|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
2-754 |
0e+00 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 845.67 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 2 KKSSRIIAFLLLVVLLFAGMAATYKSVIKNVNLGLDLQGGFEVLYQVDPLNKGDKIDKKALQSTAQTLENRVNVLGVSEP 81
Cdd:PRK13024 1 MRNKRWVIFFLTLLLLIGIYYASPKFVTKNINLGLDLQGGFEVLLEVSPADKGKKADREALDSTVEVLRNRIDGLGVSEP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 82 KIQVEEPNRIRVQLAGVTDQNEARKILSSQANLTIRDAED-----------------------KVKLSGSDIKQGSAKQE 138
Cdd:PRK13024 81 NIQREGNNRIRVELPGVQDPERARELLGSTAKLTFRDVTDppppgvggpvvgpdegkdtavlnPVLLSGDDLTDAGAKFD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 139 FkQETNQPTVTFKVKDKNKFK--KVTEEISKKRD--NVMVVWLDfkkgdsykkeaqkknPKFISAASVDQPINSDSVEIS 214
Cdd:PRK13024 161 Q-DQTNRPSVSLKLKSEGAKKwaKVTEKNSKKGPpnNRIAIVLD---------------PKVISAPTVNQPINGGSVQIS 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 215 GGFkgqeGVKKAKQIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLVAIIALTT 294
Cdd:PRK13024 225 GNF----TVEEAKDLANLLNAGALPAPLKIIESRSVGPTLGQDAIDAGIIAGIIGFALIFLFMLVYYGLPGLIANIALLL 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 295 YIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAV 374
Cdd:PRK13024 301 YIFLTLGALSSLGAVLTLPGIAGLVLGIGMAVDANVLIFERIKEELRKGKSLKKAFKKGFKNAFSTILDSNITTLIAAAI 380
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 375 LFFFGESSVKGFATMLLLGILMIFVTAVflSRFLLSLLVSSNIFKNQYWLFGVKKNKRHDINEGVdvhdlkTSFEKWNFV 454
Cdd:PRK13024 381 LFFFGTGPVKGFATTLIIGILASLFTAV--FLTRLLLELLVKRGDKKPFLFGVKKKKIHNINEGV------TIFDRIDFV 452
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 455 KLAKPLIGVSILIVVVGLVILYIFKLNLGIDFSSGTRVDFQSKQAITQQKVEQVVKDSGLKADQIQINGKDNKVATVQFK 534
Cdd:PRK13024 453 KKRKWFLIFSIVLVIAGIIIFFIFGLNLGIDFTGGTRYEIRTDQPVDLEQVRADLKELGLGEVNIVTFGSDNNQVLVRTY 532
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 535 DDLTRAQD------NKLSDNIKSKFGDT-PQINTVSPIIGQELAKNAMLALIYASIGIIIYVSLRFEWRMGLSSVLALLH 607
Cdd:PRK13024 533 GILSDDEEadteivAKLKNALKNDKGGTiPSSETVGPTVGKELARNAIIAVLIALIGILLYILIRFEWTFSLGAILALLH 612
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 608 DVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSINDTIVTFDRVRENLQkvkvITTTEQIDDIVNRSIRQTMTRSINTVLTV 687
Cdd:PRK13024 613 DVLIVIGFFSLFRLEVDLTFIAAILTIIGYSINDTVVVFDRIRENLR----LYKKKDLREIVNKSINQTLSRTINTSLTT 688
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 613391408 688 IVVVVAILFFGAPTIFNFTLALFIGLISGVFSSIFIAVPLWGIMKKRQLKKSPKHKLVVYKEKKSND 754
Cdd:PRK13024 689 LLVLLALLIFGGSSLRNFSLALLVGLIVGTYSSIFIAAPLWLDLEKRRLKKKKKRKKVKKWEVEKIE 755
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
30-402 |
2.17e-123 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 375.99 E-value: 2.17e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 30 KNVNLGLDLQGGFEVLYQVDP---LNKGD----KIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPNRIRVQLAGVTDQN 102
Cdd:COG0342 29 KPIKLGLDLQGGVHLLLEVDTdaaLDEDGdgirEVTEEALDQAIEILRNRVNELGVSEPVIQRQGDDRIVVELPGVQDPA 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 103 EARKILSSQANLTIRDAED---------------------------KVKLSGSDIKqgSAKQEFKQETNQPTVTFKVkdk 155
Cdd:COG0342 109 EAKELLGKTAKLEFRLVDDsadaqaavpagsellpcrdgqpylllgPVVLTGDDLT--DASAGFDQQTGQPVVSFTL--- 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 156 nkfkkvTEEISKK-----RDNV---MVVWLDFKkgdsykkeaqkknpkFISAASVDQPINSDSVEISGGFKGQEgvkkAK 227
Cdd:COG0342 184 ------DSEGAKKfadatRENVgkpLAIVLDGE---------------VISAPVIQEPITGGSAQITGSFTVEE----AQ 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 228 QIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLVAIIALTTYIYLTLVAFNFIS 307
Cdd:COG0342 239 DLALLLRAGALPAPLEIVEERTVGPTLGADSIEKGLIAGLIGLLLVALFMLLYYRLPGLVANIALALNVVLLLGVLSLLG 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 308 GVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFA 387
Cdd:COG0342 319 ATLTLPGIAGIILTIGMAVDANVLIFERIREELRAGRSLRAAIEAGFKRAFSTILDANVTTLIAAVVLFVLGTGPVKGFA 398
|
410
....*....|....*
gi 613391408 388 TMLLLGILMIFVTAV 402
Cdd:COG0342 399 VTLILGILISMFTAV 413
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
57-734 |
8.77e-111 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 356.72 E-value: 8.77e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 57 IDKKALQSTAQTLE---NRVNVLGVSEPKIQVEEPNRIRVQLAGVTDQNEARKILSSQANLTIR---------DA----- 119
Cdd:PRK14726 155 IDYRVSSALTQSIEvvrRRVAELGTTEPLIRRQGDDRIVVQVPGLVDPQRLKNLLNQPAKLSFRlvdssmpaqEAlngrp 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 120 -------------------EDKVKLSGSDIKQgsAKQEFKQETNQPTVTFKVKDKNKFKKVTEEISKKRDNVMVVwLDfk 180
Cdd:PRK14726 235 patsevlyslddppvpylvERRAFVSGENLVD--AQPVFDPQTNEPVVTFRLDAEGTQRFAQATQQNVGKHFAIV-LD-- 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 181 kgdsykkeaqkknPKFISAASVDQPINSDSVEISGGFKGQegvkKAKQIAELLNAGSLPVDLKEIYSNSVGAQFGQDALD 260
Cdd:PRK14726 310 -------------GQVISAPVIDEAITGGEGRISGNFSEQ----GANDLAVLLRAGALPATLTVVEERTVGPGLGADSIA 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 261 KTVFASFIGVALIYLFMLGFYRLPGLVAIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDEL 340
Cdd:PRK14726 373 AGLVAGLIAAILVAALMIGFYGFLGVIAVIALIVNVVLIIAVLSLLGATLTLPGIAGIVLTIGMAVDSNVLIYERIREEE 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 341 RIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAvflsrfllsllvssniFKN 420
