|
Name |
Accession |
Description |
Interval |
E-value |
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
4-246 |
4.72e-154 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 428.71 E-value: 4.72e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMRRNI 83
Cdd:COG3638 3 LELRNLSKRYPGGTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRGRALRRLRRRI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNVLSGRVGYHPTWKMVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALC 163
Cdd:COG3638 83 GMIFQQFNLVPRLSVLTNVLAGRLGRTSTWRSLLGLFPPEDRERALEALERVGLADKAYQRADQLSGGQQQRVAIARALV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 164 QESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASEATDDVFSKI 243
Cdd:COG3638 163 QEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRYADRIIGLRDGRVVFDGPPAELTDAVLREI 242
|
...
gi 613390585 244 YGR 246
Cdd:COG3638 243 YGG 245
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
3-245 |
8.08e-149 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 415.16 E-value: 8.08e-149
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 3 QIEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMRRN 82
Cdd:TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIFQHFNLVKRSSVLRNVLSGRVGYHPTWKMVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARAL 162
Cdd:TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 163 CQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASEATDDVFSK 242
Cdd:TIGR02315 161 AQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELDDEVLRH 240
|
...
gi 613390585 243 IYG 245
Cdd:TIGR02315 241 IYG 243
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
4-244 |
5.13e-137 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 385.00 E-value: 5.13e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMRRNI 83
Cdd:cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNVLSGRVGYHPTWKMVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALC 163
Cdd:cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 164 QESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASEATDDVFSKI 243
Cdd:cd03256 161 QQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTDEVLDEI 240
|
.
gi 613390585 244 Y 244
Cdd:cd03256 241 Y 241
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
4-234 |
3.63e-75 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 228.34 E-value: 3.63e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITkAHGKALLEMRRNI 83
Cdd:COG1126 2 IEIENLHKSFGDLEV-LKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLT-DSKKDINKLRRKV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNVLSGrvgyhPTWkmVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALC 163
Cdd:COG1126 80 GMVFQQFNLFPHLTVLENVTLA-----PIK--VKKMSKAEAEERAMELLERVGLADKADAYPAQLSGGQQQRVAIARALA 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 613390585 164 QESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE 234
Cdd:COG1126 153 MEPKVMLFDEPTSALDPELVGEVLDVMRDLAKE-GMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPPEE 222
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
4-226 |
5.96e-75 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 226.99 E-value: 5.96e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVG---LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMR 80
Cdd:cd03255 1 IELKNLSKTYGGGGEKvqaLKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 81 R-NIGMIFQHFNLVKRSSVLRNVLSGrvgyhptwKMVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIA 159
Cdd:cd03255 81 RrHIGFVFQSFNLLPDLTALENVELP--------LLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIA 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 613390585 160 RALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAkEYGTRIIGLRDGEV 226
Cdd:cd03255 153 RALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELA-EYADRIIELRDGKI 218
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
4-234 |
1.18e-73 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 223.78 E-value: 1.18e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMRRNI 83
Cdd:COG2884 2 IRFENVSKRYPGGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREIPYLRRRI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNV---LsgrvgyhptwkMVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIAR 160
Cdd:COG2884 82 GVVFQDFRLLPDRTVYENValpL-----------RVTGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIAR 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 613390585 161 ALCQESEIILADEPVASLDPLTTKQVMDDLRKINQeLGITILI---NLHFVDlakEYGTRIIGLRDGEVVYDGPASE 234
Cdd:COG2884 151 ALVNRPELLLADEPTGNLDPETSWEIMELLEEINR-RGTTVLIathDLELVD---RMPKRVLELEDGRLVRDEARGV 223
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
4-229 |
2.94e-73 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 223.00 E-value: 2.94e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVG---LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMR 80
Cdd:COG1136 5 LELRNLTKSYGTGEGEvtaLRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSERELARLR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 81 R-NIGMIFQHFNLVKRSSVLRNVLsgrvgyhptwkMVL---GLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRI 156
Cdd:COG1136 85 RrHIGFVFQFFNLLPELTALENVA-----------LPLllaGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRV 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 613390585 157 SIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAkEYGTRIIGLRDGEVVYD 229
Cdd:COG1136 154 AIARALVNRPKLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDPELA-ARADRVIRLRDGRIVSD 225
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
4-242 |
1.02e-72 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 225.34 E-value: 1.02e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNG---HVGLKNINLNIEKGE-FAVIvGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEM 79
Cdd:COG1135 2 IELENLSKTFPTKggpVTALDDVSLTIEKGEiFGII-GYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSERELRAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 80 RRNIGMIFQHFNLVKRSSVLRNV-----LSGrvgyhptwkmvlglFPKED-KIKAMDALERVNILDKYNQRSDELSGGQQ 153
Cdd:COG1135 81 RRKIGMIFQHFNLLSSRTVAENValpleIAG--------------VPKAEiRKRVAELLELVGLSDKADAYPSQLSGGQK 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 154 QRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPas 233
Cdd:COG1135 147 QRVGIARALANNPKVLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVLENGRIVEQGP-- 224
|
....*....
gi 613390585 234 eaTDDVFSK 242
Cdd:COG1135 225 --VLDVFAN 231
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
4-226 |
4.22e-71 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 217.01 E-value: 4.22e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKaHGKALLEMRRNI 83
Cdd:cd03262 1 IEIKNLHKSFGDFHV-LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTD-DKKNINELRQKV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNVLSGrvgyhPTWkmVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALC 163
Cdd:cd03262 79 GMVFQQFNLFPHLTVLENITLA-----PIK--VKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 613390585 164 QESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGEV 226
Cdd:cd03262 152 MNPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
4-245 |
1.77e-69 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 214.14 E-value: 1.77e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKallEMRRNI 83
Cdd:COG1120 2 LEAENLSVGYGGRPV-LDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRR---ELARRI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNVLSGRVGYHPTWkmvlGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALC 163
Cdd:COG1120 78 AYVPQEPPAPFGLTVRELVALGRYPHLGLF----GRPSAEDREAVEEALERTGLEHLADRPVDELSGGERQRVLIARALA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 164 QESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASEA-TDDVFSK 242
Cdd:COG1120 154 QEPPLLLLDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEVlTPELLEE 233
|
...
gi 613390585 243 IYG 245
Cdd:COG1120 234 VYG 236
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
4-234 |
2.56e-68 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 210.52 E-value: 2.56e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGH---VGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMR 80
Cdd:cd03258 2 IELKNVSKVFGDTGgkvTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 81 RNIGMIFQHFNLVKRSSVLRNVLsgrvgyHPTwkMVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIAR 160
Cdd:cd03258 82 RRIGMIFQHFNLLSSRTVFENVA------LPL--EIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIAR 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 613390585 161 ALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE 234
Cdd:cd03258 154 ALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEE 227
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
4-253 |
4.59e-67 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 208.71 E-value: 4.59e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYpNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRL--HDITSG-EIFIQGKSITKAhGKALLEMR 80
Cdd:PRK09984 5 IRVEKLAKTF-NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLitGDKSAGsHIELLGRTVQRE-GRLARDIR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 81 RN---IGMIFQHFNLVKRSSVLRNVLSGRVGYHPTWKMVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRIS 157
Cdd:PRK09984 83 KSranTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 158 IARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASEATD 237
Cdd:PRK09984 163 IARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDN 242
|
250
....*....|....*.
gi 613390585 238 DVFSKIYgRTIKEDEK 253
Cdd:PRK09984 243 ERFDHLY-RSINRVEE 257
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
4-242 |
4.39e-64 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 203.49 E-value: 4.39e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNG---HVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMR 80
Cdd:PRK11153 2 IELKNISKVFPQGgrtIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 81 RNIGMIFQHFNLVKRSSVLRNV-----LSGRvgyhptwkmvlglfPKEDkIKAMDA--LERVNILDKYNQRSDELSGGQQ 153
Cdd:PRK11153 82 RQIGMIFQHFNLLSSRTVFDNValpleLAGT--------------PKAE-IKARVTelLELVGLSDKADRYPAQLSGGQK 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 154 QRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPAS 233
Cdd:PRK11153 147 QRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVS 226
|
....*....
gi 613390585 234 eatdDVFSK 242
Cdd:PRK11153 227 ----EVFSH 231
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
4-241 |
8.98e-64 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 207.45 E-value: 8.98e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVG----LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEM 79
Cdd:COG1123 261 LEVRNLSKRYPVRGKGgvraVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRRSLREL 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 80 RRNIGMIFQH----FNlvKRSSVLRNVLSGRvgyhptwkMVLGLFPKED-KIKAMDALERVNILDKYNQRS-DELSGGQQ 153
Cdd:COG1123 341 RRRVQMVFQDpyssLN--PRMTVGDIIAEPL--------RLHGLLSRAErRERVAELLERVGLPPDLADRYpHELSGGQR 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 154 QRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPas 233
Cdd:COG1123 411 QRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGP-- 488
|
....*...
gi 613390585 234 eaTDDVFS 241
Cdd:COG1123 489 --TEEVFA 494
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
4-235 |
4.86e-63 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 197.17 E-value: 4.86e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKahgKALLEMRRNI 83
Cdd:COG1122 1 IELENLSFSYPGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITK---KNLRELRRKV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQH-----FNlvkrSSV-------LRNvlsgrvgyhptwkmvLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGG 151
Cdd:COG1122 78 GLVFQNpddqlFA----PTVeedvafgPEN---------------LGLPREEIRERVEEALELVGLEHLADRPPHELSGG 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 152 QQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGP 231
Cdd:COG1122 139 QKQRVAIAGVLAMEPEVLVLDEPTAGLDPRGRRELLELLKRLNKE-GKTVIIVTHDLDLVAELADRVIVLDDGRIVADGT 217
|
....
gi 613390585 232 ASEA 235
Cdd:COG1122 218 PREV 221
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
4-226 |
7.73e-62 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 193.39 E-value: 7.73e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMRRNI 83
Cdd:cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNV-LSGRVGYHPtwkmvlglfPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARAL 162
Cdd:cd03292 81 GVVFQDFRLLPDRNVYENVaFALEVTGVP---------PREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAI 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 613390585 163 CQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGEV 226
Cdd:cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKA-GTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-252 |
3.23e-61 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 193.00 E-value: 3.23e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSQIEFKNVSKVYpNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAhgkallemR 80
Cdd:COG1121 4 MPAIELENLTVSY-GGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRA--------R 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 81 RNIGMIFQHFNLVKR--SSVLRNVLSGRVGYHPTWKmvlgLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISI 158
Cdd:COG1121 75 RRIGYVPQRAEVDWDfpITVRDVVLMGRYGRRGLFR----RPSRADREAVDEALERVGLEDLADRPIGELSGGQQQRVLL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 159 ARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLrDGEVVYDGPASEA-TD 237
Cdd:COG1121 151 ARALAQDPDLLLLDEPFAGVDAATEEALYELLRELRRE-GKTILVVTHDLGAVREYFDRVLLL-NRGLVAHGPPEEVlTP 228
|
250
....*....|....*
gi 613390585 238 DVFSKIYGRTIKEDE 252
Cdd:COG1121 229 ENLSRAYGGPVALLA 243
|
|
| ProV |
COG4175 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
1-227 |
4.45e-61 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443334 [Multi-domain] Cd Length: 389 Bit Score: 196.86 E-value: 4.45e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSQIEFKNVSKVY-PN---------------------GH-VGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDIT 57
Cdd:COG4175 1 MPKIEVRNLYKIFgKRperalklldqgkskdeilektGQtVGVNDASFDVEEGEIFVIMGLSGSGKSTLVRCLNRLIEPT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 58 SGEIFIQGKSITKAHGKALLEMRRN-IGMIFQHFNLVKRSSVLRNVlsgrvGYhptwkmvlGL----FPKEDKI-KAMDA 131
Cdd:COG4175 81 AGEVLIDGEDITKLSKKELRELRRKkMSMVFQHFALLPHRTVLENV-----AF--------GLeiqgVPKAERReRAREA 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 132 LERVNiLDKY-NQRSDELSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILinlhFV-- 208
Cdd:COG4175 148 LELVG-LAGWeDSYPDELSGGMQQRVGLARALATDPDILLMDEAFSALDPLIRREMQDELLELQAKLKKTIV----FIth 222
|
250 260
....*....|....*....|.
gi 613390585 209 DL--AKEYGTRIIGLRDGEVV 227
Cdd:COG4175 223 DLdeALRLGDRIAIMKDGRIV 243
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
4-238 |
7.72e-60 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 189.03 E-value: 7.72e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYpNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMRRNI 83
Cdd:COG1127 6 IEVRNLTKSF-GDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKELYELRRRI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQH---FNlvkrS-SVLRNVLsgrvgyhptwkmvlglFP-------KEDKIK--AMDALERVNILDKYNQRSDELSG 150
Cdd:COG1127 85 GMLFQGgalFD----SlTVFENVA----------------FPlrehtdlSEAEIRelVLEKLELVGLPGAADKMPSELSG 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 151 GQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDG 230
Cdd:COG1127 145 GMRKRVALARALALDPEILLYDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEG 224
|
250
....*....|
gi 613390585 231 PASE--ATDD 238
Cdd:COG1127 225 TPEEllASDD 234
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
18-227 |
1.89e-59 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 189.39 E-value: 1.89e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 18 VGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMRRN-IGMIFQHFNLVKRS 96
Cdd:cd03294 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKkISMVFQSFALLPHR 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 97 SVLRNVLSGRvgyhptwkMVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILADEPVA 176
Cdd:cd03294 118 TVLENVAFGL--------EVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFS 189
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 613390585 177 SLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVV 227
Cdd:cd03294 190 ALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLV 240
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
4-239 |
2.10e-59 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 188.28 E-value: 2.10e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGkalLEMRRNI 83
Cdd:cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDP---VELRRKI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNVlsgrvgyhptwkmvlGLFPK-----EDKIK--AMDALERVNiLD--KYNQR-SDELSGGQQ 153
Cdd:cd03295 78 GYVIQQIGLFPHMTVEENI---------------ALVPKllkwpKEKIRerADELLALVG-LDpaEFADRyPHELSGGQQ 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 154 QRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVV-YDGP- 231
Cdd:cd03295 142 QRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVqVGTPd 221
|
250
....*....|.
gi 613390585 232 ---ASEATDDV 239
Cdd:cd03295 222 eilRSPANDFV 232
|
|
| OpuBA |
COG1125 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
4-232 |
1.26e-58 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440742 [Multi-domain] Cd Length: 306 Bit Score: 188.38 E-value: 1.26e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKahgKALLEMRRNI 83
Cdd:COG1125 2 IEFENVTKRYPDGTVAVDDLSLTIPAGEFTVLVGPSGCGKTTTLRMINRLIEPTSGRILIDGEDIRD---LDPVELRRRI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNV-----LSGrvgyhptWKmvlglfpkEDKIK--AMDALERVNI-----LDKYnqrSDELSGG 151
Cdd:COG1125 79 GYVIQQIGLFPHMTVAENIatvprLLG-------WD--------KERIRarVDELLELVGLdpeeyRDRY---PHELSGG 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 152 QQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVV-YDG 230
Cdd:COG1125 141 QQQRVGVARALAADPPILLMDEPFGALDPITREQLQDELLRLQRELGKTIVFVTHDIDEALKLGDRIAVMREGRIVqYDT 220
|
..
gi 613390585 231 PA 232
Cdd:COG1125 221 PE 222
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
1-233 |
1.65e-57 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 183.29 E-value: 1.65e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSqIEFKNVSKVYpNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSI---TKAHGKALL 77
Cdd:COG4161 1 MS-IQLKNINCFY-GSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHQFdfsQKPSEKAIR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 78 EMRRNIGMIFQHFNLVKRSSVLRNVLSGrvgyhPTWkmVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRIS 157
Cdd:COG4161 79 LLRQKVGMVFQQYNLWPHLTVMENLIEA-----PCK--VLGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVA 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 613390585 158 IARALCQESEIILADEPVASLDPLTTKQVMDDLRKInQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPAS 233
Cdd:COG4161 152 IARALMMEPQVLLFDEPTAALDPEITAQVVEIIREL-SQTGITQVIVTHEVEFARKVASQVVYMEKGRIIEQGDAS 226
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
4-230 |
2.83e-57 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 181.95 E-value: 2.83e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKahgkaLLEMRRNI 83
Cdd:cd03259 1 LELKGLSKTYGSVRA-LDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTG-----VPPERRNI 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNVLSGrvgyhptwkMVLGLFPKED-KIKAMDALERVNILDKYNQRSDELSGGQQQRISIARAL 162
Cdd:cd03259 75 GMVFQDYALFPHLTVAENIAFG---------LKLRGVPKAEiRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARAL 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 613390585 163 CQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDG 230
Cdd:cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
4-225 |
4.14e-57 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 180.08 E-value: 4.14e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYpNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKaHGKALLEMRRNI 83
Cdd:cd03229 1 LELKNVSKRY-GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTD-LEDELPPLRRRI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNVLSGrvgyhptwkmvlglfpkedkikamdalervnildkynqrsdeLSGGQQQRISIARALC 163
Cdd:cd03229 79 GMVFQDFALFPHLTVLENIALG------------------------------------------LSGGQQQRVALARALA 116
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 613390585 164 QESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGE 225
Cdd:cd03229 117 MDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
4-225 |
7.24e-57 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 180.91 E-value: 7.24e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMRRNI 83
Cdd:TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNV-LSGRVgyhptwkmvLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARAL 162
Cdd:TIGR02673 82 GVVFQDFRLLPDRTVYENVaLPLEV---------RGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAI 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 613390585 163 CQESEIILADEPVASLDPLTTKQVMDDLRKINQeLGITILINLHFVDLAKEYGTRIIGLRDGE 225
Cdd:TIGR02673 153 VNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
4-230 |
2.76e-56 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 179.62 E-value: 2.76e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNG---HVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMR 80
Cdd:cd03257 2 LEVKNLSVSFPTGggsVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 81 RNIGMIFQH--FNLVKRSSVLRNVLSGRVGYHPTWKmvlglfPKEDKIKAMDALERVNILDKY-NQRSDELSGGQQQRIS 157
Cdd:cd03257 82 KEIQMVFQDpmSSLNPRMTIGEQIAEPLRIHGKLSK------KEARKEAVLLLLVGVGLPEEVlNRYPHELSGGQRQRVA 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 613390585 158 IARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDG 230
Cdd:cd03257 156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
4-238 |
2.83e-56 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 180.29 E-value: 2.83e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKaLLEMRRNI 83
Cdd:PRK09493 2 IEFKNVSKHFGPTQV-LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVD-ERLIRQEA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNVLSGRVgyhptwkMVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALC 163
Cdd:PRK09493 80 GMVFQQFYLFPHLTALENVMFGPL-------RVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALA 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 613390585 164 QESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASEATDD 238
Cdd:PRK09493 153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-203 |
9.56e-55 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 176.82 E-value: 9.56e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSQ----IEFKNVSKVYP---NGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHg 73
Cdd:COG1116 1 MSAaapaLELRGVSKRFPtggGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGPG- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 74 kallemrRNIGMIFQHFNLVKRSSVLRNVLSGRvgyhptwKMVlGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQ 153
Cdd:COG1116 80 -------PDRGVVFQEPALLPWLTVLDNVALGL-------ELR-GVPKAERRERARELLELVGLAGFEDAYPHQLSGGMR 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 613390585 154 QRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILI 203
Cdd:COG1116 145 QRVAIARALANDPEVLLMDEPFGALDALTRERLQDELLRLWQETGKTVLF 194
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
1-233 |
2.44e-54 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 175.20 E-value: 2.44e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSqIEFKNVSKVYPNgHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSI---TKAHGKALL 77
Cdd:PRK11124 1 MS-IQLNGINCFYGA-HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFdfsKTPSDKAIR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 78 EMRRNIGMIFQHFNLVKRSSVLRNVLSGRVgyhptwkMVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRIS 157
Cdd:PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPC-------RVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVA 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 613390585 158 IARALCQESEIILADEPVASLDPLTTKQVMDDLRKInQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPAS 233
Cdd:PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIREL-AETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
5-230 |
3.76e-54 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 173.87 E-value: 3.76e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 5 EFKNVSKVYpNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKahgkalleMRRNIG 84
Cdd:cd03235 1 EVEDLTVSY-GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEK--------ERKRIG 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 85 MIFQHFNLVKRS--SVLRNVLSGRVGyHPTWkmvLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARAL 162
Cdd:cd03235 72 YVPQRRSIDRDFpiSVRDVVLMGLYG-HKGL---FRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARAL 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 613390585 163 CQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLrDGEVVYDG 230
Cdd:cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRRE-GMTILVVTHDLGLVLEYFDRVLLL-NRTVVASG 213
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
5-225 |
8.52e-54 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 172.65 E-value: 8.52e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 5 EFKNVSKVYPNG-HVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKahgKALLEMRRNI 83
Cdd:cd03225 1 ELKNLSFSYPDGaRPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTK---LSLKELRRKV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQH-----FNLVKRSSV---LRNvlsgrvgyhptwkmvLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQR 155
Cdd:cd03225 78 GLVFQNpddqfFGPTVEEEVafgLEN---------------LGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQR 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 156 ISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGE 225
Cdd:cd03225 143 VAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
4-249 |
9.13e-54 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 173.71 E-value: 9.13e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYpNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKAllemRRNI 83
Cdd:COG1131 1 IEVRGLTKRY-GDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEV----RRRI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNVlsgrvgyhptwKMVLGLFP---KEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIAR 160
Cdd:COG1131 76 GYVPQEPALYPDLTVRENL-----------RFFARLYGlprKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLAL 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 161 ALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASEAT---- 236
Cdd:COG1131 145 ALLHDPELLILDEPTSGLDPEARRELWELLRELAAE-GKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKarll 223
|
250
....*....|...
gi 613390585 237 DDVFSKIYGRTIK 249
Cdd:COG1131 224 EDVFLELTGEEAR 236
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-234 |
7.77e-53 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 174.90 E-value: 7.77e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSQIEFKNVSKVYpNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITK--AHgkalle 78
Cdd:COG3842 3 MPALELENVSKRY-GDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGlpPE------ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 79 mRRNIGMIFQHFNLVKRSSVLRNVlsgrvGYhptwkmvlGL----FPKED-KIKAMDALERVNILDKYNQRSDELSGGQQ 153
Cdd:COG3842 76 -KRNVGMVFQDYALFPHLTVAENV-----AF--------GLrmrgVPKAEiRARVAELLELVGLEGLADRYPHQLSGGQQ 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 154 QRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILinlhFV--DL--AKEYGTRIIGLRDGEV--- 226
Cdd:COG3842 142 QRVALARALAPEPRVLLLDEPLSALDAKLREEMREELRRLQRELGITFI----YVthDQeeALALADRIAVMNDGRIeqv 217
|
250
....*....|...
gi 613390585 227 -----VYDGPASE 234
Cdd:COG3842 218 gtpeeIYERPATR 230
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
4-238 |
8.21e-52 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 168.45 E-value: 8.21e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMRRNI 83
Cdd:cd03261 1 IELRGLTKSFGGRTV-LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNV---LsgrvgyhptwKMVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIAR 160
Cdd:cd03261 80 GMLFQSGALFDSLTVFENVafpL----------REHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALAR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 161 ALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE--ATDD 238
Cdd:cd03261 150 ALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEElrASDD 229
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
4-241 |
2.17e-51 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 174.71 E-value: 2.17e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHV-GLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDIT---SGEIFIQGKSITKAHGKallEM 79
Cdd:COG1123 5 LEVRDLSVRYPGGDVpAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLELSEA---LR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 80 RRNIGMIFQH----FNLVkrssvlrnvlsgRVGYHPTWKMVLGLFPKED-KIKAMDALERVNILDKYNQRSDELSGGQQQ 154
Cdd:COG1123 82 GRRIGMVFQDpmtqLNPV------------TVGDQIAEALENLGLSRAEaRARVLELLEAVGLERRLDRYPHQLSGGQRQ 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 155 RISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPase 234
Cdd:COG1123 150 RVAIAMALALDPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGP--- 226
|
....*..
gi 613390585 235 aTDDVFS 241
Cdd:COG1123 227 -PEEILA 232
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1-233 |
4.13e-51 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 170.25 E-value: 4.13e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSQIEFKNVSKVYpNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKallemR 80
Cdd:COG3839 1 MASLELENVSKSY-GGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLPPK-----D 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 81 RNIGMIFQHFNLVKRSSVLRNvlsgrvgyhptwkMVLGL----FPKED-KIKAMDALERVNILDKYNQRSDELSGGQQQR 155
Cdd:COG3839 75 RNIAMVFQSYALYPHMTVYEN-------------IAFPLklrkVPKAEiDRRVREAAELLGLEDLLDRKPKQLSGGQRQR 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 156 ISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHfvD------LAkeygTRIIGLRDGEV--- 226
Cdd:COG3839 142 VALGRALVREPKVFLLDEPLSNLDAKLRVEMRAEIKRLHRRLGTTTIYVTH--DqveamtLA----DRIAVMNDGRIqqv 215
|
250
....*....|..
