EVVVVNDKFGIRLTDV 125
Cdd:PRK05933 357 EIIALGDVLGIRVLEV 372
PRK06033 PRK06033
flagellar motor switch protein FliN;
56-123 1.45e-05

flagellar motor switch protein FliN;


Pssm-ID: 180359 [Multi-domain]  Cd Length: 83  Bit Score: 40.90  E-value: 1.45e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 641263503  56 TIMDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLT 123
Cdd:PRK06033   3 TLDAVSVELMVVLGRSSMPIHQVLRMGRGAVIPLDATEADEVWILANNHPIARGEVLIDRNRIAVEVT 70
PRK06789 PRK06789
flagellar motor switch protein; Validated
 59-125 2.40e-05

flagellar motor switch protein; Validated


Pssm-ID: 180694 [Multi-domain]  Cd Length: 74  Bit Score: 39.85  E-value: 2.40e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 641263503  59 DIPVTISMEVGRSQISIRNLLQLNQGSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDV 125
Cdd:PRK06789   6 DIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKNGKMYVEIVEL 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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