Cdd:PRK14726 453 KTGHSLIQALDRGFSRALATIVDANVTILIAAVILFFLGSGAVRGFAVTLAVGILTTVFTA----------------FTL 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 421 QYWLFGVKKNKRH--DINEGVDVHdlktSFEKWN--FVKLAKPLIGVSILIVVVGLVILYIFKLNLGIDFSSGTRVDFQS 496
Cdd:PRK14726 517 TRSLVAVWLRRRRpkHLPKGVRTG----LFEGANirFMGIRRYVFTLSAALSLASLVLFATVGLNLGIDFTGGSLIEVRA 592
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 497 KQ-----AITQQKVEQV------VKDSGLKAD-QIQINGKDNKVATVQFKDDLTRAQdnkLSDNIkskfgDTPQINTVSP 564
Cdd:PRK14726 593 KQgnadiADIRARLNELnlgevqVERFGSPRDaLIRIASQDGGENAEQSAVTLVRGE---LEDDY-----DFRRVEVVGP 664
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 565 IIGQELAKNAMLALIYASIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSINDTIV 644
Cdd:PRK14726 665 AVSGELTMAATLGVLAALAAILIYIWIRFEWQFAVGAIIATLHDVILTLGLFVLTGIEFNLTSIAAILTIVGYSLNDTVV 744
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 645 TFDRVRENLQKVKVITTTEQIDDivnrSIRQTMTRSINTVLTVIVVVVAILFFGAPTIFNFTLALFIGLISGVFSSIFIA 724
Cdd:PRK14726 745 VYDRVRENLRRYKKMPLPILIDA----SINQTLSRTVLTSATTLLALLALYLFGGEVIRSFTFAMLFGVAVGTFSSIYIA 820
|
730
....*....|
gi 613391408 725 VPLWGIMKKR 734
Cdd:PRK14726 821 APVLIVFKLR 830
|
|
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
30-402 |
1.33e-108 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 338.74 E-value: 1.33e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 30 KNVNLGLDLQGGFEVLYQVDPLN-----------------------------------------------------KGDK 56
Cdd:PRK05812 39 KPMKLGLDLRGGVHFLLEVDMDDalkkrlesladdlrsllrekkiryggveitfrdaedrdkaiallrklsslteaELKE 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 57 IDKKALQSTAQTLENRVNVLGVSEPKIQVEEPNRIRVQLAGVTDQNEARKILSSQANLTIRDAedKVKLSGSDIKQGSAK 136
Cdd:PRK05812 119 ITEEALEQAIEIIRNRVNELGVAEPVIQRQGADRIVVELPGVQDTARAKEILGKTATLEFRLV--PVILTGDDITDASAS 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 137 QefkQETNQPTVTFKVKDK--NKFKKVTEEISKKRdnvMVVWLDfkkgdsykkeaqkknPKFISAASVDQPINSDSVEIS 214
Cdd:PRK05812 197 F---DQQGQPVVNITLDSEgaKKFADITKANIGKR---MAIVLD---------------GEVISAPVIQSAITGGSAQIT 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 215 GGFKGQEgvkkAKQIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLVAIIALTT 294
Cdd:PRK05812 256 GNFTAEE----ARDLALLLRAGALPAPLEIVEERTIGPSLGADSIRAGLIAGLIGLALVLLFMILYYRLFGLIANIALVA 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 295 YIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAV 374
Cdd:PRK05812 332 NLVLILAVLSLLGATLTLPGIAGIVLTIGMAVDANVLIFERIREELREGRSLRSAIEAGFKRAFSTILDSNITTLIAAII 411
|
410 420
....*....|....*....|....*...
gi 613391408 375 LFFFGESSVKGFATMLLLGILMIFVTAV 402
Cdd:PRK05812 412 LYALGTGPVKGFAVTLGIGILTSMFTAI 439
|
|
| SecF |
COG0341 |
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ... |
443-734 |
1.61e-106 |
|
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440110 [Multi-domain] Cd Length: 291 Bit Score: 327.01 E-value: 1.61e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 443 DLKTSFEKWNFVKLAKPLIGVSILIVVVGLVILYIFKLNLGIDFSSGTRVDFQSKQAITQQKVEQVVKDSGLKADQIQIN 522
Cdd:COG0341 1 RLFPGNTNIDFMKKRKIWFAISAVLILASIVSLFTRGLNLGIDFTGGTLIEVSFEQPVDLEEVREALEEAGLGDASVQTF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 523 GKDNKV-ATVQFKDDLTRAQDNKLSDNIKSKFGDT--PQINTVSPIIGQELAKNAMLALIYASIGIIIYVSLRFEWRMGL 599
Cdd:COG0341 81 GSDNDVlIRTPPLDGESAEEVEKVRAALKEAFGDVeiVRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEWRFAV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 600 SSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSINDTIVTFDRVRENLQKVKvittTEQIDDIVNRSIRQTMTR 679
Cdd:COG0341 161 GAVVALLHDVLITLGIFSLFGLEFDLTFIAALLTIIGYSLNDTVVVFDRIRENLRKYR----KMTLAEIINLSINQTLSR 236
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 613391408 680 SINTVLTVIVVVVAILFFGAPTIFNFTLALFIGLISGVFSSIFIAVPLWGIMKKR 734
Cdd:COG0341 237 TINTSLTTLLVVLALLFFGGETLRDFALALLIGIIVGTYSSIFIASPLLLWLGKR 291
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
34-402 |
6.58e-106 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 329.63 E-value: 6.58e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 34 LGLDLQGGFEVLYQVDP---------LNKGDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPNRIRVQLAGVTDQNEA 104
Cdd:TIGR01129 1 LGLDLRGGARVLLEVDMstavvlklsEAEVNAIRKDALEQVITILRNRVNALGVSEPVVQRQGKDRIVVELPGVTDTSRA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 105 RKILSSQANLTIRDAED----------------------------------KVKLSGSDIKQgsAKQEFKQETNQPTVTf 150
Cdd:TIGR01129 81 KDILGGTATLEFRLVDDestspddalagnvpagselldsrsgdpkyyllkkSPVLTGDHITD--ATSSVDQRSGQPVVS- 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 151 kvkdknkfkkvteeiskkrdnvmvVWLDFKKGDSYKKEAQKKNPK---------FISAASVDQPINSDSVEISGGFKGQE 221
Cdd:TIGR01129 158 ------------------------FSLDSEGARIFGDFTQANIGKrlaivldnkVVSAPTIQEAITGGSGQITGNFTAEE 213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 222 gvkkAKQIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLVAIIALTTYIYLTLV 301
Cdd:TIGR01129 214 ----ANDLALVLRSGALPAPLQILEERTIGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRLFGLIAAIALVINIVLILA 289
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 302 AFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGES 381
Cdd:TIGR01129 290 ILSAFGATLTLPGIAGLILTIGMAVDANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTG 369
|
410 420
....*....|....*....|.