gi 613390585 227 -----VYDGPAS 233
Cdd:COG3839 216 gtpeeLYDRPAN 227
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
4-234 |
2.22e-50 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 164.66 E-value: 2.22e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDI-----TSGEIFIQGKSItKAHGKALLE 78
Cdd:cd03260 1 IELRDLNVYYGDKHA-LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLipgapDEGEVLLDGKDI-YDLDVDVLE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 79 MRRNIGMIFQHFNLVkRSSVLRNVLSG-RV-GYHPTwkmvlglfpKEDKIKAMDALERVNILDKYNQRSD--ELSGGQQQ 154
Cdd:cd03260 79 LRRRVGMVFQKPNPF-PGSIYDNVAYGlRLhGIKLK---------EELDERVEEALRKAALWDEVKDRLHalGLSGGQQQ 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 155 RISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElgITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE 234
Cdd:cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
5-230 |
2.94e-50 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 162.60 E-value: 2.94e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 5 EFKNVSKVYPNGHVgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKallEMRRNIG 84
Cdd:cd03214 1 EVENLSVGYGGRTV-LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK---ELARKIA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 85 MIFQhfnlvkrssvlrnvlsgrvgyhptwkmvlglfpkedkikamdALERVNILDKYNQRSDELSGGQQQRISIARALCQ 164
Cdd:cd03214 77 YVPQ------------------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQ 114
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 613390585 165 ESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDG 230
Cdd:cd03214 115 EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
4-227 |
8.40e-50 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 163.03 E-value: 8.40e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNG---HVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHgkallemr 80
Cdd:cd03293 1 LEVRNVSKTYGGGggaVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPG-------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 81 RNIGMIFQHFNLVKRSSVLRNVLSGRvgyhptwKMVlGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIAR 160
Cdd:cd03293 73 PDRGYVFQQDALLPWLTVLDNVALGL-------ELQ-GVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALAR 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 613390585 161 ALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGL--RDGEVV 227
Cdd:cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLsaRPGRIV 213
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
4-247 |
1.23e-49 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 163.44 E-value: 1.23e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVG---LKNINLNIEKGE-FAvIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKAlleM 79
Cdd:COG1124 2 LEVRNLSVSYGQGGRRvpvLKDVSLEVAPGEsFG-LVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRRKA---F 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 80 RRNIGMIFQHfnlvKRSSVlrnvlsgrvgyHPTWKM---------VLGLFPKEDKIKAMdaLERVNI----LDKYnqrSD 146
Cdd:COG1124 78 RRRVQMVFQD----PYASL-----------HPRHTVdrilaeplrIHGLPDREERIAEL--LEQVGLppsfLDRY---PH 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 147 ELSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEV 226
Cdd:COG1124 138 QLSGGQRQRVAIARALILEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRI 217
|
250 260
....*....|....*....|.
gi 613390585 227 VYDGPASEATDDvFSKIYGRT 247
Cdd:COG1124 218 VEELTVADLLAG-PKHPYTRE 237
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
4-243 |
1.98e-49 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 163.78 E-value: 1.98e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVY----PNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEM 79
Cdd:TIGR04521 1 IKLKNVSYIYqpgtPFEKKALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRDITAKKKKKLKDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 80 RRNIGMIFQH-----FNLvkrsSVLRNVLSGrvgyhPtwkMVLGLFPKEDKIKAMDALERVNILDKYNQRSD-ELSGGQQ 153
Cdd:TIGR04521 81 RKKVGLVFQFpehqlFEE----TVYKDIAFG-----P---KNLGLSEEEAEERVKEALELVGLDEEYLERSPfELSGGQM 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 154 QRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPAS 233
Cdd:TIGR04521 149 RRVAIAGVLAMEPEVLILDEPTAGLDPKGRKEILDLFKRLHKEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDGTPR 228
|
250
....*....|
gi 613390585 234 EatddVFSKI 243
Cdd:TIGR04521 229 E----VFSDV 234
|
|
| ABC_MetN |
TIGR02314 |
D-methionine ABC transporter, ATP-binding protein; Members of this family are the ATP-binding ... |
4-234 |
2.35e-49 |
|
D-methionine ABC transporter, ATP-binding protein; Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Pssm-ID: 131367 [Multi-domain] Cd Length: 343 Bit Score: 165.44 E-value: 2.35e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGH---VGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMR 80
Cdd:TIGR02314 2 IKLSNITKVFHQGTktiQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 81 RNIGMIFQHFNLVKRSSVLRNVlsgrvgyhpTWKMVLGLFPKED-KIKAMDALERVNILDKYNQRSDELSGGQQQRISIA 159
Cdd:TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNV---------ALPLELDNTPKDEiKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIA 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 613390585 160 RALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE 234
Cdd:TIGR02314 153 RALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSE 227
|
|
| proV |
TIGR01186 |
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine ... |
16-234 |
7.66e-49 |
|
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130254 [Multi-domain] Cd Length: 363 Bit Score: 164.64 E-value: 7.66e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 16 GHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMRR-NIGMIFQHFNLVK 94
Cdd:TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRkKIGMVFQQFALFP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 95 RSSVLRNVLSGrvgyhptwKMVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILADEP 174
Cdd:TIGR01186 85 HMTILQNTSLG--------PELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEA 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 175 VASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE 234
Cdd:TIGR01186 157 FSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDE 216
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
4-237 |
9.35e-47 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 155.30 E-value: 9.35e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHvglKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAH-GKallemrRN 82
Cdd:COG3840 2 LRLDDLTYRYGDFP---LRFDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPpAE------RP 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIFQHFNLVKRSSVLRNVLsgrvgyhptwkmvLGLFPK-----EDKIKAMDALERVNILDKYNQRSDELSGGQQQRIS 157
Cdd:COG3840 73 VSMLFQENNLFPHLTVAQNIG-------------LGLRPGlkltaEQRAQVEQALERVGLAGLLDRLPGQLSGGQRQRVA 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 158 IARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASEATD 237
Cdd:COG3840 140 LARCLVRKRPILLLDEPFSALDPALRQEMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLD 219
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
4-245 |
1.10e-46 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 156.01 E-value: 1.10e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYpNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALlemrrni 83
Cdd:COG4604 2 IEIKNVSKRY-GGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSREL------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 gmifqhfnlVKRSSVLR--NVLSGR------VGYhptwkmvlGLFP-------KEDKIKAMDALERVNILDKYNQRSDEL 148
Cdd:COG4604 74 ---------AKRLAILRqeNHINSRltvrelVAF--------GRFPyskgrltAEDREIIDEAIAYLDLEDLADRYLDEL 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 149 SGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVY 228
Cdd:COG4604 137 SGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQMMKLLRRLADELGKTVVIVLHDINFASCYADHIVAMKDGRVVA 216
|
250
....*....|....*...
gi 613390585 229 DGPASE-ATDDVFSKIYG 245
Cdd:COG4604 217 QGTPEEiITPEVLSDIYD 234
|
|
| L_ocin_972_ABC |
TIGR03608 |
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly ... |
7-221 |
2.59e-46 |
|
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 188353 [Multi-domain] Cd Length: 206 Bit Score: 153.54 E-value: 2.59e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 7 KNVSKVYpNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMRRN-IGM 85
Cdd:TIGR03608 2 KNISKKF-GDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASKFRREkLGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 86 IFQHFNLVKRSSVLRNVLSGrvgyhptwkMVLGLFPKEDKIKAM-DALERVNILDKYNQRSDELSGGQQQRISIARALCQ 164
Cdd:TIGR03608 81 LFQNFALIENETVEENLDLG---------LKYKKLSKKEKREKKkEALEKVGLNLKLKQKIYELSGGEQQRVALARAILK 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 613390585 165 ESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEyGTRIIGL 221
Cdd:TIGR03608 152 PPPLILADEPTGSLDPKNRDEVLDLLLELNDE-GKTIIIVTHDPEVAKQ-ADRVIEL 206
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
4-233 |
2.68e-46 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 154.32 E-value: 2.68e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYpNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKahgkaLLEMRRNI 83
Cdd:cd03300 1 IELENVSKFY-GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITN-----LPPHKRPV 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNVLSGrvgyhptWKMvLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALC 163
Cdd:cd03300 75 NTVFQNYALFPHLTVFENIAFG-------LRL-KKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALV 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 613390585 164 QESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEV--------VYDGPAS 233
Cdd:cd03300 147 NEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIqqigtpeeIYEEPAN 224
|
|
| 3a0107s01c2 |
TIGR00972 |
phosphate ABC transporter, ATP-binding protein; This model represents the ATP-binding protein ... |
4-242 |
1.62e-45 |
|
phosphate ABC transporter, ATP-binding protein; This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. [Transport and binding proteins, Anions]
Pssm-ID: 273372 [Multi-domain] Cd Length: 247 Bit Score: 152.83 E-value: 1.62e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDIT-----SGEIFIQGKSITkAHGKALLE 78
Cdd:TIGR00972 2 IEIENLNLFYGEKEA-LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVpgvriEGKVLFDGQDIY-DKKIDVVE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 79 MRRNIGMIFQHFNLVKRSsVLRNVLSGrvgyhptwkmvLGLFPKEDKiKAMD-----ALERVNILDKYNQRSDE----LS 149
Cdd:TIGR00972 80 LRRRVGMVFQKPNPFPMS-IYDNIAYG-----------PRLHGIKDK-KELDeiveeSLKKAALWDEVKDRLHDsalgLS 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 150 GGQQQRISIARALCQESEIILADEPVASLDPLTTKQV---MDDLRKinqelGITILINLHFVDLAKEYGTRIIGLRDGEV 226
Cdd:TIGR00972 147 GGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIeelIQELKK-----KYTIVIVTHNMQQAARISDRTAFFYDGEL 221
|
250
....*....|....*.
gi 613390585 227 VYDGPaseaTDDVFSK 242
Cdd:TIGR00972 222 VEYGP----TEQIFTN 233
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
4-243 |
2.09e-45 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 153.31 E-value: 2.09e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSItKAHGKALLEMRRNI 83
Cdd:PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPI-KYDKKSLLEVRKTV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQH-FNLVKRSSVLRNVLSGrvgyhptwKMVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARAL 162
Cdd:PRK13639 81 GIVFQNpDDQLFAPTVEEDVAFG--------PLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGIL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 163 CQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASEatddVFSK 242
Cdd:PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKE----VFSD 227
|
.
gi 613390585 243 I 243
Cdd:PRK13639 228 I 228
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
4-241 |
4.25e-45 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 151.88 E-value: 4.25e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSI---TKAHG------- 73
Cdd:COG4598 9 LEVRDLHKSFGDLEV-LKGVSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRVGGEEIrlkPDRDGelvpadr 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 74 KALLEMRRNIGMIFQHFNLVKRSSVLRNVLSGRVgyHptwkmVLGLfPKEDKI-KAMDALERVNILDKYNQRSDELSGGQ 152
Cdd:COG4598 88 RQLQRIRTRLGMVFQSFNLWSHMTVLENVIEAPV--H-----VLGR-PKAEAIeRAEALLAKVGLADKRDAYPAHLSGGQ 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 153 QQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPA 232
Cdd:COG4598 160 QQRAAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMRDLAEE-GRTMLVVTHEMGFARDVSSHVVFLHQGRIEEQGPP 238
|
....*....
gi 613390585 233 seatDDVFS 241
Cdd:COG4598 239 ----AEVFG 243
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
4-226 |
9.12e-45 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 149.58 E-value: 9.12e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYpNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALlemRRNI 83
Cdd:COG4619 1 LELEGLSFRV-GGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPPPEW---RRQV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHfnlvkrsSVLrnvLSGRVGYH-PTWKMVLGLFPKEDKIKamDALERVN----ILDKynqRSDELSGGQQQRISI 158
Cdd:COG4619 77 AYVPQE-------PAL---WGGTVRDNlPFPFQLRERKFDRERAL--ELLERLGlppdILDK---PVERLSGGERQRLAL 141
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 613390585 159 ARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEV 226
Cdd:COG4619 142 IRALLLQPDVLLLDEPTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
4-243 |
1.02e-44 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 151.43 E-value: 1.02e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHV-GLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGksITKAHGKALLEMRRN 82
Cdd:TIGR04520 1 IEVENVSFSYPESEKpALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDG--LDTLDEENLWEIRKK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIFQhfN----LVkRSSV-------LRNvlsgrvgyhptwkmvLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGG 151
Cdd:TIGR04520 79 VGMVFQ--NpdnqFV-GATVeddvafgLEN---------------LGVPREEMRKRVDEALKLVGMEDFRDREPHLLSGG 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 152 QQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVD---LAKeygtRIIGLRDGEVVY 228
Cdd:TIGR04520 141 QKQRVAIAGVLAMRPDIIILDEATSMLDPKGRKEVLETIRKLNKEEGITVISITHDMEeavLAD----RVIVMNKGKIVA 216
|
250
....*....|....*
gi 613390585 229 DGPASEatddVFSKI 243
Cdd:TIGR04520 217 EGTPRE----IFSQV 227
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
4-235 |
2.49e-44 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 149.12 E-value: 2.49e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNG----HVgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEM 79
Cdd:COG4181 9 IELRGLTKTVGTGagelTI-LKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFALDEDARARL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 80 R-RNIGMIFQHFNLVKRSSVLRNV-----LSGRvgyhptwkmvlglfpKEDKIKAMDALERVNILDKYNQRSDELSGGQQ 153
Cdd:COG4181 88 RaRHVGFVFQSFQLLPTLTALENVmlpleLAGR---------------RDARARARALLERVGLGHRLDHYPAQLSGGEQ 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 154 QRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGtRIIGLRDGEVVYDGPAS 233
Cdd:COG4181 153 QRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDPALAARCD-RVLRLRAGRLVEDTAAT 231
|
..
gi 613390585 234 EA 235
Cdd:COG4181 232 AA 233
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
4-238 |
3.52e-44 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 148.35 E-value: 3.52e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKA--HGKAllemRR 81
Cdd:cd03224 1 LEVENLNAGYGKSQI-LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLppHERA----RA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 82 NIGMIFQHFNLVKRSSVLRNVLSG-----RVGYHPTWKMVLGLFPKedkikamdalervnILDKYNQRSDELSGGQQQRI 156
Cdd:cd03224 76 GIGYVPEGRRIFPELTVEENLLLGayarrRAKRKARLERVYELFPR--------------LKERRKQLAGTLSGGEQQML 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 157 SIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASEAT 236
Cdd:cd03224 142 AIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE-GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220
|
..
gi 613390585 237 DD 238
Cdd:cd03224 221 AD 222
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
4-234 |
4.43e-44 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 148.74 E-value: 4.43e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYpNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSIT--KAHGKAllemRR 81
Cdd:cd03219 1 LEVRGLTKRF-GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITglPPHEIA----RL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 82 NIGMIFQHFNLVKRSSVLRNVLSGRVGYHPTWKMVLGLFPKEDKI--KAMDALERVNILDKYNQRSDELSGGQQQRISIA 159
Cdd:cd03219 76 GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREAreRAEELLERVGLADLADRPAGELSYGQQRRLEIA 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 613390585 160 RALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE 234
Cdd:cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRER-GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDE 229
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
1-234 |
6.85e-44 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 148.74 E-value: 6.85e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSQIEFKNVSKVYpNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFI------QGKSITKAHGk 74
Cdd:PRK11264 1 MSAIEVKNLVKKF-HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVgditidTARSLSQQKG- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 75 ALLEMRRNIGMIFQHFNLVKRSSVLRNVLSGRVgyhptwkmVLGLFPKEDKI-KAMDALERVNILDKYNQRSDELSGGQQ 153
Cdd:PRK11264 79 LIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPV--------IVKGEPKEEATaRARELLAKVGLAGKETSYPRRLSGGQQ 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 154 QRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPAS 233
Cdd:PRK11264 151 QRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229
|
.
gi 613390585 234 E 234
Cdd:PRK11264 230 A 230
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
4-227 |
1.12e-43 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 147.02 E-value: 1.12e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNgHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKallemRRNI 83
Cdd:cd03301 1 VELENVTKRFGN-VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK-----DRDI 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNvlsgrvgyhptwkMVLGL----FPKED-KIKAMDALERVNILDKYNQRSDELSGGQQQRISI 158
Cdd:cd03301 75 AMVFQNYALYPHMTVYDN-------------IAFGLklrkVPKDEiDERVREVAELLQIEHLLDRKPKQLSGGQRQRVAL 141
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 613390585 159 ARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVV 227
Cdd:cd03301 142 GRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
4-241 |
1.43e-43 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 149.82 E-value: 1.43e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVGLK---NINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHD---ITSGEIFIQGKSITKAHGKALL 77
Cdd:COG0444 2 LEVRNLKVYFPTRRGVVKavdGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPppgITSGEILFDGEDLLKLSEKELR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 78 EMR-RNIGMIFQH----FNLVKR-SSVLRNVLsgrvgyhptwkMVLGLFPKEDKI-KAMDALERVNI------LDKYnqr 144
Cdd:COG0444 82 KIRgREIQMIFQDpmtsLNPVMTvGDQIAEPL-----------RIHGGLSKAEAReRAIELLERVGLpdperrLDRY--- 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 145 SDELSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILinlhFV--DLA--KEYGTRIIG 220
Cdd:COG0444 148 PHELSGGMRQRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRELGLAIL----FIthDLGvvAEIADRVAV 223
|
250 260
....*....|....*....|.
gi 613390585 221 LRDGEVVYDGPaseaTDDVFS 241
Cdd:COG0444 224 MYAGRIVEEGP----VEELFE 240
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
5-225 |
1.76e-43 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 144.69 E-value: 1.76e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 5 EFKNVSKVYPNGHVgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKahgKALLEMRRNIG 84
Cdd:cd00267 1 EIENLSFRYGGRTA-LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAK---LPLEELRRRIG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 85 MIFQhfnlvkrssvlrnvlsgrvgyhptwkmvlglfpkedkikamdalervnildkynqrsdeLSGGQQQRISIARALCQ 164
Cdd:cd00267 77 YVPQ-----------------------------------------------------------LSGGQRQRVALARALLL 97
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 613390585 165 ESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGE 225
Cdd:cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
1-234 |
4.88e-43 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 146.33 E-value: 4.88e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSqIEFKNVSKVYPNgHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKallemR 80
Cdd:cd03296 1 MS-IEVRNVSKRFGD-FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQ-----E 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 81 RNIGMIFQHFNLVKRSSVLRNVLSG-RVGYHPTWkmvlglfPKEDKIKA--MDALERVNiLDKYNQR-SDELSGGQQQRI 156
Cdd:cd03296 74 RNVGFVFQHYALFRHMTVFDNVAFGlRVKPRSER-------PPEAEIRAkvHELLKLVQ-LDWLADRyPAQLSGGQRQRV 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 157 SIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEV--------VY 228
Cdd:cd03296 146 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIeqvgtpdeVY 225
|
....*.
gi 613390585 229 DGPASE 234
Cdd:cd03296 226 DHPASP 231
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
5-238 |
2.70e-42 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 144.80 E-value: 2.70e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 5 EFKNVSKVYpNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSIT--KAHGKAllemRRN 82
Cdd:COG0411 6 EVRGLTKRF-GGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITglPPHRIA----RLG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIFQHFNLVKRSSVLRNVLSGRVGYHPT--WKMVLGLFP-----KEDKIKAMDALERVNILDKYNQRSDELSGGQQQR 155
Cdd:COG0411 81 IARTFQNPRLFPELTVLENVLVAAHARLGRglLAALLRLPRarreeREARERAEELLERVGLADRADEPAGNLSYGQQRR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 156 ISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILI---NLHFV-DLAkeygTRIIGLRDGEVVYDGP 231
Cdd:COG0411 161 LEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLiehDMDLVmGLA----DRIVVLDFGRVIAEGT 236
|
....*..
gi 613390585 232 ASEATDD 238
Cdd:COG0411 237 PAEVRAD 243
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
4-234 |
3.14e-42 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 144.23 E-value: 3.14e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYpNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITkahgKALLEMRRNI 83
Cdd:COG4555 2 IEVENLSKKY-GKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVR----KEPREARRQI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNVLsgrvgYHptwKMVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALC 163
Cdd:COG4555 77 GVLPDERGLYDRLTVRENIR-----YF---AELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALV 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 613390585 164 QESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE 234
Cdd:COG4555 149 HDPKVLLLDEPTNGLDVMARRLLREILRALKKE-GKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDE 218
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
4-225 |
4.17e-42 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 141.37 E-value: 4.17e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHV-GLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAhgkALLEMRRN 82
Cdd:cd03228 1 IEFKNVSFSYPGRPKpVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDL---DLESLRKN 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIFQHFNLVKRSsvLRNvlsgrvgyhptwkmvlglfpkedkikamdalervNIldkynqrsdeLSGGQQQRISIARAL 162
Cdd:cd03228 78 IAYVPQDPFLFSGT--IRE----------------------------------NI----------LSGGQRQRIAIARAL 111
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 613390585 163 CQESEIILADEPVASLDPLTTKQVMDDLRKINQelGITILI---NLHFVDLAkeygTRIIGLRDGE 225
Cdd:cd03228 112 LRDPPILILDEATSALDPETEALILEALRALAK--GKTVIViahRLSTIRDA----DRIIVLDDGR 171
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
4-234 |
9.99e-42 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 151.14 E-value: 9.99e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYP-NGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHgkaLLEMRRN 82
Cdd:COG2274 474 IELENVSFRYPgDSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQID---PASLRRQ 550
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIFQHFNLVKRsSVLRNVLSGRvgyhptwkmvlglfPKEDKIKAMDALERVNILD-------KYNQRSDE----LSGG 151
Cdd:COG2274 551 IGVVLQDVFLFSG-TIRENITLGD--------------PDATDEEIIEAARLAGLHDfiealpmGYDTVVGEggsnLSGG 615
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 152 QQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQelGITILI---NLHFVDLAkeygTRIIGLRDGEVVY 228
Cdd:COG2274 616 QRQRLAIARALLRNPRILILDEATSALDAETEAIILENLRRLLK--GRTVIIiahRLSTIRLA----DRIIVLDKGRIVE 689
|
....*.
gi 613390585 229 DGPASE 234
Cdd:COG2274 690 DGTHEE 695
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
4-249 |
1.30e-41 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 142.53 E-value: 1.30e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSkVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSG-EIFIQGKSITKAHgkaLLEMRRN 82
Cdd:COG1119 4 LELRNVT-VRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGnDVRLFGERRGGED---VWELRKR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMI--FQHFNLVKRSSVLRNVLSGRVGyhptwkmVLGLFPK---EDKIKAMDALERVNILDKYNQRSDELSGGQQQRIS 157
Cdd:COG1119 80 IGLVspALQLRFPRDETVLDVVLSGFFD-------SIGLYREptdEQRERARELLELLGLAHLADRPFGTLSQGEQRRVL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 158 IARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFV-DLAKEYgTRIIGLRDGEVVYDGPASEA- 235
Cdd:COG1119 153 IARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHHVeEIPPGI-THVLLLKDGRVVAAGPKEEVl 231
|
250
....*....|....
gi 613390585 236 TDDVFSKIYGRTIK 249
Cdd:COG1119 232 TSENLSEAFGLPVE 245
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
20-176 |
1.31e-41 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 139.71 E-value: 1.31e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALlemRRNIGMIFQHFNLVKRSSVL 99
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSL---RKEIGYVFQDPQLFPRLTVR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 100 RNVLSGRVGYhptwkmvlGLFPKEDKIKAMDALERVNILDKYNQRSD----ELSGGQQQRISIARALCQESEIILADEPV 175
Cdd:pfam00005 78 ENLRLGLLLK--------GLSKREKDARAEEALEKLGLGDLADRPVGerpgTLSGGQRQRVAIARALLTKPKLLLLDEPT 149
|
.
gi 613390585 176 A 176
Cdd:pfam00005 150 A 150
|
|
| ABC_ATP_DarD |
NF038007 |
darobactin export ABC transporter ATP-binding protein; |
20-224 |
2.91e-41 |
|
darobactin export ABC transporter ATP-binding protein;
Pssm-ID: 411600 [Multi-domain] Cd Length: 218 Bit Score: 141.01 E-value: 2.91e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMRRN-IGMIFQHFNLVKRSSV 98
Cdd:NF038007 21 LNHLNFSVEKGDFVSIMGPSGSGKSTLLNIIGMFDSLDSGSLTLAGKEVTNLSYSQKIILRRElIGYIFQSFNLIPHLSI 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 99 LRNV---LSGRvgyhptwkmvlGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILADEPV 175
Cdd:NF038007 101 FDNValpLKYR-----------GVAKKERIERVNQVLNLFGIDNRRNHKPMQLSGGQQQRVAIARAMVSNPALLLADEPT 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 613390585 176 ASLDPLTTKQVMDDLRKINQElGITILINLHFVDlAKEYGTRIIGLRDG 224
Cdd:NF038007 170 GNLDSKNARAVLQQLKYINQK-GTTIIMVTHSDE-ASTYGNRIINMKDG 216
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
4-246 |
7.69e-41 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 147.61 E-value: 7.69e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVG-LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALlemRRN 82
Cdd:COG4987 334 LELEDVSFRYPGAGRPvLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDDL---RRR 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIFQH---FNlvkrSSVLRNVLSGRvgyhptwkmvlglfPKEDKIKAMDALERVNILD-------KYNQRSDE----L 148
Cdd:COG4987 411 IAVVPQRphlFD----TTLRENLRLAR--------------PDATDEELWAALERVGLGDwlaalpdGLDTWLGEggrrL 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 149 SGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLakEYGTRIIGLRDGEVVY 228
Cdd:COG4987 473 SGGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALAG-RTVLLITHRLAGL--ERMDRILVLEDGRIVE 549
|
250 260
....*....|....*....|
gi 613390585 229 DGPASE--ATDDVFSKIYGR 246
Cdd:COG4987 550 QGTHEEllAQNGRYRQLYQR 569
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
4-192 |
1.03e-40 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 140.56 E-value: 1.03e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSkVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDI-----TSGEIFIQGKSITkAHGKALLE 78
Cdd:COG1117 12 IEVRNLN-VYYGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRMNDLipgarVEGEILLDGEDIY-DPDVDVVE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 79 MRRNIGMIFQHFN-LVKrsSVLRNVLSG-RV-GYHPTWKMvlglfpkeDKIkAMDALERVNIL----DKYNQRSDELSGG 151
Cdd:COG1117 90 LRRRVGMVFQKPNpFPK--SIYDNVAYGlRLhGIKSKSEL--------DEI-VEESLRKAALWdevkDRLKKSALGLSGG 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 613390585 152 QQQRISIARALCQESEIILADEPVASLDPLTTKQV---MDDLRK 192
Cdd:COG1117 159 QQQRLCIARALAVEPEVLLMDEPTSALDPISTAKIeelILELKK 202
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
4-232 |
4.15e-40 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 146.41 E-value: 4.15e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGH---VGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMR 80
Cdd:PRK10535 5 LELKDIRRSYPSGEeqvEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 81 R-NIGMIFQHFNLVKRSSVLRNVLSGRVgyhptwkmVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIA 159
Cdd:PRK10535 85 ReHFGFIFQRYHLLSHLTAAQNVEVPAV--------YAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 613390585 160 RALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEyGTRIIGLRDGEVVYDGPA 232
Cdd:PRK10535 157 RALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDR-GHTVIIVTHDPQVAAQ-AERVIEIRDGEIVRNPPA 227
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
4-226 |
9.73e-40 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 135.60 E-value: 9.73e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKAllemRRNI 83
Cdd:cd03230 1 IEVRNLSKRYGKKTA-LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEV----KRRI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNVlsgrvgyhptwkmvlglfpkedkikamdalervnildkynqrsdELSGGQQQRISIARALC 163
Cdd:cd03230 76 GYLPEEPSLYENLTVRENL--------------------------------------------KLSGGMKQRLALAQALL 111
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 613390585 164 QESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGEV 226
Cdd:cd03230 112 HDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
4-234 |
1.82e-39 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 138.06 E-value: 1.82e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHgKALLEMRRNI 83
Cdd:PRK13636 6 LKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSR-KGLMKLRESV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQH-FNLVKRSSVLRNVLSGrvgyhptwKMVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARAL 162
Cdd:PRK13636 85 GMVFQDpDNQLFSASVYQDVSFG--------AVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 613390585 163 CQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE 234
Cdd:PRK13636 157 VMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKE 228
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
21-245 |
2.48e-39 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 137.43 E-value: 2.48e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 21 KNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKallEMRRNIGMIFQHFNLVKRSSVLR 100
Cdd:PRK10253 24 ENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASK---EVARRIGLLAQNATTPGDITVQE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 101 NVLSGRVGYHPT---WKmvlglfpKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILADEPVAS 177
Cdd:PRK10253 101 LVARGRYPHQPLftrWR-------KEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTW 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 613390585 178 LDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE-ATDDVFSKIYG 245
Cdd:PRK10253 174 LDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEiVTAELIERIYG 242
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
4-244 |
4.61e-39 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 142.61 E-value: 4.61e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAhgkALLEMRRNI 83
Cdd:COG1132 340 IEFENVSFSYPGDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDL---TLESLRRQI 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRsSVLRNVLSGRVGYHptwkmvlglfpkEDKIKAmdALERVNILD-------KYN----QRSDELSGGQ 152
Cdd:COG1132 417 GVVPQDTFLFSG-TIRENIRYGRPDAT------------DEEVEE--AAKAAQAHEfiealpdGYDtvvgERGVNLSGGQ 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 153 QQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQelGITILI---NLHFVDLAkeygTRIIGLRDGEVVYD 229
Cdd:COG1132 482 RQRIAIARALLKDPPILILDEATSALDTETEALIQEALERLMK--GRTTIViahRLSTIRNA----DRILVLDDGRIVEQ 555
|
250
....*....|....*..
gi 613390585 230 GPASE--ATDDVFSKIY 244
Cdd:COG1132 556 GTHEEllARGGLYARLY 572
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
4-243 |
7.70e-39 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 136.37 E-value: 7.70e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNG-----HVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAhgKALLE 78
Cdd:PRK13633 5 IKCKNVSYKYESNeesteKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDE--ENLWD 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 79 MRRNIGMIFQHFNlvkrSSVLRNVLSGRVGYHPTwkmVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISI 158
Cdd:PRK13633 83 IRNKAGMVFQNPD----NQIVATIVEEDVAFGPE---NLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAI 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 159 ARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEyGTRIIGLRDGEVVYDGPASEatdd 238
Cdd:PRK13633 156 AGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKE---- 230
|
....*
gi 613390585 239 VFSKI 243
Cdd:PRK13633 231 IFKEV 235
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
25-230 |
9.98e-39 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 134.16 E-value: 9.98e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 25 LNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITkahgkALLEMRRNIGMIFQHFNLVKRSSVLRNVLS 104
Cdd:cd03298 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVT-----AAPPADRPVSMLFQENNLFAHLTVEQNVGL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 105 GRVgyhPTWKMVlglfpKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILADEPVASLDPLTTK 184
Cdd:cd03298 94 GLS---PGLKLT-----AEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 613390585 185 QVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDG 230
Cdd:cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
1-238 |
1.15e-38 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 134.72 E-value: 1.15e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSQIEFKNVSKVYPNGHVgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITK--AHGKAlle 78
Cdd:COG0410 1 MPMLEVENLHAGYGGIHV-LHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGlpPHRIA--- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 79 mRRNIGM------IFQHFnlvkrsSVLRNvlsgrvgyhptwkMVLGLFPKEDKIKAMDALERV-----NILDKYNQRSDE 147
Cdd:COG0410 77 -RLGIGYvpegrrIFPSL------TVEEN-------------LLLGAYARRDRAEVRADLERVyelfpRLKERRRQRAGT 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 148 LSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILI---NLHFvdlAKEYGTRIIGLRDG 224
Cdd:COG0410 137 LSGGEQQMLAIGRALMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRLNRE-GVTILLveqNARF---ALEIADRAYVLERG 212
|
250
....*....|....
gi 613390585 225 EVVYDGPASEATDD 238
Cdd:COG0410 213 RIVLEGTAAELLAD 226
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
2-234 |
2.36e-38 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 140.66 E-value: 2.36e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 2 SQIEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALlemRR 81
Cdd:COG4988 335 PSIELEDVSFSYPGGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPASW---RR 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 82 NIGMIFQHFNLVKrSSVLRNVLSGRvgyhptwkmvlglfPKEDKIKAMDALERVNILD-------KYNQRSDE----LSG 150
Cdd:COG4988 412 QIAWVPQNPYLFA-GTIRENLRLGR--------------PDASDEELEAALEAAGLDEfvaalpdGLDTPLGEggrgLSG 476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 151 GQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELgITILI--NLHFVDLAkeygTRIIGLRDGEVVY 228
Cdd:COG4988 477 GQAQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGR-TVILIthRLALLAQA----DRILVLDDGRIVE 551
|
....*.
gi 613390585 229 DGPASE 234
Cdd:COG4988 552 QGTHEE 557
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
17-234 |
7.03e-38 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 133.56 E-value: 7.03e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 17 HVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSIT---------KAHGKALLEM-RRNIGMI 86
Cdd:PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINlvrdkdgqlKVADKNQLRLlRTRLTMV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 87 FQHFNLVKRSSVLRNVLSGRVgyhptwkMVLGLFPKEDKIKAMDALERVNILDKYNQRSD-ELSGGQQQRISIARALCQE 165
Cdd:PRK10619 98 FQHFNLWSHMTVLENVMEAPI-------QVLGLSKQEARERAVKYLAKVGIDERAQGKYPvHLSGGQQQRVSIARALAME 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 613390585 166 SEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE 234
Cdd:PRK10619 171 PEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQ 238
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
4-211 |
5.95e-37 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 132.55 E-value: 5.95e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYP---------NGHV-GLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHG 73
Cdd:COG4608 8 LEVRDLKKHFPvrgglfgrtVGVVkAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDITGLSG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 74 KALLEMRRNIGMIFQH----FNLVKR-SSVLRNVLsgrvgyhptwkMVLGLFPKEDKI-KAMDALERVNiLDK--YNQRS 145
Cdd:COG4608 88 RELRPLRRRMQMVFQDpyasLNPRMTvGDIIAEPL-----------RIHGLASKAERReRVAELLELVG-LRPehADRYP 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 613390585 146 DELSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHfvDLA 211
Cdd:COG4608 156 HEFSGGQRQRIGIARALALNPKLIVCDEPVSALDVSIQAQVLNLLEDLQDELGLTYLFISH--DLS 219
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
1-231 |
9.85e-37 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 131.10 E-value: 9.85e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSqIEFKNVSKVYPNG----HVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHG-KA 75
Cdd:PRK13641 1 MS-IKFENVDYIYSPGtpmeKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGnKN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 76 LLEMRRNIGMIFQhFNLVK--RSSVLRNVLSGRVGYhptwkmvlGLFPKEDKIKAMDALERVNILDKYNQRSD-ELSGGQ 152
Cdd:PRK13641 80 LKKLRKKVSLVFQ-FPEAQlfENTVLKDVEFGPKNF--------GFSEDEAKEKALKWLKKVGLSEDLISKSPfELSGGQ 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 153 QQRISIARALCQESEIILADEPVASLDPLTTKQVMdDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVV-YDGP 231
Cdd:PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMM-QLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIkHASP 229
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
4-234 |
1.02e-36 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 133.15 E-value: 1.02e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYpNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKallemRRNI 83
Cdd:PRK09452 15 VELRGISKSF-DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE-----NRHV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNVLSG-RVGYHPtwkmvlglfpkEDKIKA--MDALERVNILDKYNQRSDELSGGQQQRISIAR 160
Cdd:PRK09452 89 NTVFQSYALFPHMTVFENVAFGlRMQKTP-----------AAEITPrvMEALRMVQLEEFAQRKPHQLSGGQQQRVAIAR 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 613390585 161 ALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE 234
Cdd:PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPRE 231
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
18-234 |
1.03e-36 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 133.62 E-value: 1.03e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 18 VGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMRRN-IGMIFQHFNLVKRS 96
Cdd:PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKkIAMVFQSFALMPHM 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 97 SVLRNVLSGRvgyhptwkMVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILADEPVA 176
Cdd:PRK10070 122 TVLDNTAFGM--------ELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFS 193
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 613390585 177 SLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE 234
Cdd:PRK10070 194 ALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDE 251
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
8-224 |
1.13e-36 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 129.55 E-value: 1.13e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 8 NVSKVYPNGHVG---LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMR-RNI 83
Cdd:PRK11629 10 NLCKRYQEGSVQtdvLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRnQKL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNVlsgrvgyhptwKMVL---GLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIAR 160
Cdd:PRK11629 90 GFIYQFHHLLPDFTALENV-----------AMPLligKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIAR 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 613390585 161 ALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGtRIIGLRDG 224
Cdd:PRK11629 159 ALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMS-RQLEMRDG 221
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
1-236 |
1.17e-36 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 132.58 E-value: 1.17e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSqIEFKNVSKVYPNGHVgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGK---SITKAHgkall 77
Cdd:COG1118 1 MS-IEVRNISKRFGSFTL-LDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRdlfTNLPPR----- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 78 emRRNIGMIFQHFNLVKRSSVLRNVlsgrvGYHPTwkmVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRIS 157
Cdd:COG1118 74 --ERRVGFVFQHYALFPHMTVAENI-----AFGLR---VRPPSKAEIRARVEELLELVQLEGLADRYPSQLSGGQRQRVA 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 158 IARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEV--------VYD 229
Cdd:COG1118 144 LARALAVEPEVLLLDEPFGALDAKVRKELRRWLRRLHDELGGTTVFVTHDQEEALELADRVVVMNQGRIeqvgtpdeVYD 223
|
....*..
gi 613390585 230 GPASEAT 236
Cdd:COG1118 224 RPATPFV 230
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
4-238 |
2.22e-36 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 129.86 E-value: 2.22e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKallEMRRNI 83
Cdd:PRK13647 5 IEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEK---WVRSKV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQH-FNLVKRSSVLRNVLSGRVGyhptwkmvLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARAL 162
Cdd:PRK13647 82 GLVFQDpDDQVFSSTVWDDVAFGPVN--------MGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVL 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 613390585 163 CQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASEATDD 238
Cdd:PRK13647 154 AMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDE 228
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
4-242 |
5.51e-36 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 127.84 E-value: 5.51e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHvgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKahgkaLLEMRRNI 83
Cdd:cd03299 1 LKVENLSKDWKEFK--LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITN-----LPPEKRDI 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNVLSGrvgyhptwkMVLGLFPK-EDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARAL 162
Cdd:cd03299 74 SYVPQNYALFPHMTVYKNIAYG---------LKKRKVDKkEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARAL 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 163 CQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASEatddVFSK 242
Cdd:cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEE----VFKK 220
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
1-206 |
5.60e-36 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 131.31 E-value: 5.60e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSQIEFKNVSKVYPNGHVGlKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKahgkaLLEMR 80
Cdd:PRK11000 1 MASVTLRNVTKAYGDVVIS-KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMND-----VPPAE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 81 RNIGMIFQHFNLVKRSSVLRNvlsgrvgyhptwkMVLGLfpKEDKIKAMDALERVN----------ILDKynqRSDELSG 150
Cdd:PRK11000 75 RGVGMVFQSYALYPHLSVAEN-------------MSFGL--KLAGAKKEEINQRVNqvaevlqlahLLDR---KPKALSG 136
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 613390585 151 GQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLH 206
Cdd:PRK11000 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 192
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
4-234 |
1.77e-35 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 126.08 E-value: 1.77e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNG-HVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKAllemRRN 82
Cdd:cd03263 1 LQIRNLTKTYKKGtKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAA----RQS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIFQHFNLVKRSSVLRNV-LSGRV-GYhptwkmvlglfPKEDKIKAMDALER-VNILDKYNQRSDELSGGQQQRISIA 159
Cdd:cd03263 77 LGYCPQFDALFDELTVREHLrFYARLkGL-----------PKSEIKEEVELLLRvLGLTDKANKRARTLSGGMKRKLSLA 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 613390585 160 RALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELgiTILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE 234
Cdd:cd03263 146 IALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGR--SIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQE 218
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
1-233 |
2.73e-35 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 128.81 E-value: 2.73e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSQIEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKahgkalLEMR 80
Cdd:PRK11650 1 MAGLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNE------LEPA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 81 -RNIGMIFQHFNLVKRSSVLRNvlsgrvgyhptwkMVLGL----FPKED---KI-KAMDALErvniLDKYNQRS-DELSG 150
Cdd:PRK11650 75 dRDIAMVFQNYALYPHMSVREN-------------MAYGLkirgMPKAEieeRVaEAARILE----LEPLLDRKpRELSG 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 151 GQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHfvD------LAKeygtRIIGLRDG 224
Cdd:PRK11650 138 GQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTH--DqveamtLAD----RVVVMNGG 211
|
250
....*....|....*..
gi 613390585 225 EV--------VYDGPAS 233
Cdd:PRK11650 212 VAeqigtpveVYEKPAS 228
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
20-245 |
3.76e-35 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 126.00 E-value: 3.76e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMRrniGMIFQH----FNLvkr 95
Cdd:COG4559 17 LDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWELARRR---AVLPQHsslaFPF--- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 96 sSVLRNVLSGRVGYhptwkmvlGLFPKEDKIKAMDALERVNILDkYNQRS-DELSGGQQQRISIARALCQ-------ESE 167
Cdd:COG4559 91 -TVEEVVALGRAPH--------GSSAAQDRQIVREALALVGLAH-LAGRSyQTLSGGEQQRVQLARVLAQlwepvdgGPR 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 613390585 168 IILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASEA-TDDVFSKIYG 245
Cdd:COG4559 161 WLFLDEPTSALDLAHQHAVLRLARQLARR-GGGVVAVLHDLNLAAQYADRILLLHQGRLVAQGTPEEVlTDELLERVYG 238
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
1-226 |
4.35e-35 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 128.28 E-value: 4.35e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSqIEFKNVSKVYPNGHVgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKallemR 80
Cdd:PRK10851 1 MS-IEIANIKKSFGRTQV-LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR-----D 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 81 RNIGMIFQHFNLVKRSSVLRNVLSGrvgyhptwkmvLGLFPKED-------KIKAMDALERVNILDKYNQRSDELSGGQQ 153
Cdd:PRK10851 74 RKVGFVFQHYALFRHMTVFDNIAFG-----------LTVLPRRErpnaaaiKAKVTQLLEMVQLAHLADRYPAQLSGGQK 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 613390585 154 QRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEV 226
Cdd:PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNI 215
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
4-227 |
7.49e-35 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 124.60 E-value: 7.49e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMRRNI 83
Cdd:PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNVlsgrvgyhpTWKMVLGLFPKED-KIKAMDALERVNILDKYNQRSDELSGGQQQRISIARAL 162
Cdd:PRK10908 82 GMIFQDHHLLMDRTVYDNV---------AIPLIIAGASGDDiRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAV 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 613390585 163 CQESEIILADEPVASLDPLTTKQVMDDLRKINQeLGITILINLHFVDLAKEYGTRIIGLRDGEVV 227
Cdd:PRK10908 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
4-241 |
8.73e-35 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 130.57 E-value: 8.73e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYP---------NGHV-GLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDiTSGEIFIQGKSITKAHG 73
Cdd:COG4172 276 LEARDLKVWFPikrglfrrtVGHVkAVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLIP-SEGEIRFDGQDLDGLSR 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 74 KALLEMRRNIGMIFQH-FN-LVKRSSVLRNVLSGRVGYHPtwkmvlGLFPKEDKIKAMDALERV----NILDKYNQrsdE 147
Cdd:COG4172 355 RALRPLRRRMQVVFQDpFGsLSPRMTVGQIIAEGLRVHGP------GLSAAERRARVAEALEEVgldpAARHRYPH---E 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 148 LSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGIT-ILINlHfvDLA--KEYGTRIIGLRDG 224
Cdd:COG4172 426 FSGGQRQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLRDLQREHGLAyLFIS-H--DLAvvRALAHRVMVMKDG 502
|
250
....*....|....*..
gi 613390585 225 EVVYDGPaseaTDDVFS 241
Cdd:COG4172 503 KVVEQGP----TEQVFD 515
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
4-234 |
1.64e-34 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 126.76 E-value: 1.64e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKallemRRNI 83
Cdd:PRK11432 7 VVLKNITKRFGSNTV-IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ-----QRDI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNVlsgrvGYhpTWKMvLGLFPKEDKIKAMDALERVNiLDKYNQR-SDELSGGQQQRISIARAL 162
Cdd:PRK11432 81 CMVFQSYALFPHMSLGENV-----GY--GLKM-LGVPKEERKQRVKEALELVD-LAGFEDRyVDQISGGQQQRVALARAL 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 613390585 163 CQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE 234
Cdd:PRK11432 152 ILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQE 223
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
1-242 |
1.86e-34 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 124.25 E-value: 1.86e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSQIEFKNVSKVYPNGHVgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDI-----TSGEIFIQGKSITKAHgka 75
Cdd:PRK14247 1 MNKIEIRDLKVSFGQVEV-LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELypearVSGEVYLDGQDIFKMD--- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 76 LLEMRRNIGMIFQHFNLVKRSSVLRNVlsgrvgyhptwkmVLGL-------FPKEDKIKAMDALERVNILDKYNQRSD-- 146
Cdd:PRK14247 77 VIELRRRVQMVFQIPNPIPNLSIFENV-------------ALGLklnrlvkSKKELQERVRWALEKAQLWDEVKDRLDap 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 147 --ELSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELgiTILINLHFVDLAKEYGTRIIGLRDG 224
Cdd:PRK14247 144 agKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDM--TIVLVTHFPQQAARISDYVAFLYKG 221
|
250
....*....|....*...
gi 613390585 225 EVVYDGPaseaTDDVFSK 242
Cdd:PRK14247 222 QIVEWGP----TREVFTN 235
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
20-245 |
2.45e-34 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 124.11 E-value: 2.45e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMRrniGMIFQHFNLVKRSSVL 99
Cdd:PRK13548 18 LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR---AVLPQHSSLSFPFTVE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 100 RNVLSGRvgyhptwkMVLGLFPKEDKIKAMDALERVNILDkYNQRS-DELSGGQQQRISIARALCQESE------IILAD 172
Cdd:PRK13548 95 EVVAMGR--------APHGLSRAEDDALVAAALAQVDLAH-LAGRDyPQLSGGEQQRVQLARVLAQLWEpdgpprWLLLD 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 613390585 173 EPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASEA-TDDVFSKIYG 245
Cdd:PRK13548 166 EPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVlTPETLRRVYG 239
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
1-254 |
2.48e-34 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 124.77 E-value: 2.48e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSqIEFKNVSKVY----PNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKaL 76
Cdd:PRK13637 1 MS-IKIENLTHIYmegtPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVK-L 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 77 LEMRRNIGMIFQHfnlvKRSSVLRNVLSGRVGYHPTwkmVLGLFPKEDKIKAMDALERVNI-LDKYNQRSD-ELSGGQQQ 154
Cdd:PRK13637 79 SDIRKKVGLVFQY----PEYQLFEETIEKDIAFGPI---NLGLSEEEIENRVKRAMNIVGLdYEDYKDKSPfELSGGQKR 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 155 RISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFV-DLAKeYGTRIIGLRDGEVVYDGPAS 233
Cdd:PRK13637 152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMeDVAK-LADRIIVMNKGKCELQGTPR 230
|
250 260
....*....|....*....|.
gi 613390585 234 EatddVFskiygrtiKEDEKL 254
Cdd:PRK13637 231 E----VF--------KEVETL 239
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
13-211 |
2.52e-34 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 122.15 E-value: 2.52e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 13 YPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSItkAHG-KALLEMRRNIGMIFQHfn 91
Cdd:TIGR01166 1 YPGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPL--DYSrKGLLERRQRVGLVFQD-- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 92 lvKRSSVLRNVLSGRVGYHPtwkMVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILA 171
Cdd:TIGR01166 77 --PDDQLFAADVDQDVAFGP---LNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLL 151
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 613390585 172 DEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLA 211
Cdd:TIGR01166 152 DEPTAGLDPAGREQMLAILRRLRAE-GMTVVISTHDVDLA 190
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
4-234 |
2.53e-34 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 123.10 E-value: 2.53e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALlemRRNI 83
Cdd:cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSL---RSMI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRsSVLRNVLSGRvgyhptwkmvlgLFPKEDKIKAmdALERVNILD-----------KYNQRSDELSGGQ 152
Cdd:cd03254 80 GVVLQDTFLFSG-TIMENIRLGR------------PNATDEEVIE--AAKEAGAHDfimklpngydtVLGENGGNLSQGE 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 153 QQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQelGITILINLHFVDLAKEyGTRIIGLRDGEVVYDGPA 232
Cdd:cd03254 145 RQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMK--GRTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTH 221
|
..
gi 613390585 233 SE 234
Cdd:cd03254 222 DE 223
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
4-234 |
3.63e-34 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 124.36 E-value: 3.63e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNG-HVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKahgKALLEMRRN 82
Cdd:PRK13635 6 IRVEHISFRYPDAaTYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSE---ETVWDVRRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIFQH-FNLVKRSSVLRNVlsgrvgyhptwkmVLGL----FPKEDKIKAMD-ALERVNILDKYNQRSDELSGGQQQRI 156
Cdd:PRK13635 83 VGMVFQNpDNQFVGATVQDDV-------------AFGLenigVPREEMVERVDqALRQVGMEDFLNREPHRLSGGQKQRV 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 613390585 157 SIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEyGTRIIGLRDGEVVYDGPASE 234
Cdd:PRK13635 150 AIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEE 226
|
|
| PhnT2 |
TIGR03265 |
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ... |
1-233 |
3.84e-34 |
|
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274496 [Multi-domain] Cd Length: 353 Bit Score: 125.92 E-value: 3.84e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSQIEFKNVSKVYpNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITkahgkALLEMR 80
Cdd:TIGR03265 2 SPYLSIDNIRKRF-GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDIT-----RLPPQK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 81 RNIGMIFQHFNLVKRSSVLRNV---LSGRvgyhptwkmvlGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRIS 157
Cdd:TIGR03265 76 RDYGIVFQSYALFPNLTVADNIaygLKNR-----------GMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVA 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 158 IARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEV--------VYD 229
Cdd:TIGR03265 145 LARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIeqvgtpqeIYR 224
|
....