gi 613391408 382 SVKGFATMLLLGILMIFVTAV 402
Cdd:TIGR01129 370 PVKGFAVTLAIGIIASLFTAL 390
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
30-727 |
1.48e-79 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 270.72 E-value: 1.48e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 30 KNVNLGLDLQGGFEVLYQVDPLNKGDkidkkaLQSTAQTLENRVNVLGVSEPKIQVEEPNRIRVQLAGVTDQNEARKILS 109
Cdd:PRK13023 43 KQVSLGLDLSGGSRLILQVQNAGKTD------LETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILT 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 110 SQANLTIRDAEDKvkLSGSDIKQGS--AKQEFKQETNQPTVTFKVKDKNKFKKVTEEISKKR------DNVMVVWLDfKK 181
Cdd:PRK13023 117 IRGNLSFRAMDDT--MSPDDAIRGTppADSEIVYSFDDPPVGYLLKKTPILTGHDITDAKASisaddgQPVITLTLD-DN 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 182 GDSYKKEAQKK----------NPKFISAASVDQPINSDSVEISGGFKgqegVKKAKQIAELLNAGSLPVDLKEIYSNSVG 251
Cdd:PRK13023 194 GRRRLADLTAQgnensfaivvDNQVVSAPTVSGPLDTSELQIEGAFD----LQAANNMAVVLRSGALPQAVTVLEERTIA 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 252 AQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLVAIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANII 331
Cdd:PRK13023 270 SALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLIGASISLASIAGLVLTIGLAVDAHIL 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 332 MYERIKDELRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRFLLSL 411
Cdd:PRK13023 350 IYERVREDRRKGYSVVQAMESGFYRALSTIVDANLTTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQ 429
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 412 lvssnifknqyWLFGVKKNKrhdinegVDVHDLK--TSFEKWNFVKLAKPLIGVSILIVVVGLVILYIFKLNLGIDFSSG 489
Cdd:PRK13023 430 -----------WVRTAKPKE-------VPKRRLKlvPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGG 491
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 490 TRVDFQSKQAITQ-QKVEQVVKDSGLKADQIqINGKDNKVATV-----QFKDDLTRAQDNKLSDNIKSKFgDTPQINTVS 563
Cdd:PRK13023 492 SMVELQARNGDANlEDINERLAELNIDSARV-LPAKSPRSALViigsqEVGDDAEQTVAVKLRGEFEQDY-SFQRVDVVG 569
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 564 PIIGQELAKNAMLALIYASIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSINDTI 643
Cdd:PRK13023 570 PTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVILSGMFIVFRMEFNLWSVAAILTIIGYSLNDTV 649
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 644 VTFDRVRENLQKVKvittTEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPTIFNFTLALFIGLISGVFSSIFI 723
Cdd:PRK13023 650 VIYDRVRENLRRYK----SAPLPAIIDASINQTLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFI 725
|
....
gi 613391408 724 AVPL 727
Cdd:PRK13023 726 AAPL 729
|
|
| 3a0501s07 |
TIGR00966 |
protein-export membrane protein SecF; This bacterial protein is always found with the ... |
479-724 |
8.17e-67 |
|
protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273368 [Multi-domain] Cd Length: 246 Bit Score: 221.38 E-value: 8.17e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 479 KLNLGIDFSSGTRVDFQSKQAITQQKVEQVVKDSGLKADQIQINGkDNKVATVQFK---DDLTRAQDNKLSDNIKSKFGD 555
Cdd:TIGR00966 1 GFNFGIDFTGGTVIETRLEQAADVAEVRDVLEKAGIEGVVIQEFG-SSHTIMIRIPtldTEQSEELREALEEALKNVDPD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 556 --TPQINTVSPIIGQELAKNAMLALIYASIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLT 633
Cdd:TIGR00966 80 aeIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFEWRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 634 IVGYSINDTIVTFDRVRENLQKVKVITTTEqiddIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPTIFNFTLALFIGL 713
Cdd:TIGR00966 160 IIGYSINDTVVVFDRIRENLRKYTRKTFTE----VINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGV 235
|
250
....*....|.
gi 613391408 714 ISGVFSSIFIA 724
Cdd:TIGR00966 236 IVGTYSSIFIA 246
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
209-739 |
4.08e-66 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 238.99 E-value: 4.08e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 209 DSVEISGGFKGQEgvkkAKQIAELLNAGSLPVdLKEIYSNSV-GAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLV 287
Cdd:PRK12911 862 DHASVSGKFSHRE----VHRLATDLKSGAMSF-VPEVLSEEViSPELGKSQRTQGIISVCLGLAVLIVLMSVYYRFGGVI 936
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 288 AIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTIKQAFSKANKSSFLTIFDSNLT 367
Cdd:PRK12911 937 ASGAVLLNLLLIWAALQYLDAPLTLSGLAGIVLAMGMAVDANVLVFERIREEYLLSRSLSESVEAGYKKAFSAIFDSNLT 1016
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 368 TVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRfllsllvssniFKNQYWLFGVKKNKRHDINEGVDVhdlkts 447
Cdd:PRK12911 1017 TILASALLLMLDTGPIKGFALTLIIGIFSSMFTALFMTK-----------FFFMIWMNKTQETQLHMMNKFIGI------ 1079
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 448 feKWNFVKLAKPLIGVSILIVVVGLVILYIFKLN--LGIDFSSGTRVDFQSKQaITQQKVEQVVKDSGLKADQIQINGKD 525
Cdd:PRK12911 1080 --KHDFLKECKRLWVVSGSVLVLGCVALGFGAWNsvLGMDFKGGYALTLDPSD-VCEYDVEQMRSKLRKKFQQIGLSSRD 1156
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 526 NKVAT--------VQFKDD-LTRAQ----------DNKLS-----------DNIKSKFGDTPQI-NTVSPIIGQELAKNA 574
Cdd:PRK12911 1157 FRIRTfdssekikIYFSQNaLDRVEaiegagseqsDHHLAlvlgvlsdtgsDTSSEVFDATQNFwFKVSGQLSNKMRTQA 1236
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 575 MLALIYASIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAI-----FSLFRIEVDLTFIAAVLTIVGYSINDTIVTFDRV 649
Cdd:PRK12911 1237 VIALFGALGIILLYVSLRFEWRYAFSAICALIHDLLATCAVlvalhFFLQKIQIDLQAIGALMTVLGYSLNNTLIIFDRI 1316
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 650 RENLQKvKVITTteqIDDIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPTIFNFTLALFIGLISGVFSSIFIAVPLWG 729
Cdd:PRK12911 1317 REDRQE-KLFTP---MPILINDALQKTLGRTVMTTATTLSVLLILLFVGGGSIFNFAFIMTIGILLGTLSSLYIAPPLLL 1392
|
570
....*....|
gi 613391408 730 IMKKRQLKKS 739
Cdd:PRK12911 1393 FMVRKEERNS 1402
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
557-734 |
4.80e-59 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 198.21 E-value: 4.80e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 557 PQINTVSPIIGQELAKNAMLALIYASIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVG 636
Cdd:pfam02355 16 ISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEWRFALGAIIALAHDVIITVGVFSLFGIEVDLATVAALLTIIG 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 637 YSINDTIVTFDRVRENLQKvkviTTTEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPTIFNFTLALFIGLISG 716
Cdd:pfam02355 96 YSVNDTVVVFDRVRENLRK----KTRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDFSLALLVGVIVG 171
|
170
....*....|....*...
gi 613391408 717 VFSSIFIAVPLWGIMKKR 734
Cdd:pfam02355 172 TYSSIFIASPILLDLGER 189
|
|
| 2A0604s01 |
TIGR00916 |
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ... |
557-721 |
3.78e-43 |
|
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273336 [Multi-domain] Cd Length: 192 Bit Score: 154.72 E-value: 3.78e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 557 PQINTVSPIIGQELAKNAMLALIYASIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVG 636
Cdd:TIGR00916 32 PVVGTVGPTLGGELIKAGIIALLIGLVLVLLYMLLRYEWRGAIAAIAALVHDVILILGVLSLFGATLTLPGIAGLLTIIG 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 637 YSINDTIVTFDRVRENLQKVKVITTTEqiddIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPTIFNFTLALFIGLISG 716
Cdd:TIGR00916 112 YSVDDTVVIFDRIREELRKYKGRTFRE----AINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAG 187
|
....*
gi 613391408 717 VFSSI 721
Cdd:TIGR00916 188 TYSSI 192
|
|
| secD |
PRK12933 |
protein translocase subunit SecD; |
62-402 |
2.08e-42 |
|
protein translocase subunit SecD;
Pssm-ID: 183831 [Multi-domain] Cd Length: 604 Bit Score: 163.32 E-value: 2.08e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 62 LQSTAQTLENRVNVLGVSEPKIQVEEPNRIRVQLAGVTDQNEARKILSSQANLtirdAEDKVKLSGSdikqGSAKqEFKQ 141
Cdd:PRK12933 232 VQQNLQIMRSRIEELGITEALVQRQGEHRIRIELPGVQDPAAAKNVIGATASL----AFYEVKESGS----VNAK-VLKD 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 142 ETNQPTVtfkvkDKNKFKKVTEEISKKRDNV-------MVVWLDFKKG-------------------DSYKKEAQ---KK 192
Cdd:PRK12933 303 KNGRPVY-----VARRPVLGGEHIVDARASLgemgmaeVNISLDRAGGkkmsdfsrdnigkpmatsySEYSRDEQgktKQ 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 193 NPKFISAASVdQPINSDSVEISGGFKGQEgvkkAKQIAELLNAGSL--PVDLKEiySNSVGAQFGQDALDKTVFASFIGV 270
Cdd:PRK12933 378 SEEVISVATI-QSQLGDRFRITGAGSYQE----AQQLALLLRAGSLtaPVTIVE--ERTIGPSLGAENIENGFAALALGM 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 271 ALIYLFMLGFYRLPGLVAIIALTTYIYLTLVAFNFISG-VLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTIKQA 349
Cdd:PRK12933 451 GITLLFMALWYRRLGWVANVALIANMVCLFGLLALIPGaVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFAQA 530
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 613391408 350 FSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAV 402
Cdd:PRK12933 531 IDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGI 583
|
|
| secF |
PRK13021 |
preprotein translocase subunit SecF; Reviewed |
450-755 |
1.22e-41 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 237274 [Multi-domain] Cd Length: 297 Bit Score: 153.86 E-value: 1.22e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 450 KWNFVKLAkpligVSILIVVVGLVILYIFKLNLGIDFSSGTRVDFQSKQAITQQKVEQVVkDSGLKADQIQINGKDNKVA 529
Cdd:PRK13021 8 KWRYISSA-----ISIVLMLLSLTIIGVKGFNWGLDFTGGVVTEVQLDRKITSSELQPLL-NAAYQQEVSVISASEPGRW 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 530 TVQFKDDLTRAQDNKLSDNIKSKFGDTPQINT--VSPIIGQELAKNAMLALIYASIGIIIYVSLRFEWRMGLSSVLALLH 607
Cdd:PRK13021 82 VLRYAPADTAQSNVDIQQALAPLGTEVQVLNSsiVGPQVGQELAEQGGLALLVAMLCILGYLSYRFEWRLASGALFALVH 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 608 DVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSINDTIVTFDRVRENLqkvkVITTTEQIDDIVNRSIRQTMTRSINTVLTV 687
Cdd:PRK13021 162 DVIFVLAFFALTQMEFNLTVLAAVLAILGYSLNDSIIIADRIRELL----IAKPKLAIQEINNQAIVATFSRTMVTSGTT 237
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 613391408 688 IVVVVAILFFGAPTIFNFTLALFIGLISGVFSSIFIAVPLwgimkKRQLKKSPKHklvvYKEKKSNDE 755
Cdd:PRK13021 238 LMTVGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSL-----PELLGLSPEH----YKVQVISDT 296
|
|
| 2A0604s01 |
TIGR00916 |
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ... |
221-402 |
5.29e-34 |
|
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273336 [Multi-domain] Cd Length: 192 Bit Score: 128.53 E-value: 5.29e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 221 EGVKKAKQIAELLNAGSLPVDLKEIYS----NSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLVAIIALTTY- 295
Cdd:TIGR00916 4 EGAKIFADFAANIGKPAIVLDNAKVISapvvGTVGPTLGGELIKAGIIALLIGLVLVLLYMLLRYEWRGAIAAIAALVHd 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 296 IYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRI--GRTIKQAFSKANKSSFLTIFDSNLTTVIAAA 373
Cdd:TIGR00916 84 VILILGVLSLFGATLTLPGIAGLLTIIGYSVDDTVVIFDRIREELRKykGRTFREAINLGINQTLSRIIDTNVTTLLAVL 163
|
170 180
....*....|....*....|....*....