gi 613390585 230 GPAS 233
Cdd:TIGR03265 225 HPAT 228
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
4-245 |
4.70e-34 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 123.74 E-value: 4.70e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSkVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDI-----TSGEIFIQGKSITKAHGKALlE 78
Cdd:PRK14243 11 LRTENLN-VYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLipgfrVEGKVTFHGKNLYAPDVDPV-E 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 79 MRRNIGMIFQHFNLVKRSsVLRNVLSG-RV-GYhptwkmvlglfpKEDkikaMDAL-ERV--------NILDKYNQRSDE 147
Cdd:PRK14243 89 VRRRIGMVFQKPNPFPKS-IYDNIAYGaRInGY------------KGD----MDELvERSlrqaalwdEVKDKLKQSGLS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 148 LSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITIL----------------INLHFVDLA 211
Cdd:PRK14243 152 LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVthnmqqaarvsdmtafFNVELTEGG 231
|
250 260 270
....*....|....*....|....*....|....
gi 613390585 212 KEYGtRIIGLRDGEVVYDGPASEATDDVFSKIYG 245
Cdd:PRK14243 232 GRYG-YLVEFDRTEKIFNSPQQQATRDYVSGRFG 264
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
3-239 |
9.81e-34 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 123.66 E-value: 9.81e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 3 QIEFKNVSKVY----PNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEI--FIQGKSITKAHG--- 73
Cdd:PRK13651 2 QIKVKNIVKIFnkklPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIewIFKDEKNKKKTKeke 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 74 ----------------KALLEMRRNIGMIFQ--HFNLVKrSSVLRNVLSGRVGYhptwkmvlGLFPKEDKIKAMDALERV 135
Cdd:PRK13651 82 kvleklviqktrfkkiKKIKEIRRRVGVVFQfaEYQLFE-QTIEKDIIFGPVSM--------GVSKEEAKKRAAKYIELV 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 136 NILDKYNQRSD-ELSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEY 214
Cdd:PRK13651 153 GLDESYLQRSPfELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ-GKTIILVTHDLDNVLEW 231
|
250 260
....*....|....*....|....*
gi 613390585 215 GTRIIGLRDGEVVYDGPASEATDDV 239
Cdd:PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSDN 256
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
4-234 |
1.60e-33 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 121.18 E-value: 1.60e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALlemRRNI 83
Cdd:cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSL---RRAI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQH---FNlvkrSSVLRNVLSGRVGYhptwkmvlglfPKEDKIKAMDAL----ERVNILDKYN----QRSDELSGGQ 152
Cdd:cd03253 78 GVVPQDtvlFN----DTIGYNIRYGRPDA-----------TDEEVIEAAKAAqihdKIMRFPDGYDtivgERGLKLSGGE 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 153 QQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKI-NQELGITILINLHFVDLAKEygtrIIGLRDGEVVYDGP 231
Cdd:cd03253 143 KQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVsKGRTTIVIAHRLSTIVNADK----IIVLKDGRIVERGT 218
|
...
gi 613390585 232 ASE 234
Cdd:cd03253 219 HEE 221
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
4-250 |
2.30e-33 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 126.29 E-value: 2.30e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPnGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMRrnI 83
Cdd:COG1129 5 LEMRGISKSFG-GVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSPRDAQAAG--I 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNVLSGRvgyHPTWKMVLGlfPKEDKIKAMDALERVNI-LDKyNQRSDELSGGQQQRISIARAL 162
Cdd:COG1129 82 AIIHQELNLVPNLSVAENIFLGR---EPRRGGLID--WRAMRRRARELLARLGLdIDP-DTPVGDLSVAQQQLVEIARAL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 163 CQESEIILADEPVASLDPLTTKQ---VMDDLRkinqELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASEAT-DD 238
Cdd:COG1129 156 SRDARVLILDEPTASLTEREVERlfrIIRRLK----AQGVAIIYISHRLDEVFEIADRVTVLRDGRLVGTGPVAELTeDE 231
|
250
....*....|..
gi 613390585 239 VFSKIYGRTIKE 250
Cdd:COG1129 232 LVRLMVGRELED 243
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
4-242 |
2.43e-33 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 122.44 E-value: 2.43e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVY----PNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSIT-KAHGKALLE 78
Cdd:PRK13634 3 ITFQKVEHRYqyktPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITaGKKNKKLKP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 79 MRRNIGMIFQhF--NLVKRSSVLRNVLSGrvgyhptwKMVLGLFPKEDKIKAMDALERVNILDKYNQRSD-ELSGGQQQR 155
Cdd:PRK13634 83 LRKKVGIVFQ-FpeHQLFEETVEKDICFG--------PMNFGVSEEDAKQKAREMIELVGLPEELLARSPfELSGGQMRR 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 156 ISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASEa 235
Cdd:PRK13634 154 VAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE- 232
|
....*..
gi 613390585 236 tddVFSK 242
Cdd:PRK13634 233 ---IFAD 236
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
4-236 |
5.49e-33 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 125.14 E-value: 5.49e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPnGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAH-GKAlleMRRN 82
Cdd:COG3845 6 LELRGITKRFG-GVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPVRIRSpRDA---IALG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIFQHFNLVKRSSVLRNVLsgrVGYHPTWKMVLglfpkeDKIKAMDALERvnILDKY------NQRSDELSGGQQQRI 156
Cdd:COG3845 82 IGMVHQHFMLVPNLTVAENIV---LGLEPTKGGRL------DRKAARARIRE--LSERYgldvdpDAKVEDLSVGEQQRV 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 157 SIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASEAT 236
Cdd:COG3845 151 EILKALYRGARILILDEPTAVLTPQEADELFEILRRLAAE-GKSIIFITHKLREVMAIADRVTVLRRGKVVGTVDTAETS 229
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-219 |
1.29e-32 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 119.58 E-value: 1.29e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSQIEFKNVSKVYPNG---HVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGkall 77
Cdd:COG4525 1 MSMLTVRHVSVRYPGGgqpQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTGPGA---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 78 emRRniGMIFQHFNLVKRSSVLRNVlsgrvgyhptwkmVLGL----FPK-EDKIKAMDALERVNILDKYNQRSDELSGGQ 152
Cdd:COG4525 77 --DR--GVVFQKDALLPWLNVLDNV-------------AFGLrlrgVPKaERRARAEELLALVGLADFARRRIWQLSGGM 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 613390585 153 QQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRII 219
Cdd:COG4525 140 RQRVGIARALAADPRFLLMDEPFGALDALTREQMQELLLDVWQRTGKGVFLITHSVEEALFLATRLV 206
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
7-229 |
2.01e-32 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 119.01 E-value: 2.01e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 7 KNVSKVYPNGHVgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFiqgksitkAHGKALLEMRRNIGMI 86
Cdd:PRK11247 16 NAVSKRYGERTV-LNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELL--------AGTAPLAEAREDTRLM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 87 FQHFNLVKRSSVLRNVLSGRVGyhpTWKMvlglfpkedkiKAMDALERVNILDKYNQRSDELSGGQQQRISIARALCQES 166
Cdd:PRK11247 87 FQDARLLPWKKVIDNVGLGLKG---QWRD-----------AALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRP 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 613390585 167 EIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYD 229
Cdd:PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLD 215
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
4-234 |
3.81e-32 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 117.47 E-value: 3.81e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYpNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGkallEMRRNI 83
Cdd:cd03265 1 IEVENLVKKY-GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPR----EVRRRI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQhfnlvkrSSVLRNVLSGR--VGYHPTwkmVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARA 161
Cdd:cd03265 76 GIVFQ-------DLSVDDELTGWenLYIHAR---LYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARS 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 613390585 162 LCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE 234
Cdd:cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
4-229 |
4.83e-32 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 118.26 E-value: 4.83e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVY----PNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITK--AHGKAll 77
Cdd:COG1101 2 LELKNLSKTFnpgtVNEKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKlpEYKRA-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 78 emrRNIGMIFQH------FNLvkrsSVLRN-VLSGRVGYHPTWKmvLGLFPKE-----DKIKAMD-ALErvnilDKYNQR 144
Cdd:COG1101 80 ---KYIGRVFQDpmmgtaPSM----TIEENlALAYRRGKRRGLR--RGLTKKRrelfrELLATLGlGLE-----NRLDTK 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 145 SDELSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDG 224
Cdd:COG1101 146 VGLLSGGQRQALSLLMATLTKPKLLLLDEHTAALDPKTAALVLELTEKIVEENNLTTLMVTHNMEQALDYGNRLIMMHEG 225
|
....*
gi 613390585 225 EVVYD 229
Cdd:COG1101 226 RIILD 230
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
5-238 |
1.27e-31 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 116.09 E-value: 1.27e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 5 EFKNVSKVYPNGHVgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITK--AHGKAllemRRN 82
Cdd:TIGR03410 2 EVSNLNVYYGQSHI-LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKlpPHERA----RAG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IG------MIFQHFnlvkrsSVLRNVLSGrvgyhptwkmvLGLFPKEDKIKAMDALERVNIL-DKYNQRSDELSGGQQQR 155
Cdd:TIGR03410 77 IAyvpqgrEIFPRL------TVEENLLTG-----------LAALPRRSRKIPDEIYELFPVLkEMLGRRGGDLSGGQQQQ 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 156 ISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASEA 235
Cdd:TIGR03410 140 LAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
...
gi 613390585 236 TDD 238
Cdd:TIGR03410 220 DED 222
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
2-206 |
1.38e-31 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 121.62 E-value: 1.38e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 2 SQIEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALlemRR 81
Cdd:TIGR02857 320 SSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW---RD 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 82 NIGMIFQHFNLVKrSSVLRNVLSGRVGYHPTwkMVlglfpkEDKIKAMDALERVNIL-DKYNQRSDE----LSGGQQQRI 156
Cdd:TIGR02857 397 QIAWVPQHPFLFA-GTIAENIRLARPDASDA--EI------REALERAGLDEFVAALpQGLDTPIGEggagLSGGQAQRL 467
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 613390585 157 SIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQelGITILINLH 206
Cdd:TIGR02857 468 ALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ--GRTVLLVTH 515
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
4-229 |
2.60e-31 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 113.29 E-value: 2.60e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKsitKAHGKALLEMRRN- 82
Cdd:cd03216 1 LELRGITKRFGGVKA-LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGK---EVSFASPRDARRAg 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIFQhfnlvkrssvlrnvlsgrvgyhptwkmvlglfpkedkikamdalervnildkynqrsdeLSGGQQQRISIARAL 162
Cdd:cd03216 77 IAMVYQ-----------------------------------------------------------LSVGERQMVEIARAL 97
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 613390585 163 CQESEIILADEPVASLDPLTTKQVMDDLRKInQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYD 229
Cdd:cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRL-RAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
2-250 |
4.52e-31 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 115.67 E-value: 4.52e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 2 SQIEFKNVSKVYPNGHVG--------LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHG 73
Cdd:TIGR02769 1 SLLEVRDVTHTYRTGGLFgakqrapvLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 74 KALLEMRRNIGMIFQH----FNlvKRSSV-------LRNVLSgrvgyhptwkmvLGLFPKEDKIKAM-DALE-RVNILDK 140
Cdd:TIGR02769 81 KQRRAFRRDVQLVFQDspsaVN--PRMTVrqiigepLRHLTS------------LDESEQKARIAELlDMVGlRSEDADK 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 141 YNQrsdELSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIG 220
Cdd:TIGR02769 147 LPR---QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAV 223
|
250 260 270
....*....|....*....|....*....|
gi 613390585 221 LRDGEVVYDGPASEatDDVFSKIYGRTIKE 250
Cdd:TIGR02769 224 MDKGQIVEECDVAQ--LLSFKHPAGRNLQS 251
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
20-230 |
6.50e-31 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 114.49 E-value: 6.50e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLemrrnigmIFQHFNLVKRSSVL 99
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMV--------VFQNYSLLPWLTVR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 100 RNVLSGRvgyhptwKMVLGLFPKEDKIKAMDA-LERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILADEPVASL 178
Cdd:TIGR01184 73 ENIALAV-------DRVLPDLSKSERRAIVEEhIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGAL 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 613390585 179 DPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDG 230
Cdd:TIGR01184 146 DALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
4-256 |
1.01e-30 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 115.23 E-value: 1.01e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNG----HVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSIT-KAHGKALLE 78
Cdd:PRK13649 3 INLQNVSYTYQAGtpfeGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITsTSKNKDIKQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 79 MRRNIGMIFQhF--NLVKRSSVLRNVLSGRVGYhptwkmvlGLFPKEDKIKAMDALERVNILDKYNQRSD-ELSGGQQQR 155
Cdd:PRK13649 83 IRKKVGLVFQ-FpeSQLFEETVLKDVAFGPQNF--------GVSQEEAEALAREKLALVGISESLFEKNPfELSGGQMRR 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 156 ISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASea 235
Cdd:PRK13649 154 VAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS-GMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPK-- 230
|
250 260
....*....|....*....|.
gi 613390585 236 tdDVFSKIygrTIKEDEKLGV 256
Cdd:PRK13649 231 --DIFQDV---DFLEEKQLGV 246
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
20-230 |
1.50e-30 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 113.16 E-value: 1.50e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIE---KGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLE-MRRNIGMIFQHFNLVKR 95
Cdd:cd03297 10 LPDFTLKIDfdlNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPpQQRKIGLVFQQYALFPH 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 96 SSVLRNVLSGrvgyhptwkmVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILADEPV 175
Cdd:cd03297 90 LNVRENLAFG----------LKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPF 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 613390585 176 ASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDG 230
Cdd:cd03297 160 SALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
4-230 |
1.58e-30 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 113.07 E-value: 1.58e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNG-HVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHgkaLLEMRRN 82
Cdd:cd03245 3 IEFRNVSFSYPNQeIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLD---PADLRRN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIFQHFNLVKRSsvLR-NVLSGRvgyhptwkmvlglfPKEDKIKAMDALERVNILDKYNQ-----------RSDELSG 150
Cdd:cd03245 80 IGYVPQDVTLFYGT--LRdNITLGA--------------PLADDERILRAAELAGVTDFVNKhpngldlqigeRGRGLSG 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 151 GQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRkinQEL-GITILINLH---FVDLAkeygTRIIGLRDGEV 226
Cdd:cd03245 144 GQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLR---QLLgDKTLIIITHrpsLLDLV----DRIIVMDSGRI 216
|
....
gi 613390585 227 VYDG 230
Cdd:cd03245 217 VADG 220
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
24-234 |
2.74e-30 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 112.75 E-value: 2.74e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 24 NLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHgkallEMRRNIGMIFQHFNLVKRSSVLRNVl 103
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTP-----PSRRPVSMLFQENNLFSHLTVAQNI- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 104 sgRVGYHPTWKMvlglfPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILADEPVASLDPLTT 183
Cdd:PRK10771 93 --GLGLNPGLKL-----NAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALR 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 613390585 184 KQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE 234
Cdd:PRK10771 166 QEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDE 216
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
24-226 |
3.12e-30 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 112.26 E-value: 3.12e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 24 NLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKahgkaLLEMRRNIGMIFQHFNLVKRSSVLRNVl 103
Cdd:TIGR01277 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTG-----LAPYQRPVSMLFQENNLFAHLTVRQNI- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 104 sgRVGYHPTWKMVlglfpKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILADEPVASLDPLTT 183
Cdd:TIGR01277 92 --GLGLHPGLKLN-----AEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLR 164
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 613390585 184 KQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEV 226
Cdd:TIGR01277 165 EEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
4-230 |
4.19e-30 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 111.90 E-value: 4.19e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVgLKNINLNIEKGEFAvIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKalleMRRNI 83
Cdd:cd03264 1 LQLENLTKRYGKKRA-LDGVSLTLGPGMYG-LLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQK----LRRRI 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNVlsgrvgYHPTWkmVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALC 163
Cdd:cd03264 75 GYLPQEFGVYPNFTVREFL------DYIAW--LKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALV 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 613390585 164 QESEIILADEPVASLDPlttKQVMdDLRKINQELG--ITILINLHFVDLAKEYGTRIIGLRDGEVVYDG 230
Cdd:cd03264 147 GDPSILIVDEPTAGLDP---EERI-RFRNLLSELGedRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
2-234 |
5.89e-30 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 112.41 E-value: 5.89e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 2 SQIEFKNVSKVYPNGHVgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALlemRR 81
Cdd:PRK11231 1 MTLRTENLTVGYGTKRI-LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQL---AR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 82 NIGMIFQHFNLVKRSSVLRNVLSGRVGYHPTWkmvlGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARA 161
Cdd:PRK11231 77 RLALLPQHHLTPEGITVRELVAYGRSPWLSLW----GRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMV 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 613390585 162 LCQESEIILADEPVASLDplTTKQV--MDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE 234
Cdd:PRK11231 153 LAQDTPVVLLDEPTTYLD--INHQVelMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEE 224
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
12-245 |
7.35e-30 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 112.18 E-value: 7.35e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 12 VYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDI-----TSGEIFIQGKSITKAHGKALlEMRRNIGMI 86
Cdd:PRK14239 13 VYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLnpevtITGSIVYNGHNIYSPRTDTV-DLRKEIGMV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 87 FQHFNLVKrSSVLRNVLSGrvgyhptwkmvLGLFPKEDKIKAMDALER----VNILDKYNQRSDE----LSGGQQQRISI 158
Cdd:PRK14239 92 FQQPNPFP-MSIYENVVYG-----------LRLKGIKDKQVLDEAVEKslkgASIWDEVKDRLHDsalgLSGGQQQRVCI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 159 ARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELgiTILINLHFVDLAKEYGTRIIGLRDGEVV--------YDG 230
Cdd:PRK14239 160 ARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDY--TMLLVTRSMQQASRISDRTGFFLDGDLIeyndtkqmFMN 237
|
250
....*....|....*
gi 613390585 231 PASEATDDVFSKIYG 245
Cdd:PRK14239 238 PKHKETEDYISGKFG 252
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
4-234 |
9.49e-30 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 111.48 E-value: 9.49e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPN--GHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALlemRR 81
Cdd:cd03249 1 IEFKNVSFRYPSrpDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWL---RS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 82 NIGMIFQH---FNlvkrSSVLRNVLSGRvgYHPTWKMVlglfpkEDKIKAMDALERVNIL-DKYN----QRSDELSGGQQ 153
Cdd:cd03249 78 QIGLVSQEpvlFD----GTIAENIRYGK--PDATDEEV------EEAAKKANIHDFIMSLpDGYDtlvgERGSQLSGGQK 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 154 QRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKInqELGITILINLHFVDLAKeYGTRIIGLRDGEVVYDGPAS 233
Cdd:cd03249 146 QRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRA--MKGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQGTHD 222
|
.
gi 613390585 234 E 234
Cdd:cd03249 223 E 223
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
35-234 |
2.29e-29 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 112.59 E-value: 2.29e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 35 IVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITK--AHgkallemRRNIGMIFQHFNLVKRSSVLRNVLSGrvgyhpt 112
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNvpPH-------LRHINMVFQSYALFPHMTVEENVAFG------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 113 WKMvLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRK 192
Cdd:TIGR01187 67 LKM-RKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKT 145
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 613390585 193 INQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE 234
Cdd:TIGR01187 146 IQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEE 187
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
23-238 |
2.77e-29 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 112.49 E-value: 2.77e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 23 INLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMRRNIGMIFQH--FNLVKRSSV-- 98
Cdd:PRK15079 40 VTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDplASLNPRMTIge 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 99 -----LRNvlsgrvgYHPtwKMvlglfPKE---DKIKAMdaLERVNIL-DKYNQRSDELSGGQQQRISIARALCQESEII 169
Cdd:PRK15079 120 iiaepLRT-------YHP--KL-----SRQevkDRVKAM--MLKVGLLpNLINRYPHEFSGGQCQRIGIARALILEPKLI 183
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 613390585 170 LADEPVASLDPLTTKQVMDDLRKINQELGITILINLHfvDLA--KEYGTRIIglrdgeVVYDGPASE-ATDD 238
Cdd:PRK15079 184 ICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAH--DLAvvKHISDRVL------VMYLGHAVElGTYD 247
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
20-241 |
3.42e-29 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 114.78 E-value: 3.42e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHD----ITSGEIFIQGKSITKAHGKALLEMR-RNIGMIFQH----F 90
Cdd:COG4172 26 VKGVSFDIAAGETLALVGESGSGKSVTALSILRLLPdpaaHPSGSILFDGQDLLGLSERELRRIRgNRIAMIFQEpmtsL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 91 NLVKR-----SSVLRnvlsgrvgYHptwkmvLGLFPKEDKIKAMDALERVNILD---KYNQRSDELSGGQQQRISIARAL 162
Cdd:COG4172 106 NPLHTigkqiAEVLR--------LH------RGLSGAAARARALELLERVGIPDperRLDAYPHQLSGGQRQRVMIAMAL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 163 CQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHfvDLA--KEYGTRIIGLRDGEVVYDGPaseaTDDVF 240
Cdd:COG4172 172 ANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITH--DLGvvRRFADRVAVMRQGEIVEQGP----TAELF 245
|
.
gi 613390585 241 S 241
Cdd:COG4172 246 A 246
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
1-250 |
4.04e-29 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 110.55 E-value: 4.04e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSQIEFKNVSKVYPNGHVG--------LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAH 72
Cdd:PRK10419 1 MTLLNVSGLSHHYAHGGLSgkhqhqtvLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 73 GKALLEMRRNIGMIFQH----FNlvKRSSVlrnvlsGRVGYHPTwKMVLGLFPKEDKIKAMDALERVN----ILDKynqR 144
Cdd:PRK10419 81 RAQRKAFRRDIQMVFQDsisaVN--PRKTV------REIIREPL-RHLLSLDKAERLARASEMLRAVDlddsVLDK---R 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 145 SDELSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDG 224
Cdd:PRK10419 149 PPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNG 228
|
250 260
....*....|....*....|....*.
gi 613390585 225 EVVYDGPASEAtdDVFSKIYGRTIKE 250
Cdd:PRK10419 229 QIVETQPVGDK--LTFSSPAGRVLQN 252
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
4-230 |
4.14e-29 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 109.29 E-value: 4.14e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNgHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHgkallemRRNI 83
Cdd:cd03269 1 LEVENVTKRFGR-VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAA-------RNRI 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNVLsgrvgYHPTWKmvlGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALC 163
Cdd:cd03269 73 GYLPEERGLYPKMKVIDQLV-----YLAQLK---GLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVI 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 613390585 164 QESEIILADEPVASLDPLTTKQVMDDLRKInQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDG 230
Cdd:cd03269 145 HDPELLILDEPFSGLDPVNVELLKDVIREL-ARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
11-234 |
8.99e-29 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 110.56 E-value: 8.99e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 11 KVYpNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKalleMRRNIGMIFQHF 90
Cdd:TIGR01188 1 KVY-GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRK----VRRSIGIVPQYA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 91 NLVKRSSVLRN-VLSGRVgyhptwkmvLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALCQESEII 169
Cdd:TIGR01188 76 SVDEDLTGRENlEMMGRL---------YGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVL 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 613390585 170 LADEPVASLDPLTTKQVMDDLRKINqELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE 234
Cdd:TIGR01188 147 FLDEPTTGLDPRTRRAIWDYIRALK-EEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEE 210
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
7-245 |
1.31e-28 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 109.11 E-value: 1.31e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 7 KNVSKVYPnGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALlemRRNIGMI 86
Cdd:PRK10575 15 RNVSFRVP-GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAF---ARKVAYL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 87 FQHFNLVKRSSVLRNVLSGRvgyHPtWKMVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALCQES 166
Cdd:PRK10575 91 PQQLPAAEGMTVRELVAIGR---YP-WHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDS 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 167 EIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASEATD-DVFSKIYG 245
Cdd:PRK10575 167 RCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRgETLEQIYG 246
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
4-230 |
1.44e-28 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 109.87 E-value: 1.44e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNG----HVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSIT-KAHGKALLE 78
Cdd:PRK13646 3 IRFDNVSYTYQKGtpyeHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITIThKTKDKYIRP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 79 MRRNIGMIFQhfnlVKRSSVLRNVLSGRVGYHP-TWKMVLglfpKEDKIKAMDALERVNI-LDKYNQRSDELSGGQQQRI 156
Cdd:PRK13646 83 VRKRIGMVFQ----FPESQLFEDTVEREIIFGPkNFKMNL----DEVKNYAHRLLMDLGFsRDVMSQSPFQMSGGQMRKI 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 613390585 157 SIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDG 230
Cdd:PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQT 228
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
20-226 |
3.26e-28 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 107.17 E-value: 3.26e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMR-RNIGMIFQHFNLVKRSSV 98
Cdd:PRK10584 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRaKHVGFVFQSFMLIPTLNA 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 99 LRNV-LSGrvgyhptwkMVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILADEPVAS 177
Cdd:PRK10584 106 LENVeLPA---------LLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGN 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 613390585 178 LDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRiIGLRDGEV 226
Cdd:PRK10584 177 LDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRR-LRLVNGQL 224
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
4-249 |
3.84e-28 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 111.80 E-value: 3.84e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHvGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKalLEMRRNI 83
Cdd:PRK09700 6 ISMAGIGKSFGPVH-ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHK--LAAQLGI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNVLSGRvgyHPTwKMVLGLFP---KEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIAR 160
Cdd:PRK09700 83 GIIYQELSVIDELTVLENLYIGR---HLT-KKVCGVNIidwREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAK 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 161 ALCQESEIILADEPVASldpLTTKQV------MDDLRKinqeLGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE 234
Cdd:PRK09700 159 TLMLDAKVIIMDEPTSS---LTNKEVdylfliMNQLRK----EGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD 231
|
250
....*....|....*.