gi 613391408 374 VLFFFGESSVKGFATMLLLGILMIFVTAV 402
Cdd:TIGR00916 164 ALYVFGGGAIKGFALTLGIGVIAGTYSSI 192
|
|
| secD |
PRK08343 |
preprotein translocase subunit SecD; Reviewed |
24-400 |
1.55e-28 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 236245 [Multi-domain] Cd Length: 417 Bit Score: 118.82 E-value: 1.55e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 24 TYKSVIKNVNLGLDLQGGFEVLYQVDPLnkgdkIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPNRIRVQLAGVtDQNE 103
Cdd:PRK08343 32 GGPGGFTNLQYGLDLSGGSWIQLKLEGP-----VTQETMDLVVEILESRLNALGLKDIKVYPVGDQYIVVEVPGV-DADT 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 104 ARKILSSQANLTIR----DAEDKVKLSGSDIKQ-GSAKQEFKQETNQPTVTFkvkdknkfkkvTEEISKKRDNVMVvwld 178
Cdd:PRK08343 106 AKEIIEKQGVFEARiqtpGNNNETVLTGDDIESvGSPSQDPSGGAWGVPFTL-----------SEDGAEKFAEVAK---- 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 179 fKKGDSYKKEAQK----KNPKFISAASVD----QPINSDSVEISGGFKGQ--EGVKKAKQIAELLNAGSLPVDLKEIYSN 248
Cdd:PRK08343 171 -GKGATDDPSGHPldmyLDGELIYAAPLSpdlaSGLASGPVVITVGSTGTteEAKEEAKELYIHLRSGALPVKLDIEGSG 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 249 SVGAQFGQDALDKTVFA---SFIGVALIYLFMlgfYRLPGLVAIIALTT----YIYLTLVAfnFISGVLTLPGLAALVLG 321
Cdd:PRK08343 250 SVSPSLGEQFKKGSLIAgllALLAVALVVFLR---YREPRIALPMVITSlsevIIILGFAA--LIGWQLDLASIAGIIAV 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 322 VGMAVDANIIMYERIKDELRIGRT--IKQAFSKAnkssFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILM-IF 398
Cdd:PRK08343 325 IGTGVDDLIIITDEVLHEGKVPSRkvFLSRIKRA----FFIIFAAAATTIAAMSPLAVMGLGDLKGFAITTILGVLIgVL 400
|
..
gi 613391408 399 VT 400
Cdd:PRK08343 401 IT 402
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
225-447 |
3.31e-17 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 86.76 E-value: 3.31e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 225 KAKQIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLVAIIALTTYIYLTLVAFN 304
Cdd:NF037998 410 IARTIEALINQTTSGFTFKVNGISEFNPVVTLLMLIASIIFLLILAIAIMIYLLFAYRLLGLFAIIIALTSISLTLYSPT 489
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 305 FISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRI-GRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSV 383
Cdd:NF037998 490 WFGLAIGPESITAIFIAIGLVLESCSLLFEAFKKHLYKnKRSIEESFKIANKETIGIIVDALVVLLIPNLSLFWIGSNSI 569
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 613391408 384 KGFATMLLLGILMIFVTAVFLSRFLLSLLVSSNIFKNQYWLFGVKKNkrhDINEGVDVHDLKTS 447
Cdd:NF037998 570 KSFATILLVGVIISLVLVIIVARLMIWLTIKLQWFKKYPWLLPLDTD---FANQGVAILNYKIS 630
|
|
| PRK08578 |
PRK08578 |
preprotein translocase subunit SecF; Reviewed |
458-715 |
3.31e-16 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 236302 [Multi-domain] Cd Length: 292 Bit Score: 79.98 E-value: 3.31e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 458 KPLIGVSILIVVVGLVILYI------FKLNLGIDFSSGTRVDFQSKQAiTQQKVEQVVKDSGLKADQIQINGKdnKVATV 531
Cdd:PRK08578 14 RQLIAIPLAVLLLSLLLLGGtfattgSPVKLGIDFTGGTEITIQTNDA-SPDELESALSGEPGVDVRKGSGNG--YIITF 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 532 QFKDDltrAQDNKLSDNIKSKFGD------TPQINTVSPIIGQELAKNAMLALIYASIGIIIYVSLRFewRMGLSS---V 602
Cdd:PRK08578 91 GSGDD---TDVDKLADAVKEFFNVdsiselNYSEKQIGPTFGSQFQEQALKAVGFAFIGMAVVVFLIF--RTPVPSlavI 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 603 LALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSINDTIvtfdrvrenLQKVKVITTTEQIDDIVNRSIRQTMTRSIN 682
Cdd:PRK08578 166 LSAFSDIIIALALMNLFGIELSLATVAALLMLIGYSVDSDI---------LLTTRVLKRRGTFDESIKRAMRTGITMTLT 236
|
250 260 270
....*....|....*....|....*....|...
gi 613391408 683 TVLTVIVVVVAILFFGAPTIFNFTLALFIGLIS 715
Cdd:PRK08578 237 TIAAMAVLYIVSTIPQAEVLANIAAVLIFGLLA 269
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
268-721 |
2.35e-11 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 67.19 E-value: 2.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 268 IGVALIYLFMLGFYR------LPGLVAIIALTT---YIYLTLVAFNFISGVLtlpglAALVLGVGmaVDANIIMYERIKD 338
Cdd:COG1033 226 LALLLILLLLFLFFRslrgvlLPLLVVLLAVIWtlgLMGLLGIPLSPLTILV-----PPLLLAIG--IDYGIHLLNRYRE 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 339 ELRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRFLLSllvssnif 418
Cdd:COG1033 299 ERRKGLDKREALREALRKLGPPVLLTSLTTAIGFLSLLFSDIPPIRDFGIVAAIGVLLAFLTSLTLLPALLS-------- 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 419 knqywLFGVKKNKRHDINEGVDVHDLKTSFEKWNfVKLAKPLIGVSILIVVVGlvILYIFKLNLGIDFS----------- 487
Cdd:COG1033 371 -----LLPRPKPKTRRLKKPPELGRLLAKLARFV-LRRPKVILVVALVLAVVS--LYGISRLKVEYDFEdylpedspirq 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 488 ---------SGTR-----VDFQSKQAITQ----QKVEQVVKD--------------SGLKADQIQINGKDNKVATVQFKD 535
Cdd:COG1033 443 dldfieenfGGSDplevvVDTGEPDGLKDpevlKEIDRLQDYleslpevgkvlslaDLVKELNQALNEGDPKYYALPESR 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 536 DLTRAQDNKLSD-------------------NIKSKFGDTPQINTVSPIIGQELAKNA---------------------- 574
Cdd:COG1033 523 ELLAQLLLLLSSppgddlsrfvdedysaarvTVRLKDLDSEEIKALVEEVRAFLAENFppdgvevtltgsavlfaaines 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 575 -------MLALIYASIGIIIYVSLRfEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDL-TFIAAVLTIvGYSINDTIVTF 646
Cdd:COG1033 603 viesqirSLLLALLLIFLLLLLAFR-SLRLGLISLIPNLLPILLTFGLMGLLGIPLNIaTAVVASIAL-GIGVDYTIHFL 680
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 613391408 647 DRVRENLQKvkvittteqiddivNRSIRQTMTRSINTVltvivvvvailffGAPTIFNfTLALFIGLISGVFSSI 721
Cdd:COG1033 681 SRYREERRK--------------GGDLEEAIRRALRTT-------------GKAILFT-SLTLAAGFGVLLFSSF 727
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
561-727 |
2.33e-10 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 63.08 E-value: 2.33e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 561 TVSPIIGQELAKNAMLALIYASIGIIIYVSLRFEWrMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAA-VLTIvGYSI 639
Cdd:TIGR01129 237 TIGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRL-FGLIAAIALVINIVLILAILSAFGATLTLPGIAGlILTI-GMAV 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 640 NDTIVTFDRVRENLQKVKVITTTeqiddiVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPTIFNFTLALFIGLISGVFS 719
Cdd:TIGR01129 315 DANVLIYERIKEELRLGKSVRQA------IEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFT 388
|
....*...
gi 613391408 720 SIFIAVPL 727
Cdd:TIGR01129 389 ALVFTRLL 396
|
|
| SecF |
COG0341 |
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ... |
207-401 |
1.64e-09 |
|
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440110 [Multi-domain] Cd Length: 291 Bit Score: 59.68 E-value: 1.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 207 NSDSVEISGGFKGQEGVKKAKQIAELLNAGSLPVDLKEiySNSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLP-G 285
Cdd:COG0341 82 SDNDVLIRTPPLDGESAEEVEKVRAALKEAFGDVEIVR--VEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEWRfA 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 286 LVAIIALTTYIYLTLVAF---------NFISGVLTLpglaalvlgVGMAVDANIIMYERIKDELRI--GRTIKQAFSKAN 354
Cdd:COG0341 160 VGAVVALLHDVLITLGIFslfglefdlTFIAALLTI---------IGYSLNDTVVVFDRIRENLRKyrKMTLAEIINLSI 230
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 613391408 355 KSSFL-TIFDSnLTTVIAAAVLFFFGESSVKGFATMLLLGILM-----IFVTA 401
Cdd:COG0341 231 NQTLSrTINTS-LTTLLVVLALLFFGGETLRDFALALLIGIIVgtyssIFIAS 282
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
243-395 |
3.85e-09 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 56.85 E-value: 3.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 243 KEIYS-NSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLP-GLVAIIALTTYIYLTLVAFNFISGVLTLPGLAALVL 320
Cdd:pfam02355 13 AEIISiETVGPTVGSELARKAVLALLFALLLILIYVGLRFEWRfALGAIIALAHDVIITVGVFSLFGIEVDLATVAALLT 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 613391408 321 GVGMAVDANIIMYERIKDELR--IGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGIL 395
Cdd:pfam02355 93 IIGYSVNDTVVVFDRVRENLRkkTRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDFSLALLVGVI 169
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
268-402 |
6.30e-09 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 59.39 E-value: 6.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 268 IGVALIYLFMLGFYR---LPGLVAIIALTTYIyLTLVAFNFISGVLTLPGLA---ALVLGVGMAVDANIIMYERIKDELR 341
Cdd:COG2409 177 ITLPVALVVLLLVFRslvAALLPLLTAGLAVG-VALGLLALLAAFTDVSSFApnlLTMLGLGVGIDYALFLVSRYREELR 255
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 613391408 342 IGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAV 402
Cdd:COG2409 256 AGEDREEAVARAVATAGRAVLFSGLTVAIALLGLLLAGLPFLRSMGPAAAIGVAVAVLAAL 316
|
|
| 3a0501s07 |
TIGR00966 |
protein-export membrane protein SecF; This bacterial protein is always found with the ... |
207-394 |
1.11e-08 |
|
protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273368 [Multi-domain] Cd Length: 246 Bit Score: 56.51 E-value: 1.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 207 NSDSVEISGGFKGQEGVKKAKQIAELLNA-GSLPVDLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLFM-LGFYRLP 284
Cdd:TIGR00966 44 FGSSHTIMIRIPTLDTEQSEELREALEEAlKNVDPDAEIRSIDAVGPSVGGELARKAVLALLAALVLILIYItVRFEWRF 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 285 GLVAIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRI--GRTIKQAFSKANKSSFLTIF 362
Cdd:TIGR00966 124 ALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLTIIGYSINDTVVVFDRIRENLRKytRKTFTEVINLSINQTLSRTI 203
|
170 180 190
....*....|....*....|....*....|..
gi 613391408 363 DSNLTTVIAAAVLFFFGESSVKGFATMLLLGI 394
Cdd:TIGR00966 204 NTSLTTLLAVLALYVFGGGVIKDFSLALLVGV 235
|
|
| COG4258 |
COG4258 |
Predicted exporter [General function prediction only]; |
221-401 |
2.47e-08 |
|
Predicted exporter [General function prediction only];
Pssm-ID: 443400 [Multi-domain] Cd Length: 783 Bit Score: 57.55 E-value: 2.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 221 EGVKKAKQIAELLNA--GSLPVDLKEIySNSVGAQFGQDALDKtVFASFIGVALIYLFMLGFYRLPGLVAIIALTTYIyL 298
Cdd:COG4258 603 RGVDDAAALRAAAAGlpGVRLVDRKAE-SSSLFGRYRNDALWL-LLLALLLILLLLLLRLRSLRRALRVLLPPLLAVL-L 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 299 TLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTikqafskankssFLTIFDSNLTTVIAAAVLFFF 378
Cdd:COG4258 680 TLAILGLLGIPLNLFHLIALLLVLGIGIDYALFFTEGLLDKGELART------------LLSILLAALTTLLGFGLLAFS 747
|
170 180
....*....|....*....|...
gi 613391408 379 GESSVKGFATMLLLGILMIFVTA 401
Cdd:COG4258 748 STPALRSFGLTVLLGILLALLLA 770
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
267-398 |
5.58e-08 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 56.41 E-value: 5.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 267 FIGVALIYLFMLGFYR---------LPGLVAIIALTTYIYLTLVAFNFISGVLtlpglaaLVLGVGMAVDANIIMYERIK 337
Cdd:COG1033 612 LLALLLIFLLLLLAFRslrlglislIPNLLPILLTFGLMGLLGIPLNIATAVV-------ASIALGIGVDYTIHFLSRYR 684
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 613391408 338 DELRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFfgeSSVKGFATM-LLLGILMIF 398
Cdd:COG1033 685 EERRKGGDLEEAIRRALRTTGKAILFTSLTLAAGFGVLLF---SSFPPLADFgLLLALGLLV 743
|
|
| MMPL |
pfam03176 |
MMPL family; Members of this family are putative integral membrane proteins from bacteria. ... |
167-402 |
5.79e-08 |
|
MMPL family; Members of this family are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport.