gi 613390585 235 AT-DDVFSKIYGRTIK 249
Cdd:PRK09700 232 VSnDDIVRLMVGRELQ 247
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
1-234 |
4.50e-28 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 108.35 E-value: 4.50e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSQIEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHgkaLLEMR 80
Cdd:PRK13652 1 MHLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKEN---IREVR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 81 RNIGMIFQHFNlvkrSSVLRNVLSGRVGYHPTwkmVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIAR 160
Cdd:PRK13652 78 KFVGLVFQNPD----DQIFSPTVEQDIAFGPI---NLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAG 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 613390585 161 ALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE 234
Cdd:PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEE 224
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
4-234 |
5.69e-28 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 107.77 E-value: 5.69e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGH-VGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHgkaLLEMRRN 82
Cdd:PRK13632 8 IKVENVSFSYPNSEnNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKEN---LKEIRKK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIFQH-FNLVKRSSV-------LRNvlsgrvgyhptwKMVLglfPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQ 154
Cdd:PRK13632 85 IGIIFQNpDNQFIGATVeddiafgLEN------------KKVP---PKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQ 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 155 RISIARALCQESEIILADEPVASLDPL---TTKQVMDDLRKINQELGITILINLHFVDLAKeygtRIIGLRDGEVVYDGP 231
Cdd:PRK13632 150 RVAIASVLALNPEIIIFDESTSMLDPKgkrEIKKIMVDLRKTRKKTLISITHDMDEAILAD----KVIVFSEGKLIAQGK 225
|
...
gi 613390585 232 ASE 234
Cdd:PRK13632 226 PKE 228
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
4-234 |
9.49e-28 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 110.66 E-value: 9.49e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYpNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDI--TSGEIFIQ----------------G 65
Cdd:TIGR03269 1 IEVKNLTKKF-DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYepTSGRIIYHvalcekcgyverpskvG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 66 KSITKAHGKALLE--------------MRRNIGMIFQH-FNLVKRSSVLRNVLSG--RVGYhptwkmvlglfPKEDKI-K 127
Cdd:TIGR03269 80 EPCPVCGGTLEPEevdfwnlsdklrrrIRKRIAIMLQRtFALYGDDTVLDNVLEAleEIGY-----------EGKEAVgR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 128 AMDALERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHF 207
Cdd:TIGR03269 149 AVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228
|
250 260
....*....|....*....|....*..
gi 613390585 208 VDLAKEYGTRIIGLRDGEVVYDGPASE 234
Cdd:TIGR03269 229 PEVIEDLSDKAIWLENGEIKEEGTPDE 255
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
4-234 |
1.67e-27 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 107.12 E-value: 1.67e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYpNGHVGLKNINLNIEKGE-FAvIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHgkallemRRN 82
Cdd:COG4152 2 LELKGLTKRF-GDKTAVDDVSFTVPKGEiFG-LLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPED-------RRR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGmifqhF-----NLVKRSSVLRNVLsgrvgYHPTWKmvlGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRIS 157
Cdd:COG4152 73 IG-----YlpeerGLYPKMKVGEQLV-----YLARLK---GLSKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQ 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 613390585 158 IARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE 234
Cdd:COG4152 140 LIAALLHDPELLILDEPFSGLDPVNVELLKDVIRELAAK-GTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDE 215
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
3-206 |
2.32e-27 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 109.76 E-value: 2.32e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 3 QIEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKallEMRRN 82
Cdd:TIGR02868 334 TLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQD---EVRRR 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIFQHFNLVKrSSVLRNVLSGRvgyhptwkmvlglfPKEDKIKAMDALERVNILDKYNQRSD-----------ELSGG 151
Cdd:TIGR02868 411 VSVCAQDAHLFD-TTVRENLRLAR--------------PDATDEELWAALERVGLADWLRALPDgldtvlgeggaRLSGG 475
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 613390585 152 QQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGiTILINLH 206
Cdd:TIGR02868 476 ERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRT-VVLITHH 529
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
4-234 |
3.33e-27 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 105.31 E-value: 3.33e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVgLKNINLNI-EKGEFAvIVGLSGAGKSTLLRSVNRLHDIT-----SGEIFIQGKSITKAHGKALl 77
Cdd:PRK14267 5 IETVNLRVYYGSNHV-IKGVDLKIpQNGVFA-LMGPSGCGKSTLLRTFNRLLELNeearvEGEVRLFGRNIYSPDVDPI- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 78 EMRRNIGMIFQHFNLVKRSSVLRNVLSGrVGYHptwKMVLGLFPKEDKIKAmdALERV----NILDKYNQRSDELSGGQQ 153
Cdd:PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIG-VKLN---GLVKSKKELDERVEW--ALKKAalwdEVKDRLNDYPSNLSGGQR 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 154 QRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELgiTILINLHFVDLAKEYGTRIIGLRDGEVVYDGPAS 233
Cdd:PRK14267 156 QRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEY--TIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233
|
.
gi 613390585 234 E 234
Cdd:PRK14267 234 K 234
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
4-230 |
3.91e-27 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 104.62 E-value: 3.91e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPN-GHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSItkaHGKALLEMRRN 82
Cdd:cd03251 1 VEFKNVTFRYPGdGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDV---RDYTLASLRRQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIFQH---FNlvkrSSVLRNVLSGRvgyhptwkmvlglfPKEDKIKAMDALERVNILD-----------KYNQRSDEL 148
Cdd:cd03251 78 IGLVSQDvflFN----DTVAENIAYGR--------------PGATREEVEEAARAANAHEfimelpegydtVIGERGVKL 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 149 SGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQelGITILINLHFVDLAKEyGTRIIGLRDGEVVY 228
Cdd:cd03251 140 SGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK--NRTTFVIAHRLSTIEN-ADRIVVLEDGKIVE 216
|
..
gi 613390585 229 DG 230
Cdd:cd03251 217 RG 218
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
4-234 |
5.20e-27 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 108.74 E-value: 5.20e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVGL----KNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQ-GKS---ITKAHGKA 75
Cdd:TIGR03269 280 IKVRNVSKRYISVDRGVvkavDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRvGDEwvdMTKPGPDG 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 76 LLEMRRNIGMIFQHFNLVKRSSVLRNvLSGRVGYHptwkmvlglFPKE-DKIKAMDALERV--------NILDKYnqrSD 146
Cdd:TIGR03269 360 RGRAKRYIGILHQEYDLYPHRTVLDN-LTEAIGLE---------LPDElARMKAVITLKMVgfdeekaeEILDKY---PD 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 147 ELSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEV 226
Cdd:TIGR03269 427 ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKI 506
|
....*...
gi 613390585 227 VYDGPASE 234
Cdd:TIGR03269 507 VKIGDPEE 514
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
4-230 |
7.31e-27 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 108.51 E-value: 7.31e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALlemRRNI 83
Cdd:PRK13657 335 VEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASL---RRNI 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRsSVLRNVlsgRVGyhptwkmvlglfpKEDKIKA--MDALERVNILD-------KYN----QRSDELSG 150
Cdd:PRK13657 412 AVVFQDAGLFNR-SIEDNI---RVG-------------RPDATDEemRAAAERAQAHDfierkpdGYDtvvgERGRQLSG 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 151 GQQQRISIARALCQESEIILADEPVASLDPLT---TKQVMDDLRKinqelGITILINLHFVDLAKEyGTRIIGLRDGEVV 227
Cdd:PRK13657 475 GERQRLAIARALLKDPPILILDEATSALDVETeakVKAALDELMK-----GRTTFIIAHRLSTVRN-ADRILVFDNGRVV 548
|
...
gi 613390585 228 YDG 230
Cdd:PRK13657 549 ESG 551
|
|
| type_I_sec_LssB |
TIGR03375 |
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some ... |
4-231 |
8.64e-27 |
|
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274550 [Multi-domain] Cd Length: 694 Bit Score: 108.80 E-value: 8.64e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPN-GHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALlemRRN 82
Cdd:TIGR03375 464 IEFRNVSFAYPGqETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADL---RRN 540
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIFQHFNLVKRSsvLR-NVLSGRvgyhptwkmvlgLFPKEDKIkaMDALERVNILDKYNQ-----------RSDELSG 150
Cdd:TIGR03375 541 IGYVPQDPRLFYGT--LRdNIALGA------------PYADDEEI--LRAAELAGVTEFVRRhpdgldmqigeRGRSLSG 604
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 151 GQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQelGITILINLH---FVDLAkeygTRIIGLRDGEVV 227
Cdd:TIGR03375 605 GQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHrtsLLDLV----DRIIVMDNGRIV 678
|
....
gi 613390585 228 YDGP 231
Cdd:TIGR03375 679 ADGP 682
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
17-232 |
9.58e-27 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 107.87 E-value: 9.58e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 17 HVGLKNINLNIEKGEFAVIVGLSGAGKST----LLRSVNrlhdiTSGEIFIQGKSITKAHGKALLEMRRNIGMIFQHFN- 91
Cdd:PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTtglaLLRLIN-----SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNs 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 92 -LVKRSSVLRNVLSGRVGYHPTwkmvlgLFPKEDKIKAMDALERVNILDKYNQR-SDELSGGQQQRISIARALCQESEII 169
Cdd:PRK15134 374 sLNPRLNVLQIIEEGLRVHQPT------LSAAQREQQVIAVMEEVGLDPETRHRyPAEFSGGQRQRIAIARALILKPSLI 447
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 613390585 170 LADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPA 232
Cdd:PRK15134 448 ILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDC 510
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
5-223 |
1.07e-26 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 102.95 E-value: 1.07e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 5 EFKNVSkVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHD---ITSGEIFIQGKSITkahgkALLEMRR 81
Cdd:COG4136 3 SLENLT-ITLGGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSpafSASGEVLLNGRRLT-----ALPAEQR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 82 NIGMIFQ------HFnlvkrsSVLRNVLsgrvgyhptwkmvLGLFPK----EDKIKAMDALERVNILDKYNQRSDELSGG 151
Cdd:COG4136 77 RIGILFQddllfpHL------SVGENLA-------------FALPPTigraQRRARVEQALEEAGLAGFADRDPATLSGG 137
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 613390585 152 QQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGtRIIGLRD 223
Cdd:COG4136 138 QRARVALLRALLAEPRALLLDEPFSKLDAALRAQFREFVFEQIRQRGIPALLVTHDEEDAPAAG-RVLDLGN 208
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
7-227 |
1.26e-26 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 102.34 E-value: 1.26e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 7 KNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAhgkallEMRRNIGMI 86
Cdd:cd03226 3 ENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAK------ERRKSIGYV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 87 FQH--FNLVkRSSVLRNVLSGRVGYHptwkmvlglfpkEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALCQ 164
Cdd:cd03226 77 MQDvdYQLF-TDSVREELLLGLKELD------------AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLS 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 613390585 165 ESEIILADEPVASLDPLTTKQVMDDLRKInQELGITILINLHFVDLAKEYGTRIIGLRDGEVV 227
Cdd:cd03226 144 GKDLLIFDEPTSGLDYKNMERVGELIREL-AAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
3-180 |
1.46e-26 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 102.17 E-value: 1.46e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 3 QIEFKNVSKVYpNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAhgkaLLEMRRN 82
Cdd:COG4133 2 MLEAENLSCRR-GERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDA----REDYRRR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIFqHFNLVKRS-SVLRNVLSgrvgyhptWKMVLGLFPKEDKIkaMDALERVNILDKYNQRSDELSGGQQQRISIARA 161
Cdd:COG4133 77 LAYLG-HADGLKPElTVRENLRF--------WAALYGLRADREAI--DEALEAVGLAGLADLPVRQLSAGQKRRVALARL 145
|
170
....*....|....*....
gi 613390585 162 LCQESEIILADEPVASLDP 180
Cdd:COG4133 146 LLSPAPLWLLDEPFTALDA 164
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
4-250 |
1.60e-26 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 107.49 E-value: 1.60e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYP-NGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSItkAHGKaLLEMRRN 82
Cdd:TIGR02203 331 VEFRNVTFRYPgRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDL--ADYT-LASLRRQ 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIFQHFNLVKrSSVLRNVLSGRVGYHPTWKMvlglfpkEDKIKAMDALERVNILDK-----YNQRSDELSGGQQQRIS 157
Cdd:TIGR02203 408 VALVSQDVVLFN-DTIANNIAYGRTEQADRAEI-------ERALAAAYAQDFVDKLPLgldtpIGENGVLLSGGQRQRLA 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 158 IARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQelGITILINLHFVDLAkEYGTRIIGLRDGEVVYDGPASE--A 235
Cdd:TIGR02203 480 IARALLKDAPILILDEATSALDNESERLVQAALERLMQ--GRTTLVIAHRLSTI-EKADRIVVMDDGRIVERGTHNEllA 556
|
250
....*....|....*
gi 613390585 236 TDDVFSKIYGRTIKE 250
Cdd:TIGR02203 557 RNGLYAQLHNMQFRE 571
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
3-231 |
1.92e-26 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 102.57 E-value: 1.92e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 3 QIEFKNVSKVY-PNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHgkaLLEMRR 81
Cdd:cd03244 2 DIEFKNVSLRYrPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIG---LHDLRS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 82 NIGMIFQhfnlvkrSSVLrnvLSGRV-------GYHPtwkmvlglfpkEDKIkaMDALERVNILDKYNQRSDEL------ 148
Cdd:cd03244 79 RISIIPQ-------DPVL---FSGTIrsnldpfGEYS-----------DEEL--WQALERVGLKEFVESLPGGLdtvvee 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 149 -----SGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRkiNQELGITILINLHFVDLAKEYGtRIIGLRD 223
Cdd:cd03244 136 ggenlSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIR--EAFKDCTVLTIAHRLDTIIDSD-RILVLDK 212
|
....*....
gi 613390585 224 GEVV-YDGP 231
Cdd:cd03244 213 GRVVeFDSP 221
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
4-243 |
2.44e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 104.05 E-value: 2.44e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVY----PNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITK-AHGKALLE 78
Cdd:PRK13643 2 IKFEKVNYTYqpnsPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSStSKQKEIKP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 79 MRRNIGMIFQhfnlVKRSSVLRNVLSGRVGYHPtwkMVLGLFPKEDKIKAMDALERVNILDKYNQRSD-ELSGGQQQRIS 157
Cdd:PRK13643 82 VRKKVGVVFQ----FPESQLFEETVLKDVAFGP---QNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPfELSGGQMRRVA 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 158 IARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASeatd 237
Cdd:PRK13643 155 IAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS-GQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPS---- 229
|
....*.
gi 613390585 238 DVFSKI 243
Cdd:PRK13643 230 DVFQEV 235
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
1-231 |
2.70e-26 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 103.42 E-value: 2.70e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSQ--IEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLE 78
Cdd:PRK15056 2 MQQagIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 79 MRRNIGMIFQHFNLVkrssVLRNVLSGRVGyHPTWkmvLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISI 158
Cdd:PRK15056 82 YVPQSEEVDWSFPVL----VEDVVMMGRYG-HMGW---LRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFL 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 613390585 159 ARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRdGEVVYDGP 231
Cdd:PRK15056 154 ARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDE-GKTMLVSTHNLGSVTEFCDYTVMVK-GTVLASGP 224
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
4-247 |
3.31e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 103.14 E-value: 3.31e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGksITKAHGKALLEMRRNI 83
Cdd:PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSG--IDTGDFSKLQGIRKLV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHfnlvKRSSVLRNVLSGRVGYHPTwkmVLGLFPKEDKIKAMDALERVNiLDKYNQRSDE-LSGGQQQRISIARAL 162
Cdd:PRK13644 80 GIVFQN----PETQFVGRTVEEDLAFGPE---NLCLPPIEIRKRVDRALAEIG-LEKYRHRSPKtLSGGQGQCVALAGIL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 163 CQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEyGTRIIGLRDGEVVYDGPASEATDDVFSK 242
Cdd:PRK13644 152 TMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEK-GKTIVYITHNLEELHD-ADRIIVMDRGKIVLEGEPENVLSDVSLQ 229
|
....*
gi 613390585 243 IYGRT 247
Cdd:PRK13644 230 TLGLT 234
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
4-220 |
5.00e-26 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 101.36 E-value: 5.00e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVG------LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKS----ITKAHG 73
Cdd:COG4778 5 LEVENLSKTFTLHLQGgkrlpvLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRHDGgwvdLAQASP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 74 KALLEMRRN-IGMIFQHFNLVKRSSVLRNVLSGRVgyhptwkmVLGLFPKEDKIKAMDALERVNIldkynqrSDEL---- 148
Cdd:COG4778 85 REILALRRRtIGYVSQFLRVIPRVSALDVVAEPLL--------ERGVDREEARARARELLARLNL-------PERLwdlp 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 613390585 149 ----SGGQQQRISIARALCQESEIILADEPVASLDPlTTKQVMDDLrkINQelgitilinlhfvdlAKEYGTRIIG 220
Cdd:COG4778 150 patfSGGEQQRVNIARGFIADPPLLLLDEPTASLDA-ANRAVVVEL--IEE---------------AKARGTAIIG 207
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
4-247 |
5.21e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 102.52 E-value: 5.21e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVY-PNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHgkaLLEMRRN 82
Cdd:PRK13648 8 IVFKNVSFQYqSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDN---FEKLRKH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIFQH-FNLVKRSSVLRNVLSGRVGYH-PTWKMvlglfpkedKIKAMDALERVNILDKYNQRSDELSGGQQQRISIAR 160
Cdd:PRK13648 85 IGIVFQNpDNQFVGSIVKYDVAFGLENHAvPYDEM---------HRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAG 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 161 ALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEyGTRIIGLRDGEVVYDGPASeatdDVF 240
Cdd:PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPT----EIF 230
|
....*..
gi 613390585 241 SKIYGRT 247
Cdd:PRK13648 231 DHAEELT 237
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
23-255 |
5.78e-26 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 104.04 E-value: 5.78e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 23 INLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEM-RRNIGMIFQHFNLVKRSSVLRN 101
Cdd:TIGR02142 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPeKRRIGYVFQEARLFPHLSVRGN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 102 VLSGRVGYHPTWKMVlglfpKEDKIKAMDALErvNILDKYNQRsdeLSGGQQQRISIARALCQESEIILADEPVASLDPL 181
Cdd:TIGR02142 96 LRYGMKRARPSERRI-----SFERVIELLGIG--HLLGRLPGR---LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDP 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 182 TTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE----------ATDDVFSKIYGRTIKED 251
Cdd:TIGR02142 166 RKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEvwaspdlpwlAREDQGSLIEGVVAEHD 245
|
....
gi 613390585 252 EKLG 255
Cdd:TIGR02142 246 QHYG 249
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
22-234 |
7.04e-26 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 103.64 E-value: 7.04e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 22 NINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGK----SitkAHGKALLEMRRNIGMIFQHFNLVKRSS 97
Cdd:COG4148 17 DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEvlqdS---ARGIFLPPHRRRIGYVFQEARLFPHLS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 98 VLRNVlsgRVGYHPTWKmvlglfpKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILADEPVAS 177
Cdd:COG4148 94 VRGNL---LYGRKRAPR-------AERRISFDEVVELLGIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAA 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 613390585 178 LDpLTTKQ-VMDDLRKINQELGITILINLHFVD----LAkeygTRIIGLRDGEVVYDGPASE 234
Cdd:COG4148 164 LD-LARKAeILPYLERLRDELDIPILYVSHSLDevarLA----DHVVLLEQGRVVASGPLAE 220
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
16-241 |
1.06e-25 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 101.71 E-value: 1.06e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 16 GHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSG-----EIFIQGKSITKAhgKALLEMRRNIGMIFQHF 90
Cdd:PRK14271 33 GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGyrysgDVLLGGRSIFNY--RDVLEFRRRVGMLFQRP 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 91 NLVKRSsVLRNVLSGRVGYHptwkmvlgLFP-KEDKIKAMDALERVNILDKYNQR-SD---ELSGGQQQRISIARALCQE 165
Cdd:PRK14271 111 NPFPMS-IMDNVLAGVRAHK--------LVPrKEFRGVAQARLTEVGLWDAVKDRlSDspfRLSGGQQQLLCLARTLAVN 181
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 613390585 166 SEIILADEPVASLDPLTTKQVMDDLRKINQELgiTILINLHFVDLAKEYGTRIIGLRDGEVVYDGPaseaTDDVFS 241
Cdd:PRK14271 182 PEVLLLDEPTSALDPTTTEKIEEFIRSLADRL--TVIIVTHNLAQAARISDRAALFFDGRLVEEGP----TEQLFS 251
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
4-234 |
1.12e-25 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 101.02 E-value: 1.12e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVY-PNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALlemRRN 82
Cdd:cd03252 1 ITFEHVRFRYkPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWL---RRQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIFQHFNLVKRsSVLRNVLSGRVGyhptwkmvlglFPKEDKIKA---MDALERVNIL-DKYNQ----RSDELSGGQQQ 154
Cdd:cd03252 78 VGVVLQENVLFNR-SIRDNIALADPG-----------MSMERVIEAaklAGAHDFISELpEGYDTivgeQGAGLSGGQRQ 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 155 RISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQelGITILINLHFVDLAKEyGTRIIGLRDGEVVYDGPASE 234
Cdd:cd03252 146 RIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA--GRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDE 222
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
20-234 |
1.25e-25 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 103.77 E-value: 1.25e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALlemRRNIGMIFQH----FNLVKR 95
Cdd:PRK09536 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAA---SRRVASVPQDtslsFEFDVR 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 96 SSVlrnvlsgRVGYHPTwkmvLGLFPK--EDKIKAMD-ALERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILAD 172
Cdd:PRK09536 96 QVV-------EMGRTPH----RSRFDTwtETDRAAVErAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLD 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 613390585 173 EPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE 234
Cdd:PRK09536 165 EPTASLDINHQVRTLELVRRLVDD-GKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPAD 225
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
4-206 |
1.93e-25 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 100.88 E-value: 1.93e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDItSGEIFIQGKsiTKAHGKALLE----- 78
Cdd:PRK14258 8 IKVNNLSFYYDTQKI-LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNEL-ESEVRVEGR--VEFFNQNIYErrvnl 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 79 --MRRNIGMIFQHFNLVKRSsVLRNVLSGR--VGYHPTWKMVlGLFpkEDKIKAMDALERVNilDKYNQRSDELSGGQQQ 154
Cdd:PRK14258 84 nrLRRQVSMVHPKPNLFPMS-VYDNVAYGVkiVGWRPKLEID-DIV--ESALKDADLWDEIK--HKIHKSALDLSGGQQQ 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 613390585 155 RISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLH 206
Cdd:PRK14258 158 RLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSH 209
|
|
| SapF |
COG4167 |
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms]; |
1-241 |
4.02e-25 |
|
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];
Pssm-ID: 443328 [Multi-domain] Cd Length: 265 Bit Score: 99.91 E-value: 4.02e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSQIEFKNVSKVYPNgHVGL---------KNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKA 71
Cdd:COG4167 2 SALLEVRNLSKTFKY-RTGLfrrqqfeavKPVSFTLEAGQTLAIIGENGSGKSTLAKMLAGIIEPTSGEILINGHKLEYG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 72 HGKalleMR-RNIGMIFQHFNlvkrSSVLRNVLSGRVGYHPTwKMVLGLFPKEDKIKAMDALERVNIL-DKYNQRSDELS 149
Cdd:COG4167 81 DYK----YRcKHIRMIFQDPN----TSLNPRLNIGQILEEPL-RLNTDLTAEEREERIFATLRLVGLLpEHANFYPHMLS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 150 GGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYD 229
Cdd:COG4167 152 SGQKQRVALARALILQPKIIIADEALAALDMSVRSQIINLMLELQEKLGISYIYVSQHLGIVKHISDKVLVMHQGEVVEY 231
|
250
....*....|..