Pssm-ID: 308676 [Multi-domain] Cd Length: 332 Bit Score: 55.38 E-value: 5.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 167 KKRDNVMVVWLDFKKGDSYKKEAQKKNPKfisAASVdqPINSDSVeiSGGFKGQEGVKKAKQIAELLNAGSlpvDLKeIY 246
Cdd:pfam03176 57 RADTGHVGSVQDFWGDPDTAALFVSPDGK---AAYV--VVTLEGD--PGTTEADESVAAVRDAVEQAPPPE---GLK-AY 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 247 SNSVGAQFG--QDALDKTVF-ASFIGVALIYLFMLGFYR------LPGLVAIIALTTYIYLTLVaFNFISGV----LTLP 313
Cdd:pfam03176 126 LTGPAATVAdlRDAGDRDLGlIEAVTLVVIFIILLIVYRsvvaalLPLLTVGLSLGAAQGLVAI-LAHILGIglstFALN 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 314 GLAALVLGVGmaVDANIIMYERIKDELRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLG 393
Cdd:pfam03176 205 LLVVLLIAVG--TDYALFLVSRYREELRAGEDREEAVIRAVRGTGKVVTAAGLTVAIAMLALSFARLPVFAQVGPTIAIG 282
|
....*....
gi 613391408 394 ILMIFVTAV 402
Cdd:pfam03176 283 VLVDVLAAL 291
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
561-742 |
2.49e-07 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 54.34 E-value: 2.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 561 TVSPIIGQELAKNAMLALIYASIGIIIYVsLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSIN 640
Cdd:PRK14726 361 TVGPGLGADSIAAGLVAGLIAAILVAALM-IGFYGFLGVIAVIALIVNVVLIIAVLSLLGATLTLPGIAGIVLTIGMAVD 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 641 DTIVTFDRVRENLQKVKviTTTEQIDDIVNRSIRQTmtrsINTVLTVIVVVVAILFFGAPTIFNFTLALFIGLISGVFSS 720
Cdd:PRK14726 440 SNVLIYERIREEEKTGH--SLIQALDRGFSRALATI----VDANVTILIAAVILFFLGSGAVRGFAVTLAVGILTTVFTA 513
|
170 180
....*....|....*....|..
gi 613391408 721 IFIAVPLWGIMKKRQLkksPKH 742
Cdd:PRK14726 514 FTLTRSLVAVWLRRRR---PKH 532
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
225-402 |
3.47e-07 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 53.69 E-value: 3.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 225 KAKQIAELLNAGSLPVDLKeIYSnsvgaQFGQDALDKTVFASFIGVALIYLFMLGFYR-LPGLVAIIALTTYIYltlvAF 303
Cdd:TIGR00921 168 NPPSGKFLDVTGSPAINYD-IER-----EFGKDMGTTMAISGILVVLVLLLDFKRWWRpLLPLVIILFGVAWVL----GI 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 304 NFISGV-LTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESS 382
Cdd:TIGR00921 238 MGWLGIpLYATTLLAVPMLIGVGIDYGIQTLNRYEEERDIGRAKGEAIVTAVRRTGRAVLIALLTTSAGFAALALSEFPM 317
|
170 180
....*....|....*....|
gi 613391408 383 VKGFATMLLLGILMIFVTAV 402
Cdd:TIGR00921 318 VSEFGLGLVAGLITAYLLTL 337
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
558-651 |
3.89e-07 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 53.20 E-value: 3.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 558 QINTVSPIIGQELAKNAMLALIYASIGIIIYVSLRFeWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAA-VLTIvG 636
Cdd:COG0342 257 EERTVGPTLGADSIEKGLIAGLIGLLLVALFMLLYY-RLPGLVANIALALNVVLLLGVLSLLGATLTLPGIAGiILTI-G 334
|
90
....*....|....*
gi 613391408 637 YSINDTIVTFDRVRE 651
Cdd:COG0342 335 MAVDANVLIFERIRE 349
|
|
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
561-653 |
1.54e-06 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 51.38 E-value: 1.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 561 TVSPIIGQELAKNAMLALIYASIGIIIY--VSLRFewrMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAA-VLTIvGY 637
Cdd:PRK05812 286 TIGPSLGADSIRAGLIAGLIGLALVLLFmiLYYRL---FGLIANIALVANLVLILAVLSLLGATLTLPGIAGiVLTI-GM 361
|
90
....*....|....*.
gi 613391408 638 SINDTIVTFDRVRENL 653
Cdd:PRK05812 362 AVDANVLIFERIREEL 377
|
|
| secD |
PRK08343 |
preprotein translocase subunit SecD; Reviewed |
559-649 |
4.23e-06 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 236245 [Multi-domain] Cd Length: 417 Bit Score: 49.87 E-value: 4.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 559 INTVSPIIGQELAKNAMLALIYASIGIIIYVSLRF-EWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGY 637
Cdd:PRK08343 248 SGSVSPSLGEQFKKGSLIAGLLALLAVALVVFLRYrEPRIALPMVITSLSEVIIILGFAALIGWQLDLASIAGIIAVIGT 327
|
90
....*....|..
gi 613391408 638 SINDTIVTFDRV 649
Cdd:PRK08343 328 GVDDLIIITDEV 339
|
|
| secF |
PRK13021 |
preprotein translocase subunit SecF; Reviewed |
238-395 |
1.04e-05 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 237274 [Multi-domain] Cd Length: 297 Bit Score: 47.93 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 238 LPVDLKEIYSNSVGAQFGQDALDKTVFASFIGVALI--YLFMLGFYRLpGLVAIIALTTYIYLTLVAFNFISGVLTLPGL 315
Cdd:PRK13021 104 LGTEVQVLNSSIVGPQVGQELAEQGGLALLVAMLCIlgYLSYRFEWRL-ASGALFALVHDVIFVLAFFALTQMEFNLTVL 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 316 AALVLGVGMAVDANIIMYERIKDELRIGR--TIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLG 393
Cdd:PRK13021 183 AAVLAILGYSLNDSIIIADRIRELLIAKPklAIQEINNQAIVATFSRTMVTSGTTLMTVGALWIMGGGPLEGFSIAMFIG 262
|
..