gi 613390585 230 GPaseaTDDVFS 241
Cdd:COG4167 232 GK----TAEVFA 239
|
|
| type_I_sec_HlyB |
TIGR01846 |
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in ... |
4-234 |
1.18e-24 |
|
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273831 [Multi-domain] Cd Length: 694 Bit Score: 102.51 E-value: 1.18e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVY-PNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALlemRRN 82
Cdd:TIGR01846 456 ITFENIRFRYaPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWL---RRQ 532
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIFQHFNLVKRSsVLRNVLSGRVGyhptwkmvlglFPKEDKIKAMD---ALERVNILDK-YNQRSDE----LSGGQQQ 154
Cdd:TIGR01846 533 MGVVLQENVLFSRS-IRDNIALCNPG-----------APFEHVIHAAKlagAHDFISELPQgYNTEVGEkganLSGGQRQ 600
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 155 RISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQelGITILINLHFVDLAKEyGTRIIGLRDGEVVYDGPASE 234
Cdd:TIGR01846 601 RIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICR--GRTVIIIAHRLSTVRA-CDRIIVLEKGQIAESGRHEE 677
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
4-242 |
1.36e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 99.10 E-value: 1.36e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHV-GLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRL---HDITSGEIFIQGKSITKahgKALLEM 79
Cdd:PRK13640 6 VEFKHVSFTYPDSKKpALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLllpDDNPNSKITVDGITLTA---KTVWDI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 80 RRNIGMIFQhfnlvkrssvlrNVLSGRVGYHPTWKMVLGL----FPKEDKIKAM-DALERVNILDKYNQRSDELSGGQQQ 154
Cdd:PRK13640 83 REKVGIVFQ------------NPDNQFVGATVGDDVAFGLenraVPRPEMIKIVrDVLADVGMLDYIDSEPANLSGGQKQ 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 155 RISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAkEYGTRIIGLRDGEVVydgpASE 234
Cdd:PRK13640 151 RVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-NMADQVLVLDDGKLL----AQG 225
|
....*...
gi 613390585 235 ATDDVFSK 242
Cdd:PRK13640 226 SPVEIFSK 233
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
8-244 |
1.85e-24 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 97.61 E-value: 1.85e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 8 NVSKVYPNGHVgLKNINLNIEKGEfavIVGL---SGAGKSTLLRSVNRLHDITSGEIFIQGKSITKA--HGKAllemRRN 82
Cdd:cd03218 5 NLSKRYGKRKV-VNGVSLSVKQGE---IVGLlgpNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLpmHKRA----RLG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIFQHFNLVKRSSVLRNVLSgrvgyhptwkmVLGLFPKEDKI---KAMDALERVNILDKYNQRSDELSGGQQQRISIA 159
Cdd:cd03218 77 IGYLPQEASIFRKLTVEENILA-----------VLEIRGLSKKEreeKLEELLEEFHITHLRKSKASSLSGGERRRVEIA 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 160 RALCQESEIILADEPVASLDPLTTKqvmdDLRKINQEL---GITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE-A 235
Cdd:cd03218 146 RALATNPKFLLLDEPFAGVDPIAVQ----DIQKIIKILkdrGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEiA 221
|
....*....
gi 613390585 236 TDDVFSKIY 244
Cdd:cd03218 222 ANELVRKVY 230
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
4-230 |
2.05e-24 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 96.90 E-value: 2.05e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHgkallEMRRNI 83
Cdd:cd03268 1 LKTNDLTKTYGKKRV-LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNI-----EALRRI 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNVLSGRVGYhptwkmvlgLFPKEDkikAMDALERVNILDKYNQRSDELSGGQQQRISIARALC 163
Cdd:cd03268 75 GALIEAPGFYPNLTARENLRLLARLL---------GIRKKR---IDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALL 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 613390585 164 QESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGEVVYDG 230
Cdd:cd03268 143 GNPDLLILDEPTNGLDPDGIKELRELILSLRDQ-GITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| MsbA_rel |
TIGR02204 |
ABC transporter, permease/ATP-binding protein; This protein is related to a Proteobacterial ... |
3-234 |
3.57e-24 |
|
ABC transporter, permease/ATP-binding protein; This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Pssm-ID: 131259 [Multi-domain] Cd Length: 576 Bit Score: 100.93 E-value: 3.57e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 3 QIEFKNVSKVYPN--GHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKallEMR 80
Cdd:TIGR02204 337 EIEFEQVNFAYPArpDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPA---ELR 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 81 RNIGMIFQHFNLVKrSSVLRNVLSGRVgyHPTWKMVlglfpkEDKIKAMDALERVNILDK-YN----QRSDELSGGQQQR 155
Cdd:TIGR02204 414 ARMALVPQDPVLFA-ASVMENIRYGRP--DATDEEV------EAAARAAHAHEFISALPEgYDtylgERGVTLSGGQRQR 484
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 156 ISIARALCQESEIILADEPVASLDPLT---TKQVMDDLRKinqelGITILINLHFVDLAKEyGTRIIGLRDGEVVYDGPA 232
Cdd:TIGR02204 485 IAIARAILKDAPILLLDEATSALDAESeqlVQQALETLMK-----GRTTLIIAHRLATVLK-ADRIVVMDQGRIVAQGTH 558
|
..
gi 613390585 233 SE 234
Cdd:TIGR02204 559 AE 560
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
4-192 |
3.58e-24 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 100.67 E-value: 3.58e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNG-HVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALlemRRN 82
Cdd:PRK11160 339 LTLNNVSFTYPDQpQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAAL---RQA 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIFQHFNLVkrSSVLRNVLsgrvgyhptwkmVLGLfPKEDKIKAMDALERVNiLDKYNQrSDE------------LSG 150
Cdd:PRK11160 416 ISVVSQRVHLF--SATLRDNL------------LLAA-PNASDEALIEVLQQVG-LEKLLE-DDKglnawlgeggrqLSG 478
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 613390585 151 GQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRK 192
Cdd:PRK11160 479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE 520
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
6-230 |
4.28e-24 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 96.28 E-value: 4.28e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 6 FKNVSKVYpnghVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHgkalLEMRRNIGM 85
Cdd:cd03266 11 FRDVKKTV----QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEP----AEARRRLGF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 86 IFQHFNLVKRSSVLRNVLSgRVGYHptwkmvlGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALCQE 165
Cdd:cd03266 83 VSDSTGLYDRLTARENLEY-FAGLY-------GLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHD 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 613390585 166 SEIILADEPVASLDPLTTKQVMDDLRKInQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDG 230
Cdd:cd03266 155 PPVLLLDEPTTGLDVMATRALREFIRQL-RALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-227 |
7.24e-24 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 96.10 E-value: 7.24e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSQIEFKNVSKVYpnGHV-GLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALleM 79
Cdd:PRK11614 3 KVMLSFDKVSAHY--GKIqALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKI--M 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 80 RRNIGMIFQHFNLVKRSSVLRNVLSG-----RVGYHPTWKMVLGLFPKedkikamdalervnILDKYNQRSDELSGGQQQ 154
Cdd:PRK11614 79 REAVAIVPEGRRVFSRMTVEENLAMGgffaeRDQFQERIKWVYELFPR--------------LHERRIQRAGTMSGGEQQ 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 613390585 155 RISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGEVV 227
Cdd:PRK11614 145 MLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ-GMTIFLVEQNANQALKLADRGYVLENGHVV 216
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
4-250 |
8.33e-24 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 99.62 E-value: 8.33e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPnGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRL--HDITSGEIFIQGKSItKAHGKALLEmRR 81
Cdd:PRK13549 6 LEMKNITKTFG-GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVypHGTYEGEIIFEGEEL-QASNIRDTE-RA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 82 NIGMIFQHFNLVKRSSVLRNVL-------SGRVGYHptwKMVLglfpkedkiKAMDALERVNILDKYNQRSDELSGGQQQ 154
Cdd:PRK13549 83 GIAIIHQELALVKELSVLENIFlgneitpGGIMDYD---AMYL---------RAQKLLAQLKLDINPATPVGNLGLGQQQ 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 155 RISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE 234
Cdd:PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAH-GIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAG 229
|
250
....*....|....*..
gi 613390585 235 -ATDDVFSKIYGRTIKE 250
Cdd:PRK13549 230 mTEDDIITMMVGRELTA 246
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
1-206 |
8.34e-24 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 96.31 E-value: 8.34e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSQIEfkNVSKVYPnGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLrsvnrlhDITSGEIFIQGKSITKAhGKALLEMR 80
Cdd:PRK11248 1 MLQIS--HLYADYG-GKPALEDINLTLESGELLVVLGPSGCGKTTLL-------NLIAGFVPYQHGSITLD-GKPVEGPG 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 81 RNIGMIFQHFNLVKRSSVLRNVLSGrvgyhptwkMVLGLFPKEDKI-KAMDALERVNILDKYNQRSDELSGGQQQRISIA 159
Cdd:PRK11248 70 AERGVVFQNEGLLPWRNVQDNVAFG---------LQLAGVEKMQRLeIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIA 140
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 613390585 160 RALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLH 206
Cdd:PRK11248 141 RALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITH 187
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
20-234 |
1.08e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 96.70 E-value: 1.08e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITkahGKALLEMRRNIGMIFQH-FNLVKRSSV 98
Cdd:PRK13642 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLT---AENVWNLRRKIGMVFQNpDNQFVGATV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 99 LRNVLSGrvgyhptwkMVLGLFPKEDKIKAMD-ALERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILADEPVAS 177
Cdd:PRK13642 100 EDDVAFG---------MENQGIPREEMIKRVDeALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSM 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 613390585 178 LDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEyGTRIIGLRDGEVVYDGPASE 234
Cdd:PRK13642 171 LDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSE 226
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
15-211 |
1.11e-23 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 94.22 E-value: 1.11e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 15 NGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGeifiqgkSITKAHGkallemrRNIGMIFQHFNLVK 94
Cdd:NF040873 3 GGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSG-------TVRRAGG-------ARVAYVPQRSEVPD 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 95 R--SSVLRNVLSGRVGYHPTWkmvlGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILAD 172
Cdd:NF040873 69 SlpLTVRDLVAMGRWARRGLW----RRLTRDDRAAVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLD 144
|
170 180 190
....*....|....*....|....*....|....*....
gi 613390585 173 EPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLA 211
Cdd:NF040873 145 EPTTGLDAESRERIIALLAEEHAR-GATVVVVTHDLELV 182
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
20-231 |
2.73e-23 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 98.39 E-value: 2.73e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMRRNIGMIFQ--HFNLVKRSS 97
Cdd:PRK10261 340 VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQdpYASLDPRQT 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 98 VlrnvlsgrvGYHPTWKM-VLGLFPKEDKIKAMD-ALERVNILDKYNQR-SDELSGGQQQRISIARALCQESEIILADEP 174
Cdd:PRK10261 420 V---------GDSIMEPLrVHGLLPGKAAAARVAwLLERVGLLPEHAWRyPHEFSGGQRQRICIARALALNPKVIIADEA 490
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 613390585 175 VASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGP 231
Cdd:PRK10261 491 VSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGP 547
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
22-238 |
3.46e-23 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 94.67 E-value: 3.46e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 22 NINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMrrniGMI--FQHFNLVKRSSVL 99
Cdd:PRK11300 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM----GVVrtFQHVRLFREMTVI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 100 RNVLsgrVGYHPTWKMVL--GLFP--------KEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALCQESEII 169
Cdd:PRK11300 99 ENLL---VAQHQQLKTGLfsGLLKtpafrraeSEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEIL 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 613390585 170 LADEPVASLDPLTT---KQVMDDLRKinqELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASEATDD 238
Cdd:PRK11300 176 MLDEPAAGLNPKETkelDELIAELRN---EHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNN 244
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
4-234 |
7.13e-23 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 96.06 E-value: 7.13e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYpNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKahgkaLLEMRRNI 83
Cdd:PRK11607 20 LEIRNLTKSF-DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSH-----VPPYQRPI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNVlsgrvgyhptwkmVLGLfpKEDKI-------KAMDALERVNILDKYNQRSDELSGGQQQRI 156
Cdd:PRK11607 94 NMMFQSYALFPHMTVEQNI-------------AFGL--KQDKLpkaeiasRVNEMLGLVHMQEFAKRKPHQLSGGQRQRV 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 613390585 157 SIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE 234
Cdd:PRK11607 159 ALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEE 236
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
4-230 |
9.28e-23 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 91.61 E-value: 9.28e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYP-NGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGkallEMRRN 82
Cdd:cd03247 1 LSINNVSFSYPeQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEK----ALSSL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIFQHFNLVkrSSVLRNVLSGRvgyhptwkmvlglfpkedkikamdalervnildkynqrsdeLSGGQQQRISIARAL 162
Cdd:cd03247 77 ISVLNQRPYLF--DTTLRNNLGRR-----------------------------------------FSGGERQRLALARIL 113
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 613390585 163 CQESEIILADEPVASLDPLTTKQVmddLRKINQEL-GITILINLHFVdLAKEYGTRIIGLRDGEVVYDG 230
Cdd:cd03247 114 LQDAPIVLLDEPTVGLDPITERQL---LSLIFEVLkDKTLIWITHHL-TGIEHMDKILFLENGKIIMQG 178
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
4-227 |
9.67e-23 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 96.81 E-value: 9.67e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALlemRRNI 83
Cdd:COG5265 358 VRFENVSFGYDPERPILKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRDVTQASL---RAAI 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQH---FNlvkrSSVLRNVLSGRVGyhptwkmvlglfPKEDKIKAmdALERVNILD-------KYNQRSDE----LS 149
Cdd:COG5265 435 GIVPQDtvlFN----DTIAYNIAYGRPD------------ASEEEVEA--AARAAQIHDfieslpdGYDTRVGErglkLS 496
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 150 GGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQelGITILINLH----FVDlAKEygtrIIGLRDGE 225
Cdd:COG5265 497 GGEKQRVAIARTLLKNPPILIFDEATSALDSRTERAIQAALREVAR--GRTTLVIAHrlstIVD-ADE----ILVLEAGR 569
|
..
gi 613390585 226 VV 227
Cdd:COG5265 570 IV 571
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
20-216 |
2.26e-22 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 93.88 E-value: 2.26e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMRRNIGMIFQH----FNLVKR 95
Cdd:PRK11308 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNpygsLNPRKK 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 96 -SSVLRNVLsgrvgyhptwKMVLGLFPKEDKIKAMDALERVNILDKYNQRSDEL-SGGQQQRISIARALCQESEIILADE 173
Cdd:PRK11308 111 vGQILEEPL----------LINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMfSGGQRQRIAIARALMLDPDVVVADE 180
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 613390585 174 PVASLDPLTTKQVMddlrkinqelgitiliNLhFVDLAKEYGT 216
Cdd:PRK11308 181 PVSALDVSVQAQVL----------------NL-MMDLQQELGL 206
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
4-179 |
2.41e-22 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 95.47 E-value: 2.41e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNG-HVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAhgkALLEMRRN 82
Cdd:PRK11176 342 IEFRNVTFTYPGKeVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDY---TLASLRNQ 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIFQHFNLVKrSSVLRNVLSGRVGYhptwkmvlglFPKEDKIKAMDALERVNILDKYNQRSDE--------LSGGQQQ 154
Cdd:PRK11176 419 VALVSQNVHLFN-DTIANNIAYARTEQ----------YSREQIEEAARMAYAMDFINKMDNGLDTvigengvlLSGGQRQ 487
|
170 180
....*....|....*....|....*
gi 613390585 155 RISIARALCQESEIILADEPVASLD 179
Cdd:PRK11176 488 RIAIARALLRDSPILILDEATSALD 512
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1-226 |
2.53e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 92.87 E-value: 2.53e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSQIEFKNVSKVYPNG--HVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKahgKALLE 78
Cdd:PRK13650 2 SNIIEVKNLTFKYKEDqeKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTE---ENVWD 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 79 MRRNIGMIFQH-FNLVKRSSVLRNVLSGRVGYhptwkmvlGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRIS 157
Cdd:PRK13650 79 IRHKIGMVFQNpDNQFVGATVEDDVAFGLENK--------GIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 613390585 158 IARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKeYGTRIIGLRDGEV 226
Cdd:PRK13650 151 IAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQV 218
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
22-227 |
9.60e-22 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 93.62 E-value: 9.60e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 22 NINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHD-----ITSGEIFIQGKSITKAHGKALLEMRRN-IGMIFQH------ 89
Cdd:PRK15134 27 DVSLQIEAGETLALVGESGSGKSVTALSILRLLPsppvvYPSGDIRFHGESLLHASEQTLRGVRGNkIAMIFQEpmvsln 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 90 --FNLVKRssvLRNVLSgrvgyhptwkMVLGLFPKEDKIKAMDALERVNILDKYNQRSD---ELSGGQQQRISIARALCQ 164
Cdd:PRK15134 107 plHTLEKQ---LYEVLS----------LHRGMRREAARGEILNCLDRVGIRQAAKRLTDyphQLSGGERQRVMIAMALLT 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 613390585 165 ESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVV 227
Cdd:PRK15134 174 RPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1-234 |
1.20e-21 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 90.09 E-value: 1.20e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSQIEFKNVSKVYPNGHVgLKNINLNIEKGEfavIVGL---SGAGKSTLLRSVNRLHDITSGEIFIQGKSITKA--HGKA 75
Cdd:COG1137 1 MMTLEAENLVKSYGKRTV-VKDVSLEVNQGE---IVGLlgpNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLpmHKRA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 76 llemRRNIGMIFQHFNLVKRSSVLRNVLsgrvgyhptwkMVL---GLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQ 152
Cdd:COG1137 77 ----RLGIGYLPQEASIFRKLTVEDNIL-----------AVLelrKLSKKEREERLEELLEEFGITHLRKSKAYSLSGGE 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 153 QQRISIARALCQESEIILADEPVASLDPLTTKqvmdDLRKINQEL---GITILINLHFV-------DLAkeYgtrIIglR 222
Cdd:COG1137 142 RRRVEIARALATNPKFILLDEPFAGVDPIAVA----DIQKIIRHLkerGIGVLITDHNVretlgicDRA--Y---II--S 210
|
250
....*....|..
gi 613390585 223 DGEVVYDGPASE 234
Cdd:COG1137 211 EGKVLAEGTPEE 222
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
2-230 |
1.46e-21 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 93.27 E-value: 1.46e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 2 SQIEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALlemRR 81
Cdd:TIGR01193 472 GDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTL---RQ 548
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 82 NIGMIFQHfNLVKRSSVLRNVLsgrvgyhptwkmvLGLFPK--EDKIKAmdALERVNILDKYNQ-----------RSDEL 148
Cdd:TIGR01193 549 FINYLPQE-PYIFSGSILENLL-------------LGAKENvsQDEIWA--ACEIAEIKDDIENmplgyqtelseEGSSI 612
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 149 SGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElgiTILINLHFVDLAKEyGTRIIGLRDGEVVY 228
Cdd:TIGR01193 613 SGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDK---TIIFVAHRLSVAKQ-SDKIIVLDHGKIIE 688
|
..
gi 613390585 229 DG 230
Cdd:TIGR01193 689 QG 690
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
8-234 |
1.75e-21 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 90.11 E-value: 1.75e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 8 NVSKVY--PNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITkaHGKAL-----LEMR 80
Cdd:PRK14246 12 NISRLYlyINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLY--FGKDIfqidaIKLR 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 81 RNIGMIFQHFNLVKRSSVLRNVLSGRVGYhptwkmvlGLFPKEDKIKAMD-ALERV----NILDKYNQRSDELSGGQQQR 155
Cdd:PRK14246 90 KEVGMVFQQPNPFPHLSIYDNIAYPLKSH--------GIKEKREIKKIVEeCLRKVglwkEVYDRLNSPASQLSGGQQQR 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 613390585 156 ISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElgITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE 234
Cdd:PRK14246 162 LTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNE--IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNE 238
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
4-226 |
1.84e-21 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 88.04 E-value: 1.84e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNG-HVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHgkaLLEMRRN 82
Cdd:cd03246 1 LEVENVSFRYPGAePPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWD---PNELGDH 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIFQHFNLvkrssvlrnvLSGRVgyhptwkmvlglfpkedkikamdaleRVNIldkynqrsdeLSGGQQQRISIARAL 162
Cdd:cd03246 78 VGYLPQDDEL----------FSGSI--------------------------AENI----------LSGGQRQRLGLARAL 111
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 613390585 163 CQESEIILADEPVASLDPLTTKQVMDDLRKInQELGITILINLHFVDLAKEyGTRIIGLRDGEV 226
Cdd:cd03246 112 YGNPRILVLDEPNSHLDVEGERALNQAIAAL-KAAGATRIVIAHRPETLAS-ADRILVLEDGRV 173
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
8-238 |
1.87e-21 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 89.89 E-value: 1.87e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 8 NVSKVYPNGhVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLE------MRR 81
Cdd:TIGR02323 8 GLSKSYGGG-KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEaerrrlMRT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 82 NIGMIFQHfnlvKRSSVLRNVLSG-RVGYHPtwkMVLGLFPKED-KIKAMDALERVNI-LDKYNQRSDELSGGQQQRISI 158
Cdd:TIGR02323 87 EWGFVHQN----PRDGLRMRVSAGaNIGERL---MAIGARHYGNiRATAQDWLEEVEIdPTRIDDLPRAFSGGMQQRLQI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 159 ARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASEATDD 238
Cdd:TIGR02323 160 ARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDD 239
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
7-250 |
2.72e-21 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 92.48 E-value: 2.72e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 7 KNVSKVYPnGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEmrRNIGMI 86
Cdd:PRK10982 2 SNISKSFP-GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALE--NGISMV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 87 FQHFNLVKRSSVLRNVLSGRvgyHPTwkmvLGLFPKEDKI----KAMdaLERVNILDKYNQRSDELSGGQQQRISIARAL 162
Cdd:PRK10982 79 HQELNLVLQRSVMDNMWLGR---YPT----KGMFVDQDKMyrdtKAI--FDELDIDIDPRAKVATLSVSQMQMIEIAKAF 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 163 CQESEIILADEPVASldpLTTKQVmDDLRKINQEL---GITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASEAT-DD 238
Cdd:PRK10982 150 SYNAKIVIMDEPTSS---LTEKEV-NHLFTIIRKLkerGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTmDK 225
|
250
....*....|..
gi 613390585 239 VFSKIYGRTIKE 250
Cdd:PRK10982 226 IIAMMVGRSLTQ 237
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
4-230 |
4.09e-21 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 91.83 E-value: 4.09e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLrsvNRLhditSGEIFIQGkSItKAHGKAL--LEM-- 79
Cdd:PRK11174 350 IEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLL---NAL----LGFLPYQG-SL-KINGIELreLDPes 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 80 -RRNIGMIFQHFNLVKrSSVLRNVLSGRvgyhptwkmvlglfPKEDKIKAMDALERVNILDKYNQ-----------RSDE 147
Cdd:PRK11174 421 wRKHLSWVGQNPQLPH-GTLRDNVLLGN--------------PDASDEQLQQALENAWVSEFLPLlpqgldtpigdQAAG 485
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 148 LSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQelGITILINLHFVDLAKEYGTrIIGLRDGEVV 227
Cdd:PRK11174 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR--RQTTLMVTHQLEDLAQWDQ-IWVMQDGQIV 562
|
...
gi 613390585 228 YDG 230
Cdd:PRK11174 563 QQG 565
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
7-230 |
4.21e-21 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 92.38 E-value: 4.21e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 7 KNVSKVY-PNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAhgkaLLEMRRNIGM 85
Cdd:TIGR01257 932 KNLVKIFePSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETN----LDAVRQSLGM 1007
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 86 IFQHFNLVKRSSVLRNVLsgrvgyhpTWKMVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALCQE 165
Cdd:TIGR01257 1008 CPQHNILFHHLTVAEHIL--------FYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGD 1079
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 613390585 166 SEIILADEPVASLDPLTTKQVMDDLRKINQelGITILINLHFVDLAKEYGTRIIGLRDGEVVYDG 230
Cdd:TIGR01257 1080 AKVVVLDEPTSGVDPYSRRSIWDLLLKYRS--GRTIIMSTHHMDEADLLGDRIAIISQGRLYCSG 1142
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
4-230 |
4.81e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 89.91 E-value: 4.81e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVY----PNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRL-----HDITSGEIFIQGKSITKAHG- 73
Cdd:PRK13631 22 LRVKNLYCVFdekqENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLikskyGTIQVGDIYIGDKKNNHELIt 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 74 -------KALLEMRRNIGMIFQ--HFNLVKrSSVLRNVLSGRVGyhptwkmvLGLFPKEDKIKAMDALERVNILDKYNQR 144
Cdd:PRK13631 102 npyskkiKNFKELRRRVSMVFQfpEYQLFK-DTIEKDIMFGPVA--------LGVKKSEAKKLAKFYLNKMGLDDSYLER 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 145 SD-ELSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRD 223
Cdd:PRK13631 173 SPfGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN-NKTVFVITHTMEHVLEVADEVIVMDK 251
|
....*..
gi 613390585 224 GEVVYDG 230
Cdd:PRK13631 252 GKILKTG 258
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
4-248 |
1.02e-20 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 90.65 E-value: 1.02e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYpNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRL--HDITSGEIFIQGKSItKAHGKALLEmRR 81
Cdd:TIGR02633 2 LEMKGIVKTF-GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVypHGTWDGEIYWSGSPL-KASNIRDTE-RA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 82 NIGMIFQHFNLVKRSSVLRNVLSGRVGYHPTWKMVLGLFpkedKIKAMDALERVNILDKYNQRS-DELSGGQQQRISIAR 160
Cdd:TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAM----YLRAKNLLRELQLDADNVTRPvGDYGGGQQQLVEIAK 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 161 ALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE-ATDDV 239
Cdd:TIGR02633 155 ALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAH-GVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTmSEDDI 233
|
....*....
gi 613390585 240 FSKIYGRTI 248
Cdd:TIGR02633 234 ITMMVGREI 242
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
1-230 |
1.27e-20 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 86.45 E-value: 1.27e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSQIEFKNVSKVYPNGHVG-----LKNINLNIEKGEFAVIVGLSGAGKSTLLRSV-NRLHD-ITSGEIFIQGKSITKAhg 73
Cdd:cd03213 1 GVTLSFRNLTVTVKSSPSKsgkqlLKNVSGKAKPGELTAIMGPSGAGKSTLLNALaGRRTGlGVSGEVLINGRPLDKR-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 74 kallEMRRNIGMIFQHFNLvkrssvlrnvlsgrvgyHPTwkmvlgLFPKEdkikamdALErvnildkYNQRSDELSGGQQ 153
Cdd:cd03213 79 ----SFRKIIGYVPQDDIL-----------------HPT------LTVRE-------TLM-------FAAKLRGLSGGER 117
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 154 QRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLH--------FVDlakeygtRIIGLRDGE 225
Cdd:cd03213 118 KRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT-GRTIICSIHqpsseifeLFD-------KLLLLSQGR 189
|
....*
gi 613390585 226 VVYDG 230
Cdd:cd03213 190 VIYFG 194
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
22-208 |
1.81e-20 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 87.51 E-value: 1.81e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 22 NINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMRRNIGMIFQHFNLVKRSSVLRN 101
Cdd:PRK11831 25 NISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDN 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 102 VlsgrvgyhpTWKMVLGLFPKEDKIKA--MDALERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILADEPVASLD 179
Cdd:PRK11831 105 V---------AYPLREHTQLPAPLLHStvMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQD 175
|
170 180
....*....|....*....|....*....
gi 613390585 180 PLTTKQVMDDLRKINQELGITILINLHFV 208
Cdd:PRK11831 176 PITMGVLVKLISELNSALGVTCVVVSHDV 204
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
4-243 |
3.31e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 87.37 E-value: 3.31e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVY----PNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIqGKSITKAHGKALLE- 78
Cdd:PRK13645 7 IILDNVSYTYakktPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIV-GDYAIPANLKKIKEv 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 79 --MRRNIGMIFQhfnlVKRSSVLRNVLSGRVGYHPtwkMVLGLFPKEDKIKAMDALERVNILDKYNQRSD-ELSGGQQQR 155
Cdd:PRK13645 86 krLRKEIGLVFQ----FPEYQLFQETIEKDIAFGP---VNLGENKQEAYKKVPELLKLVQLPEDYVKRSPfELSGGQKRR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 156 ISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE- 234
Cdd:PRK13645 159 VALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEi 238
|
250
....*....|
gi 613390585 235 -ATDDVFSKI 243
Cdd:PRK13645 239 fSNQELLTKI 248
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
13-231 |
9.44e-20 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 87.85 E-value: 9.44e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 13 YP-NGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAhgkALLEMRRNIGMIFQHFN 91
Cdd:PRK10789 323 YPqTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKL---QLDSWRSRLAVVSQTPF 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 92 LVKrSSVLRNVLSGRVGyhptwkmvlglfPKEDKIKAMDALERV--NIL-------DKYNQRSDELSGGQQQRISIARAL 162
Cdd:PRK10789 400 LFS-DTVANNIALGRPD------------ATQQEIEHVARLASVhdDILrlpqgydTEVGERGVMLSGGQKQRISIARAL 466
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 613390585 163 CQESEIILADEPVASLDPLTTKQVMDDLRKINQelGITILINLHFVDLAKEyGTRIIGLRDGEVVYDGP 231
Cdd:PRK10789 467 LLNAEILILDDALSAVDGRTEHQILHNLRQWGE--GRTVIISAHRLSALTE-ASEILVMQHGHIAQRGN 532
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
20-234 |
9.67e-20 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 85.83 E-value: 9.67e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHgKALLEMRRNIGMIFQH-----FNLVK 94
Cdd:PRK13638 17 LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSK-RGLLALRQQVATVFQDpeqqiFYTDI 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 95 RSSV---LRNvlsgrvgyhptwkmvLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILA 171
Cdd:PRK13638 96 DSDIafsLRN---------------LGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 613390585 172 DEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE 234
Cdd:PRK13638 161 DEPTAGLDPAGRTQMIAIIRRIVAQ-GNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGE 222
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
1-248 |
1.88e-19 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 86.89 E-value: 1.88e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSQIEFKNVSKVYPnGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMr 80
Cdd:PRK11288 2 SPYLSFDGIGKTFP-GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 81 rNIGMIFQHFNLVKRSSVLRNVLSGRVgyhPTwkmVLGLFPKEDKIK-AMDALERVNILDKYNQRSDELSGGQQQRISIA 159
Cdd:PRK11288 80 -GVAIIYQELHLVPEMTVAENLYLGQL---PH---KGGIVNRRLLNYeAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 160 RALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASEAT--D 237
Cdd:PRK11288 153 KALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAE-GRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVdrD 231
|
250
....*....|.
gi 613390585 238 DVFSKIYGRTI 248
Cdd:PRK11288 232 QLVQAMVGREI 242
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
20-230 |
1.95e-19 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 83.86 E-value: 1.95e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSV-NRLHD--ITSGEIFIQGKSITKAhgkallEMRRNIGMIFQHFNLVKRS 96
Cdd:cd03234 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAIsGRVEGggTTSGQILFNGQPRKPD------QFQKCVAYVRQDDILLPGL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 97 SV---LRNVLSGRVGYHptwkmvlglfpKEDKIKAMDA----LERVNILDKYNQRSDELSGGQQQRISIARALCQESEII 169
Cdd:cd03234 97 TVretLTYTAILRLPRK-----------SSDAIRKKRVedvlLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVL 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 613390585 170 LADEPVASLDPLTTKQVMDDLRKINQElGITILINLH------FvdlakEYGTRIIGLRDGEVVYDG 230
Cdd:cd03234 166 ILDEPTSGLDSFTALNLVSTLSQLARR-NRIVILTIHqprsdlF-----RLFDRILLLSSGEIVYSG 226
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
4-245 |
3.10e-19 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 85.27 E-value: 3.10e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYpNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITkahGKALLEmRRNI 83
Cdd:PRK13536 42 IDLAGVSKSY-GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVP---ARARLA-RARI 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNVLS-GRVgyhptwkmvLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARAL 162
Cdd:PRK13536 117 GVVPQFDNLDLEFTVRENLLVfGRY---------FGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARAL 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 163 CQESEIILADEPVASLDPLTTKQVMDDLRKInQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASEATDDVFS- 241
Cdd:PRK13536 188 INDPQLLILDEPTTGLDPHARHLIWERLRSL-LARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIGc 266
|
....*..
gi 613390585 242 ---KIYG 245
Cdd:PRK13536 267 qviEIYG 273
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
4-225 |
3.42e-19 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 82.52 E-value: 3.42e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNG----HVGLKNINLNIEKGEFAVIVGLSGAGKSTLLrsvnrlhditsgeifiqgksitkahgKALL-E 78
Cdd:cd03250 1 ISVEDASFTWDSGeqetSFTLKDINLEVPKGELVAIVGPVGSGKSSLL--------------------------SALLgE 54
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 79 MRRNIGMIFqhfnlvkrssvlrnvLSGRVGYHP--TWKM--------VLGLFPKEDK----IKAMdALER-VNILDKynq 143
Cdd:cd03250 55 LEKLSGSVS---------------VPGSIAYVSqePWIQngtireniLFGKPFDEERyekvIKAC-ALEPdLEILPD--- 115
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 144 rSDE---------LSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDD-LRKINQELGITILI--NLHFVDLA 211
Cdd:cd03250 116 -GDLteigekginLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENcILGLLLNNKTRILVthQLQLLPHA 194
|
250
....*....|....
gi 613390585 212 keygTRIIGLRDGE 225
Cdd:cd03250 195 ----DQIVVLDNGR 204
|
|
| galliderm_ABC |
TIGR03740 |
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ... |
4-243 |
4.92e-19 |
|
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Pssm-ID: 163452 [Multi-domain] Cd Length: 223 Bit Score: 82.83 E-value: 4.92e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKahgkallEMRRNI 83
Cdd:TIGR03740 1 LETKNLSKRFGKQTA-VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTR-------KDLHKI 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNVLsgrvgYHPTwkmVLGLfpKEDKIKamDALERVNILDKYNQRSDELSGGQQQRISIARALC 163
Cdd:TIGR03740 73 GSLIESPPLYENLTARENLK-----VHTT---LLGL--PDSRID--EVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALL 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 164 QESEIILADEPVASLDPLTtkqvMDDLRKINQEL---GITILINLHFVDLAKEYGTRIIGLRDGEVVYDGP--ASEATDD 238
Cdd:TIGR03740 141 NHPKLLILDEPTNGLDPIG----IQELRELIRSFpeqGITVILSSHILSEVQQLADHIGIISEGVLGYQGKinKSENLEK 216
|
....*
gi 613390585 239 VFSKI 243
Cdd:TIGR03740 217 LFVEV 221
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
20-245 |
5.31e-19 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 83.35 E-value: 5.31e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLrsvNRLHDITS--GEIFIQGKSITKAHGKALLEMRrniGMIFQHfnlVKRSS 97
Cdd:COG4138 12 LGPISAQVNAGELIHLIGPNGAGKSTLL---ARMAGLLPgqGEILLNGRPLSDWSAAELARHR---AYLSQQ---QSPPF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 98 VLRnvlsgrvGYHptwkmVLGLF-----PKEDKIKAMDAL-ERVNILDKYNQRSDELSGGQQQRISIARALCQ------- 164
Cdd:COG4138 83 AMP-------VFQ-----YLALHqpagaSSEAVEQLLAQLaEALGLEDKLSRPLTQLSGGEWQRVRLAAVLLQvwptinp 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 165 ESEIILADEPVASLDpLTTKQVMDDLrkINQ--ELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASEA-TDDVFS 241
Cdd:COG4138 151 EGQLLLLDEPMNSLD-VAQQAALDRL--LRElcQQGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAEVmTPENLS 227
|
....
gi 613390585 242 KIYG 245
Cdd:COG4138 228 EVFG 231
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
4-226 |
7.23e-19 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 82.52 E-value: 7.23e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPN--GHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALlemRR 81
Cdd:cd03248 12 VKFQNVTFAYPTrpDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYL---HS 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 82 NIGMIFQHFNLVKRSsvLRNVLSGRVGYHPTWKMVlglfPKEDKIKAMDALERV--NILDKYNQRSDELSGGQQQRISIA 159
Cdd:cd03248 89 KVSLVGQEPVLFARS--LQDNIAYGLQSCSFECVK----EAAQKAHAHSFISELasGYDTEVGEKGSQLSGGQKQRVAIA 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 613390585 160 RALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELgiTILINLHFVDLAkEYGTRIIGLRDGEV 226
Cdd:cd03248 163 RALIRNPQVLILDEATSALDAESEQQVQQALYDWPERR--TVLVIAHRLSTV-ERADQILVLDGGRI 226
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
3-231 |
7.41e-19 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 82.07 E-value: 7.41e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 3 QIEFKNVSKVY-PNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAhgkALLEMRR 81
Cdd:cd03369 6 EIEVENLSVRYaPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTI---PLEDLRS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 82 NIGMIFQHFNLvkrssvlrnvLSGrvgyhpTWKMVLGLFPKEDKIKAMDALervnildKYNQRSDELSGGQQQRISIARA 161
Cdd:cd03369 83 SLTIIPQDPTL----------FSG------TIRSNLDPFDEYSDEEIYGAL-------RVSEGGLNLSQGQRQLLCLARA 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 613390585 162 LCQESEIILADEPVASLDPLTTKQVMDDLRKINQelGITILINLHFVDLAKEYgTRIIGLRDGEVV-YDGP 231
Cdd:cd03369 140 LLKRPRVLVLDEATASIDYATDALIQKTIREEFT--NSTILTIAHRLRTIIDY-DKILVMDAGEVKeYDHP 207
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
2-202 |
9.67e-19 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 84.86 E-value: 9.67e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 2 SQIEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIfiqgksitkahgkallEMRR 81
Cdd:COG4178 361 GALALEDLTLRTPDGRPLLEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRI----------------ARPA 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 82 NIGMIFqhfnLVKRSSV----LRNVLsgrvgyhptwkmvlgLFPK------EDKIKAmdALERVNiLDKYNQRSDE---- 147
Cdd:COG4178 425 GARVLF----LPQRPYLplgtLREAL---------------LYPAtaeafsDAELRE--ALEAVG-LGHLAERLDEeadw 482
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 613390585 148 ---LSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMddlRKINQEL-GITIL 202
Cdd:COG4178 483 dqvLSLGEQQRLAFARLLLHKPDWLFLDEATSALDEENEAALY---QLLREELpGTTVI 538
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
1-244 |
1.80e-18 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 81.48 E-value: 1.80e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSQIEFKNVSKVYPNGHVgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSIT--KAHGKAlle 78
Cdd:PRK10895 1 MATLTAKNLAKAYKGRRV-VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISllPLHARA--- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 79 mRRNIGMIFQHFNLVKRSSVLRNVLSgrvgyhpTWKMVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISI 158
Cdd:PRK10895 77 -RRGIGYLPQEASIFRRLSVYDNLMA-------VLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEI 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 159 ARALCQESEIILADEPVASLDPLTtkqvMDDLRKINQEL---GITILINLHFVDLAKEYGTRIIGLRDGEVVYDG-PASE 234
Cdd:PRK10895 149 ARALAANPKFILLDEPFAGVDPIS----VIDIKRIIEHLrdsGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGtPTEI 224
|
250
....*....|
gi 613390585 235 ATDDVFSKIY 244
Cdd:PRK10895 225 LQDEHVKRVY 234
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
20-212 |
3.39e-18 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 80.39 E-value: 3.39e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEmrrnigmifqhfnlvkrssvl 99
Cdd:COG2401 46 LRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKGTPVAGCVDVPDNQFGREASLID--------------------- 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 100 rnvlsgrvgyhptwkmvlGLFPKEDKIKAMDALERVNILDKYNQRS--DELSGGQQQRISIARALCQESEIILADEPVAS 177
Cdd:COG2401 105 ------------------AIGRKGDFKDAVELLNAVGLSDAVLWLRrfKELSTGQKFRFRLALLLAERPKLLVIDEFCSH 166
|
170 180 190
....*....|....*....|....*....|....*
gi 613390585 178 LDPLTTKQVMDDLRKINQELGITILINLHFVDLAK 212
Cdd:COG2401 167 LDRQTAKRVARNLQKLARRAGITLVVATHHYDVID 201
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
4-245 |
7.52e-18 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 81.00 E-value: 7.52e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNgHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKAllemRRNI 83
Cdd:PRK13537 8 IDFRNVEKRYGD-KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHA----RQRV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNVLS-GRVgyhptwkmvLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARAL 162
Cdd:PRK13537 83 GVVPQFDNLDPDFTVRENLLVfGRY---------FGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARAL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 163 CQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGP-----ASEATD 237
Cdd:PRK13537 154 VNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAphaliESEIGC 232
|
....*...
gi 613390585 238 DVFsKIYG 245
Cdd:PRK13537 233 DVI-EIYG 239
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
18-230 |
7.57e-18 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 79.68 E-value: 7.57e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 18 VGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKsitkAHGKALLEMRRNIGMIFQhfnlvKRSS 97
Cdd:cd03267 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGL----VPWKRRKKFLRRIGVVFG-----QKTQ 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 98 VLRNvLSGRVGYHpTWKMVLGLFPKE-----DKIKAMDALERvnILDkynQRSDELSGGQQQRISIARALCQESEIILAD 172
Cdd:cd03267 106 LWWD-LPVIDSFY-LLAAIYDLPPARfkkrlDELSELLDLEE--LLD---TPVRQLSLGQRMRAEIAAALLHEPEILFLD 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 613390585 173 EPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDG 230
Cdd:cd03267 179 EPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
1-237 |
1.30e-17 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 79.36 E-value: 1.30e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSQ-IEFKNVSKVYPNGHVG---------------------LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITS 58
Cdd:COG1134 1 MSSmIEVENVSKSYRLYHEPsrslkelllrrrrtrreefwaLKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 59 GEIFIQGKsITkahgkALLEMrrniGMIFqHFNLvkrsSVLRNV-LSGRvgyhptwkmVLGLFPKE-----DKIKAMDAL 132
Cdd:COG1134 81 GRVEVNGR-VS-----ALLEL----GAGF-HPEL----TGRENIyLNGR---------LLGLSRKEidekfDEIVEFAEL 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 133 ERVniLDK----YnqrsdelSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFV 208
Cdd:COG1134 137 GDF--IDQpvktY-------SSGMRARLAFAVATAVDPDILLVDEVLAVGDAAFQKKCLARIRELRES-GRTVIFVSHSM 206
|
250 260
....*....|....*....|....*....
gi 613390585 209 DLAKEYGTRIIGLRDGEVVYDGPASEATD 237
Cdd:COG1134 207 GAVRRLCDRAIWLEKGRLVMDGDPEEVIA 235
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
4-230 |
1.55e-17 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 78.73 E-value: 1.55e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVG---------------------LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIF 62
Cdd:cd03220 1 IELENVSKSYPTYKGGssslkklgilgrkgevgefwaLKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 63 IQGKSitkahgKALLEMrrNIGMifqHFNLvkrsSVLRNV-LSGRvgyhptwkmVLGLFPKEDKIKAMDALERVNILDKY 141
Cdd:cd03220 81 VRGRV------SSLLGL--GGGF---NPEL----TGRENIyLNGR---------LLGLSRKEIDEKIDEIIEFSELGDFI 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 142 NQRSDELSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINlHFVDLAKEYGTRIIGL 221
Cdd:cd03220 137 DLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVS-HDPSSIKRLCDRALVL 215
|
....*....
gi 613390585 222 RDGEVVYDG 230
Cdd:cd03220 216 EKGKIRFDG 224
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
4-238 |
1.88e-17 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 81.31 E-value: 1.88e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPN--GHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALlemRR 81
Cdd:TIGR00958 479 IEFQDVSFSYPNrpDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYL---HR 555
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 82 NIGMIFQHFNLVKRsSVLRNVLSGrVGYHPTWKM--VLGLFPKEDKIKAMDALERVNILDKYNQrsdeLSGGQQQRISIA 159
Cdd:TIGR00958 556 QVALVGQEPVLFSG-SVRENIAYG-LTDTPDEEImaAAKAANAHDFIMEFPNGYDTEVGEKGSQ----LSGGQKQRIAIA 629
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 613390585 160 RALCQESEIILADEPVASLDpLTTKQVMDDLRKINQELGITILINLHFVDLAKEygtrIIGLRDGEVVYDGPASEATDD 238
Cdd:TIGR00958 630 RALVRKPRVLILDEATSALD-AECEQLLQESRSRASRTVLLIAHRLSTVERADQ----ILVLKKGSVVEMGTHKQLMED 703
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
3-232 |
2.03e-17 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 81.53 E-value: 2.03e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 3 QIEFKNVSKVY-PNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAhgkALLEMRR 81
Cdd:TIGR00957 1284 RVEFRNYCLRYrEDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKI---GLHDLRF 1360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 82 NIGMIFQhfNLVKRSSVLRNVLS--GRVGYHPTWkMVLGLFPKEDKIKAMDalervnilDKYNQRSDE----LSGGQQQR 155
Cdd:TIGR00957 1361 KITIIPQ--DPVLFSGSLRMNLDpfSQYSDEEVW-WALELAHLKTFVSALP--------DKLDHECAEggenLSVGQRQL 1429
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 613390585 156 ISIARALCQESEIILADEPVASLDPLTTKQVMDDLRkiNQELGITILINLHFVDLAKEYgTRIIGLRDGEVV-YDGPA 232
Cdd:TIGR00957 1430 VCLARALLRKTKILVLDEATAAVDLETDNLIQSTIR--TQFEDCTVLTIAHRLNTIMDY-TRVIVLDKGEVAeFGAPS 1504
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
4-202 |
2.99e-17 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 76.42 E-value: 2.99e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIfiqgksitkahgkallEMRRNI 83
Cdd:cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI----------------GMPEGE 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIF--QHFNLVkrSSVLRNVLSgrvgyHPtWkmvlglfpkedkikamdalervnildkynqrSDELSGGQQQRISIARA 161
Cdd:cd03223 65 DLLFlpQRPYLP--LGTLREQLI-----YP-W-------------------------------DDVLSGGEQQRLAFARL 105
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 613390585 162 LCQESEIILADEPVASLDPLTTKQVMDDLRkinqELGITIL 202
Cdd:cd03223 106 LLHKPKFVFLDEATSALDEESEDRLYQLLK----ELGITVI 142
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
15-202 |
3.13e-17 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 77.83 E-value: 3.13e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 15 NGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKAlleMRRNIGMIFQHFNLVK 94
Cdd:PRK10247 18 GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI---YRQQVSYCAQTPTLFG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 95 rSSVLRNVLsgrvgyHPtWKmVLGLFPKEDKIkaMDALERV----NILDKynqRSDELSGGQQQRISIARALCQESEIIL 170
Cdd:PRK10247 95 -DTVYDNLI------FP-WQ-IRNQQPDPAIF--LDDLERFalpdTILTK---NIAELSGGEKQRISLIRNLQFMPKVLL 160
|
170 180 190
....*....|....*....|....*....|..
gi 613390585 171 ADEPVASLDPLTTKQVMDDLRKINQELGITIL 202
Cdd:PRK10247 161 LDEITSALDESNKHNVNEIIHRYVREQNIAVL 192
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
3-246 |
3.40e-17 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 80.56 E-value: 3.40e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 3 QIEFKNVSKVYPNGHVG-LKNINLNIEKGEFAVIVGLSGAGKSTLLRSvnrlhditsgeifIQGkSITKAHGKALLEmrr 81
Cdd:COG4618 330 RLSVENLTVVPPGSKRPiLRGVSFSLEPGEVLGVIGPSGSGKSTLARL-------------LVG-VWPPTAGSVRLD--- 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 82 niGMIFQHFNlvkrssvlRNVLSGRVGYHP--------TWKMVLGLFPKEDKIKAMDALERVN----IL---DKYNQRSD 146
Cdd:COG4618 393 --GADLSQWD--------REELGRHIGYLPqdvelfdgTIAENIARFGDADPEKVVAAAKLAGvhemILrlpDGYDTRIG 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 147 E----LSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILIN-----LHFVDlakeygtR 217
Cdd:COG4618 463 EggarLSGGQRQRIGLARALYGDPRLVVLDEPNSNLDDEGEAALAAAIRALKARGATVVVIThrpslLAAVD-------K 535
|
250 260
....*....|....*....|....*....
gi 613390585 218 IIGLRDGEVVYDGPaseaTDDVFSKIYGR 246
Cdd:COG4618 536 LLVLRDGRVQAFGP----RDEVLARLARP 560
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
5-203 |
3.45e-17 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 80.60 E-value: 3.45e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 5 EFKNVSKvYPNGHVglKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKA-------HGKALL 77
Cdd:PRK09700 267 EVRNVTS-RDRKKV--RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRspldavkKGMAYI 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 78 -EMRRNIGMiFQHFNLVKRSSVLRNVLSGRvgyhptWKMVLGLF-PKEDKIKAMDALERVNI-LDKYNQRSDELSGGQQQ 154
Cdd:PRK09700 344 tESRRDNGF-FPNFSIAQNMAISRSLKDGG------YKGAMGLFhEVDEQRTAENQRELLALkCHSVNQNITELSGGNQQ 416
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 613390585 155 RISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILI 203
Cdd:PRK09700 417 KVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD-GKVILM 464
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
12-249 |
4.31e-17 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 78.33 E-value: 4.31e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 12 VYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSV-------NRLHDIT-SGEIFIQGKSITK------AHGKALL 77
Cdd:PRK13547 9 VARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALagdltggGAPRGARvTGDVTLNGEPLAAidaprlARLRAVL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 78 EMRRNIGMIFqhfnlvkrsSVLRNVLSGRvgyHPTWKMVlGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRIS 157
Cdd:PRK13547 89 PQAAQPAFAF---------SAREIVLLGR---YPHARRA-GALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQ 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 158 IARALCQ---------ESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVY 228
Cdd:PRK13547 156 FARVLAQlwpphdaaqPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVA 235
|
250 260
....*....|....*....|..