gi 613391408 394 IL 395
Cdd:PRK13021 263 IL 264
|
|
| AcrB |
COG0841 |
Multidrug efflux pump subunit AcrB [Defense mechanisms]; |
207-379 |
3.27e-05 |
|
Multidrug efflux pump subunit AcrB [Defense mechanisms];
Pssm-ID: 440603 [Multi-domain] Cd Length: 1015 Bit Score: 47.41 E-value: 3.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 207 NSDSVEISggfkgqEGVKKA-KQIAELLNAGslpVDLKEIYSNSVgaqFGQDALDKTVFASFIGVAL----IYLFMLGFy 281
Cdd:COG0841 289 GANALEVA------DAVRAKlEELQASLPEG---VELTIVYDQSE---FIRASIEEVVKTLLEAILLvvlvVFLFLRSW- 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 282 RLPgLVAIIA-----LTTYIYLTLVAF--NFISgvltlpgLAALVLGVGMAVDANIIMYERIKDELRIGRTIKQAFSKAN 354
Cdd:COG0841 356 RAT-LIPAVAipvslIGTFAVMYLLGFslNILT-------LFALVLAIGIVVDDAIVVVENIERHMEEGLSPLEAAIKGA 427
|
170 180
....*....|....*....|....*
gi 613391408 355 KSSFLTIFDSNLTTVIAAAVLFFFG 379
Cdd:COG0841 428 REVAGAVIASTLTLVAVFLPLAFMG 452
|
|
| PRK08578 |
PRK08578 |
preprotein translocase subunit SecF; Reviewed |
178-395 |
5.53e-05 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 236302 [Multi-domain] Cd Length: 292 Bit Score: 45.69 E-value: 5.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 178 DFKKGDSYKKEAQKKNPKFISAASVDQPINSDSVEISGG----FKGQEGVKKAKQIAELLNAGSLPVDLKEIYS-NSVGA 252
Cdd:PRK08578 47 DFTGGTEITIQTNDASPDELESALSGEPGVDVRKGSGNGyiitFGSGDDTDVDKLADAVKEFFNVDSISELNYSeKQIGP 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 253 QFGQDALDKTVFA---SFIGVALIYLFmlgFYR--LPGLVAIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVD 327
Cdd:PRK08578 127 TFGSQFQEQALKAvgfAFIGMAVVVFL---IFRtpVPSLAVILSAFSDIIIALALMNLFGIELSLATVAALLMLIGYSVD 203
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 613391408 328 ANIIMYERIkdeLRIGRTIKQAFskanKSSFLTIFDSNLTTVIAAAVL----FFFGESSVKGFATMLLLGIL 395
Cdd:PRK08578 204 SDILLTTRV---LKRRGTFDESI----KRAMRTGITMTLTTIAAMAVLyivsTIPQAEVLANIAAVLIFGLL 268
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
266-395 |
2.24e-04 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 44.83 E-value: 2.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 266 SFIGVALIYLFMLGFYR--LPGLVAIIALT-------TYIYLTLVAFNfisgvLTLPGLAALVLGVGMavDANIIMYERI 336
Cdd:TIGR00921 573 TIAGAILVLMILLAVFRnpIKAVFPLIAIGsgilwaiGLMGLRGIPSF-----LAMATTISIILGLGM--DYSIHLAERY 645
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 613391408 337 KDElRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGIL 395
Cdd:TIGR00921 646 FEE-RKEHGPKEAITHTMERTGPGILFSGLTTAGGFLSLLLSHFPIMRNFGLVQGIGVL 703
|
|
| HpnN |
TIGR03480 |
hopanoid biosynthesis associated RND transporter like protein HpnN; The genomes containing ... |
266-401 |
3.40e-03 |
|
hopanoid biosynthesis associated RND transporter like protein HpnN; The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Pssm-ID: 274598 [Multi-domain] Cd Length: 862 Bit Score: 40.75 E-value: 3.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 266 SFIGVALIYLFMLGFYR------LPGLVAIIALTTYIYLTLVAFNFiSGVLTLPglaaLVLGVGmaVDANIIMYERikde 339
Cdd:TIGR03480 721 ALVAITVLLLLTLRRVRdvllvlAPLLLAGLLTVAAMVLLGIPFNF-ANIIALP----LLLGLG--VDFGIYMVHR---- 789
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 613391408 340 LRIGRTIKQAFSkanKSSFLTIFDSNLTTVIAAAVLFFfgeSSVKGFATM---LLLGIL------MIFVTA 401
Cdd:TIGR03480 790 WRNGVDSGNLLQ---SSTARAVFFSALTTATAFGSLAV---SSHPGTASMgilLSLGLGltllctLIFLPA 854
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
559-741 |
3.95e-03 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 40.92 E-value: 3.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 559 INTVSPIIGQELAKNAMLALIYASIGIIIYvsLRFEWRM-GLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGY 637
Cdd:NF037998 432 ISEFNPVVTLLMLIASIIFLLILAIAIMIY--LLFAYRLlGLFAIIIALTSISLTLYSPTWFGLAIGPESITAIFIAIGL 509
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613391408 638 SINDTIVTFDRVRENLQKVKvitttEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPTIFNFTLALFIGLISGV 717
Cdd:NF037998 510 VLESCSLLFEAFKKHLYKNK-----RSIEESFKIANKETIGIIVDALVVLLIPNLSLFWIGSNSIKSFATILLVGVIISL 584
|
170 180
....*....|....*....|....*
gi 613391408 718 FSSIFIAVPL-WGIMKKRQLKKSPK 741
Cdd:NF037998 585 VLVIIVARLMiWLTIKLQWFKKYPW 609
|
|
| Sec_GG |
pfam07549 |
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export ... |
474-500 |
4.58e-03 |
|
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force. This alignment encompasses a -GG- motif typically found in N-terminal half of the SecD/SecF proteins.
Pssm-ID: 462205 [Multi-domain] Cd Length: 27 Bit Score: 34.95 E-value: 4.58e-03
10 20
....*....|....*....|....*..
gi 613391408 474 ILYIFKLNLGIDFSSGTRVDFQSKQAI 500
Cdd:pfam07549 1 SLFTRGLNLGLDFTGGTVIELQFDQPV 27
|
|
| |