gi 613390585 229 DG-PASEATDDVFSKIYGRTIK 249
Cdd:PRK13547 236 HGaPADVLTPAHIARCYGFAVR 257
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
2-225 |
5.34e-17 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 80.02 E-value: 5.34e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 2 SQIEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITkahGKALLEMRR 81
Cdd:PRK10522 321 QTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVT---AEQPEDYRK 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 82 NIGMIFQHFNLVKRssvlrnvLSGRVGyhptwkmvlglFPKEDKIkAMDALERVNILDKY----NQRSD-ELSGGQQQRI 156
Cdd:PRK10522 398 LFSAVFTDFHLFDQ-------LLGPEG-----------KPANPAL-VEKWLERLKMAHKLeledGRISNlKLSKGQKKRL 458
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 613390585 157 SIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILI---NLHFVDLAKeygtRIIGLRDGE 225
Cdd:PRK10522 459 ALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAishDDHYFIHAD----RLLEMRNGQ 526
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
4-238 |
5.96e-17 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 79.66 E-value: 5.96e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPnGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMrrNI 83
Cdd:PRK10762 5 LQLKGIDKAFP-GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA--GI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHFNLVKRSSVLRNVLSGRVGYHP----TWKMvlgLFPKEDKIkamdaLERVNILDKYNQRSDELSGGQQQRISIA 159
Cdd:PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRfgriDWKK---MYAEADKL-----LARLNLRFSSDKLVGELSIGEQQMVEIA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 160 RALCQESEIILADEPVASLDPLTTKQ---VMDDLRkiNQELGItILINlHFVDLAKEYGTRIIGLRDGEVVYDGPASEAT 236
Cdd:PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESlfrVIRELK--SQGRGI-VYIS-HRLKEIFEICDDVTVFRDGQFIAEREVADLT 229
|
..
gi 613390585 237 DD 238
Cdd:PRK10762 230 ED 231
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
3-230 |
6.41e-17 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 79.76 E-value: 6.41e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 3 QIEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALlemRRN 82
Cdd:PRK10790 340 RIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVL---RQG 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIfQHFNLVKRSSVLRNVLSGR-VGYHPTWkmvlglfpkedkikamDALERVNILD-----------KYNQRSDELSG 150
Cdd:PRK10790 417 VAMV-QQDPVVLADTFLANVTLGRdISEEQVW----------------QALETVQLAElarslpdglytPLGEQGNNLSV 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 151 GQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElgITILINLHFVDLAKEYGTrIIGLRDGEVVYDG 230
Cdd:PRK10790 480 GQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREH--TTLVVIAHRLSTIVEADT-ILVLHRGQAVEQG 556
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
6-174 |
1.55e-16 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 78.57 E-value: 1.55e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 6 FKNVSKVYPnGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQgKSITkahgkallemrrnIGM 85
Cdd:COG0488 1 LENLSKSFG-GRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIP-KGLR-------------IGY 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 86 IFQHFNLVKRSSVLRNVLSGrvgYHPTWKMVLGL--------FPKEDKIKAMDALERVNILDKYNQRSD----------- 146
Cdd:COG0488 66 LPQEPPLDDDLTVLDTVLDG---DAELRALEAELeeleaklaEPDEDLERLAELQEEFEALGGWEAEARaeeilsglgfp 142
|
170 180 190
....*....|....*....|....*....|....*..
gi 613390585 147 ---------ELSGGQQQRISIARALCQESEIILADEP 174
Cdd:COG0488 143 eedldrpvsELSGGWRRRVALARALLSEPDLLLLDEP 179
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
7-238 |
2.81e-16 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 75.73 E-value: 2.81e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 7 KNVSKVYPNGHvGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLE------MR 80
Cdd:PRK11701 10 RGLTKLYGPRK-GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEaerrrlLR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 81 RNIGMIFQHfnlvKRSSVLRNVLSG-RVGYHPtwkMVLGLFPKED-KIKAMDALERVNI-LDKYNQRSDELSGGQQQRIS 157
Cdd:PRK11701 89 TEWGFVHQH----PRDGLRMQVSAGgNIGERL---MAVGARHYGDiRATAGDWLERVEIdAARIDDLPTTFSGGMQQRLQ 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 158 IARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASEATD 237
Cdd:PRK11701 162 IARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLD 241
|
.
gi 613390585 238 D 238
Cdd:PRK11701 242 D 242
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
35-234 |
3.12e-16 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 76.84 E-value: 3.12e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 35 IVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEM-RRNIGMIFQHFNLVKRSSVLRNVLSGRVGYHPtw 113
Cdd:PRK11144 29 IFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPeKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMV-- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 114 kmvlGLFpkeDKIKAMDALErvNILDKYNQRsdeLSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKI 193
Cdd:PRK11144 107 ----AQF---DKIVALLGIE--PLLDRYPGS---LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERL 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 613390585 194 NQELGITILINLHFVD----LAKeygtRIIGLRDGEVVYDGPASE 234
Cdd:PRK11144 175 AREINIPILYVSHSLDeilrLAD----RVVVLEQGKVKAFGPLEE 215
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
20-179 |
5.41e-16 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 74.72 E-value: 5.41e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSV--NRLHDITSGEIFIQGKSITkahgkallEM------RRNIGMIFQH-- 89
Cdd:COG0396 16 LKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLmgHPKYEVTSGSILLDGEDIL--------ELspderaRAGIFLAFQYpv 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 90 -FNLVKRSSVLRNVLSGRVGYHPTwkmvlglfPKEDKIKAMDALERVNILDKYNQRS--DELSGGQQQRISIARALCQES 166
Cdd:COG0396 88 eIPGVSVSNFLRTALNARRGEELS--------AREFLKLLKEKMKELGLDEDFLDRYvnEGFSGGEKKRNEILQMLLLEP 159
|
170
....*....|...
gi 613390585 167 EIILADEPVASLD 179
Cdd:COG0396 160 KLAILDETDSGLD 172
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
16-203 |
6.64e-16 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 73.24 E-value: 6.64e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 16 GHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITK-------AHGKALL-EMRRNIGmif 87
Cdd:cd03215 12 VKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRrsprdaiRAGIAYVpEDRKREG--- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 88 qhfnLVKRSSVLRNvlsgrvgyhptwkMVLGLFpkedkikamdalervnildkynqrsdeLSGGQQQRISIARALCQESE 167
Cdd:cd03215 89 ----LVLDLSVAEN-------------IALSSL---------------------------LSGGNQQKVVLARWLARDPR 124
|
170 180 190
....*....|....*....|....*....|....*.
gi 613390585 168 IILADEPVASLDPLTTKQVMDDLRKINQElGITILI 203
Cdd:cd03215 125 VLILDEPTRGVDVGAKAEIYRLIRELADA-GKAVLL 159
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
4-239 |
1.79e-15 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 75.47 E-value: 1.79e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYpNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSIT-----KAHgkalle 78
Cdd:PRK15439 12 LCARSISKQY-SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCArltpaKAH------ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 79 mRRNIGMIFQHFNLVKRSSVLRNVLsgrvgyhptwkmvLGLFPKEDKIKAMDAL-ERVNILDKYNQRSDELSGGQQQRIS 157
Cdd:PRK15439 85 -QLGIYLVPQEPLLFPNLSVKENIL-------------FGLPKRQASMQKMKQLlAALGCQLDLDSSAGSLEVADRQIVE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 158 IARALCQESEIILADEPVASLDPLTTKQVMDDLRKInQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASEATD 237
Cdd:PRK15439 151 ILRGLMRDSRILILDEPTASLTPAETERLFSRIREL-LAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229
|
..
gi 613390585 238 DV 239
Cdd:PRK15439 230 DD 231
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
4-234 |
1.90e-15 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 73.67 E-value: 1.90e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKV--YPNG-----HV-GLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITkaHGKA 75
Cdd:PRK15112 5 LEVRNLSKTfrYRTGwfrrqTVeAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLH--FGDY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 76 LLEMRRnIGMIFQ----HFNLVKRSSVLRNVlsgrvgyhpTWKMVLGLFPKEDKIKAMDALERVNIL-DKYNQRSDELSG 150
Cdd:PRK15112 83 SYRSQR-IRMIFQdpstSLNPRQRISQILDF---------PLRLNTDLEPEQREKQIIETLRQVGLLpDHASYYPHMLAP 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 151 GQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDG 230
Cdd:PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232
|
....
gi 613390585 231 PASE 234
Cdd:PRK15112 233 STAD 236
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
15-202 |
2.43e-15 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 72.39 E-value: 2.43e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 15 NGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKsitkAHGKALLEMRRNIGMIfQHFNLVK 94
Cdd:TIGR01189 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGT----PLAEQRDEPHENILYL-GHLPGLK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 95 -RSSVLRNVLSgrvgYHPtwkmvlgLFPKEDKiKAMDALERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILADE 173
Cdd:TIGR01189 86 pELSALENLHF----WAA-------IHGGAQR-TIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDE 153
|
170 180
....*....|....*....|....*....
gi 613390585 174 PVASLDPLTTKQVMDDLRKINQELGITIL 202
Cdd:TIGR01189 154 PTTALDKAGVALLAGLLRAHLARGGIVLL 182
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
4-243 |
3.10e-15 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 74.69 E-value: 3.10e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNG-HVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALlemRRN 82
Cdd:TIGR01842 317 LSVENVTIVPPGGkKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETF---GKH 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIFQHFNLVKrSSVLRNVlsGRVGYHPTWKMVLglfpkeDKIKAMDALERV-NILDKYN----QRSDELSGGQQQRIS 157
Cdd:TIGR01842 394 IGYLPQDVELFP-GTVAENI--ARFGENADPEKII------EAAKLAGVHELIlRLPDGYDtvigPGGATLSGGQRQRIA 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 158 IARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILIN-----LHFVDlakeygtRIIGLRDGEVVYDGPA 232
Cdd:TIGR01842 465 LARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVIThrpslLGCVD-------KILVLQDGRIARFGER 537
|
250
....*....|.
gi 613390585 233 seatDDVFSKI 243
Cdd:TIGR01842 538 ----DEVLAKL 544
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
4-243 |
8.93e-15 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 73.62 E-value: 8.93e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVY-PNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAhgkALLEMRRN 82
Cdd:PLN03130 1238 IKFEDVVLRYrPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKF---GLMDLRKV 1314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIFQhfnlvkrSSVLrnvLSGRVGYHptwkmvLGLFPKEDKIKAMDALERVNILDKYNQRS-----------DELSGG 151
Cdd:PLN03130 1315 LGIIPQ-------APVL---FSGTVRFN------LDPFNEHNDADLWESLERAHLKDVIRRNSlgldaevseagENFSVG 1378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 152 QQQRISIARALCQESEIILADEPVASLDPLTtkqvmDDL--RKINQEL-GITILINLH----FVDLakeygTRIIGLRDG 224
Cdd:PLN03130 1379 QRQLLSLARALLRRSKILVLDEATAAVDVRT-----DALiqKTIREEFkSCTMLIIAHrlntIIDC-----DRILVLDAG 1448
|
250 260
....*....|....*....|..
gi 613390585 225 EVV-YDGPASEATDD--VFSKI 243
Cdd:PLN03130 1449 RVVeFDTPENLLSNEgsAFSKM 1470
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
14-234 |
9.12e-15 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 72.63 E-value: 9.12e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 14 PNGHV-GLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHD----ITSGEIFIQGKSITKAHGKALLE-MRRNIGMIF 87
Cdd:COG4170 16 PQGRVkAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITKdnwhVTADRFRWNGIDLLKLSPRERRKiIGREIAMIF 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 88 QHfnlvkRSSVLRNvlSGRVGYH-----PTWKmVLGLF---PKEDKIKAMDALERVNILD-KYNQRS--DELSGGQQQRI 156
Cdd:COG4170 96 QE-----PSSCLDP--SAKIGDQlieaiPSWT-FKGKWwqrFKWRKKRAIELLHRVGIKDhKDIMNSypHELTEGECQKV 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 613390585 157 SIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE 234
Cdd:COG4170 168 MIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYCGQTVESGPTEQ 245
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
27-249 |
1.02e-14 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 71.50 E-value: 1.02e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 27 IEKGEFAVIVGLSGAGKSTLLrsvNRLHDIT--SGEIFIQGKSITKAHGKALLEMRRNigmifqhfnLVKRSSVLRNVls 104
Cdd:PRK03695 19 VRAGEILHLVGPNGAGKSTLL---ARMAGLLpgSGSIQFAGQPLEAWSAAELARHRAY---------LSQQQTPPFAM-- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 105 grvgyhPTWKMvLGLF-----PKEDKIKAMDAL-ERVNILDKYNQRSDELSGGQQQRISIARALCQ-------ESEIILA 171
Cdd:PRK03695 85 ------PVFQY-LTLHqpdktRTEAVASALNEVaEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQvwpdinpAGQLLLL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 172 DEPVASLDpLTTKQVMDDLRKINQELGITILINLHfvDLAKEY--GTRIIGLRDGEVVYDGPASEA-TDDVFSKIYGRTI 248
Cdd:PRK03695 158 DEPMNSLD-VAQQAALDRLLSELCQQGIAVVMSSH--DLNHTLrhADRVWLLKQGKLLASGRRDEVlTPENLAQVFGVNF 234
|
.
gi 613390585 249 K 249
Cdd:PRK03695 235 R 235
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
5-236 |
1.16e-14 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 73.14 E-value: 1.16e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 5 EFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKAllemRRNIG 84
Cdd:COG3845 259 EVENLSVRDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRE----RRRLG 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 85 MIF-----QHFNLVKRSSVLRNVLSGRVGYHPTWKmvlGLFPKEDKIKAMdALERVnilDKY-------NQRSDELSGGQ 152
Cdd:COG3845 335 VAYipedrLGRGLVPDMSVAENLILGRYRRPPFSR---GGFLDRKAIRAF-AEELI---EEFdvrtpgpDTPARSLSGGN 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 153 QQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILinlhFV--DL--AKEYGTRIIGLRDGEVVY 228
Cdd:COG3845 408 QQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRDA-GAAVL----LIseDLdeILALSDRIAVMYEGRIVG 482
|
....*...
gi 613390585 229 DGPASEAT 236
Cdd:COG3845 483 EVPAAEAT 490
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
4-231 |
1.66e-14 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 71.66 E-value: 1.66e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYP-----NGHVG---------------LKNINLNIEKGEFAVIVGLSGAGKSTLLRSvnrLHDI---TSGE 60
Cdd:COG4586 2 IEVENLSKTYRvyekePGLKGalkglfrreyreveaVDDISFTIEPGEIVGFIGPNGAGKSTTIKM---LTGIlvpTSGE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 61 IFIQGKSITKaHGKALLemrRNIGMIFQH-------------FNLVKRssvlrnvlsgrvgyhptwkmVLGLfPKEDKIK 127
Cdd:COG4586 79 VRVLGYVPFK-RRKEFA---RRIGVVFGQrsqlwwdlpaidsFRLLKA--------------------IYRI-PDAEYKK 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 128 AMDAL-ERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLH 206
Cdd:COG4586 134 RLDELvELLDLGELLDTPVRQLSLGQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYNRERGTTILLTSH 213
|
250 260
....*....|....*....|....*....
gi 613390585 207 FVD----LAKeygtRIIGLRDGEVVYDGP 231
Cdd:COG4586 214 DMDdieaLCD----RVIVIDHGRIIYDGS 238
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
20-257 |
2.53e-14 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 72.32 E-value: 2.53e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRS-VNRLHDITSGEIFIQGksiTKAHGKallemrrNIGMIFQhfnlvkrSSV 98
Cdd:PLN03232 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAmLGELSHAETSSVVIRG---SVAYVP-------QVSWIFN-------ATV 695
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 99 LRNVLSGRvGYHPT--WKMV--------LGLFPKEDkikamdalervniLDKYNQRSDELSGGQQQRISIARALCQESEI 168
Cdd:PLN03232 696 RENILFGS-DFESEryWRAIdvtalqhdLDLLPGRD-------------LTEIGERGVNISGGQKQRVSMARAVYSNSDI 761
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 169 ILADEPVASLDPLTTKQVMDDLRKINQELGITILI--NLHFVDLAKeygtRIIGLRDGEVVYDGPASE--ATDDVFSKIY 244
Cdd:PLN03232 762 YIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVtnQLHFLPLMD----RIILVSEGMIKEEGTFAElsKSGSLFKKLM 837
|
250
....*....|...
gi 613390585 245 GRTIKEDEKLGVN 257
Cdd:PLN03232 838 ENAGKMDATQEVN 850
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
4-247 |
3.02e-14 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 72.32 E-value: 3.02e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVY-PNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAhgkALLEMRRN 82
Cdd:PLN03232 1235 IKFEDVHLRYrPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKF---GLTDLRRV 1311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIFQhfnlvkrSSVLrnvLSGRVGYHptwkmvLGLFPKEDKIKAMDALERVNILDKYNQRS-----------DELSGG 151
Cdd:PLN03232 1312 LSIIPQ-------SPVL---FSGTVRFN------IDPFSEHNDADLWEALERAHIKDVIDRNPfgldaevseggENFSVG 1375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 152 QQQRISIARALCQESEIILADEPVASLDPLTTKQVMddlRKINQEL-GITILINLHFVDLAKEYgTRIIGLRDGEVV-YD 229
Cdd:PLN03232 1376 QRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQ---RTIREEFkSCTMLVIAHRLNTIIDC-DKILVLSSGQVLeYD 1451
|
250 260
....*....|....*....|
gi 613390585 230 GPASEATDD--VFSKIYGRT 247
Cdd:PLN03232 1452 SPQELLSRDtsAFFRMVHST 1471
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
19-174 |
3.15e-14 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 71.59 E-value: 3.15e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 19 GLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSIT-------KAHGKALL-EMRRNIGmifqhf 90
Cdd:COG1129 267 VVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVRirsprdaIRAGIAYVpEDRKGEG------ 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 91 nLVKRSSVLRNVLSGRVGYHpTWKMVLGlFPKEDKIkAMDALERVNIldKY---NQRSDELSGGQQQRISIARALCQESE 167
Cdd:COG1129 341 -LVLDLSIRENITLASLDRL-SRGGLLD-RRRERAL-AEEYIKRLRI--KTpspEQPVGNLSGGNQQKVVLAKWLATDPK 414
|
....*..
gi 613390585 168 IILADEP 174
Cdd:COG1129 415 VLILDEP 421
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
20-235 |
4.69e-14 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 68.71 E-value: 4.69e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHD--ITSGEIFIQGKSITKahgkalLEM----RRNIGMIFQH---F 90
Cdd:cd03217 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKyeVTEGEILFKGEDITD------LPPeeraRLGIFLAFQYppeI 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 91 NLVKRSSVLRNVLSGrvgyhptwkmvlglfpkedkikamdalervnildkynqrsdeLSGGQQQRISIARALCQESEIIL 170
Cdd:cd03217 90 PGVKNADFLRYVNEG------------------------------------------FSGGEKKRNEILQLLLLEPDLAI 127
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 613390585 171 ADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEY-GTRIIGLRDGEVVYDGPASEA 235
Cdd:cd03217 128 LDEPDSGLDIDALRLVAEVINKLREE-GKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSGDKELA 192
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
20-224 |
6.70e-14 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 68.90 E-value: 6.70e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMRRNIGMIFQHFNLVKRSSVL 99
Cdd:cd03290 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 100 RNVLSGRVGYHPTWKMVL---GLFPKEDKIKAMDALErvnildkYNQRSDELSGGQQQRISIARALCQESEIILADEPVA 176
Cdd:cd03290 97 ENITFGSPFNKQRYKAVTdacSLQPDIDLLPFGDQTE-------IGERGINLSGGQRQRICVARALYQNTNIVFLDDPFS 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 613390585 177 SLDPLTTKQVMDD-LRKINQELGITILINLHFVDLAKeYGTRIIGLRDG 224
Cdd:cd03290 170 ALDIHLSDHLMQEgILKFLQDDKRTLVLVTHKLQYLP-HADWIIAMKDG 217
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
15-179 |
8.23e-14 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 67.98 E-value: 8.23e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 15 NGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHgkaLLEMRRNIGmifqHFNLVK 94
Cdd:PRK13539 13 GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPD---VAEACHYLG----HRNAMK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 95 RS-SVLRNVLsgrvgyhpTWKMVLGlfpkEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILADE 173
Cdd:PRK13539 86 PAlTVAENLE--------FWAAFLG----GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDE 153
|
....*.
gi 613390585 174 PVASLD 179
Cdd:PRK13539 154 PTAALD 159
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
14-210 |
1.45e-13 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 68.98 E-value: 1.45e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 14 PNGHVGLKN-INLNIEKGEFAVIVGLSGAGKST-------LLRSvnrlHDITSGEIFIQGKSITKAHGKALLEMR-RNIG 84
Cdd:PRK09473 25 PDGDVTAVNdLNFSLRAGETLGIVGESGSGKSQtafalmgLLAA----NGRIGGSATFNGREILNLPEKELNKLRaEQIS 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 85 MIFQ----HFN-LVKRSSVLRNVL------SGRVGYHPTWKMVlglfpkeDKIKAMDALERVNILdkynqrSDELSGGQQ 153
Cdd:PRK09473 101 MIFQdpmtSLNpYMRVGEQLMEVLmlhkgmSKAEAFEESVRML-------DAVKMPEARKRMKMY------PHEFSGGMR 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 613390585 154 QRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHfvDL 210
Cdd:PRK09473 168 QRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITH--DL 222
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
20-243 |
1.95e-13 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 69.31 E-value: 1.95e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLL-----RSVNRLhdITSGEIFIQGKSITKAhgkallEMRRNIGMIFQHFNLVK 94
Cdd:TIGR00955 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMnalafRSPKGV--KGSGSVLLNGMPIDAK------EMRAISAYVQQDDLFIP 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 95 RSSVLRNVLsgrvgYHPTWKMVLGLFPKEDKIKAMDALERVNILDKYN------QRSDELSGGQQQRISIARALCQESEI 168
Cdd:TIGR00955 113 TLTVREHLM-----FQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANtrigvpGRVKGLSGGERKRLAFASELLTDPPL 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 169 ILADEPVASLDPLTTKQVMDDLRKINQElGITILINLH------FvdlakEYGTRIIGLRDGEVVYDGPASEATdDVFSK 242
Cdd:TIGR00955 188 LFCDEPTSGLDSFMAYSVVQVLKGLAQK-GKTIICTIHqpsselF-----ELFDKIILMAEGRVAYLGSPDQAV-PFFSD 260
|
.
gi 613390585 243 I 243
Cdd:TIGR00955 261 L 261
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
22-234 |
2.05e-13 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 68.61 E-value: 2.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 22 NINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHD----ITSGEIFIQGKSITKAHGKallEMRRNIG----MIFQhfnlv 93
Cdd:PRK11022 25 RISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDypgrVMAEKLEFNGQDLQRISEK---ERRNLVGaevaMIFQ----- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 94 KRSSVLRNVLSgrVGYH--PTWKMVLGLFPKEDKIKAMDALERVNI------LDKYNQrsdELSGGQQQRISIARALCQE 165
Cdd:PRK11022 97 DPMTSLNPCYT--VGFQimEAIKVHQGGNKKTRRQRAIDLLNQVGIpdpasrLDVYPH---QLSGGMSQRVMIAMAIACR 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 613390585 166 SEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE 234
Cdd:PRK11022 172 PKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHD 240
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
20-234 |
3.00e-13 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 69.11 E-value: 3.00e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKAL-------LEMRR----NIGMIFQ 88
Cdd:PRK10261 32 VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIelseqsaAQMRHvrgaDMAMIFQ 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 89 hfnlvKRSSVLRNVLSgrVGYHPTWKMVL--GLFPKEDKIKAMDALERVNI------LDKYNQrsdELSGGQQQRISIAR 160
Cdd:PRK10261 112 -----EPMTSLNPVFT--VGEQIAESIRLhqGASREEAMVEAKRMLDQVRIpeaqtiLSRYPH---QLSGGMRQRVMIAM 181
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 613390585 161 ALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE 234
Cdd:PRK10261 182 ALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQ 255
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
20-230 |
7.90e-13 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 67.84 E-value: 7.90e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSV-NRLHDITSGEIFIQGksiTKAHGKallemrrNIGMIFQhfnlvkrSSV 98
Cdd:PLN03130 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMlGELPPRSDASVVIRG---TVAYVP-------QVSWIFN-------ATV 695
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 99 LRNVLSGrVGYHPT--WKMV--------LGLFPKEDkikamdalervniLDKYNQRSDELSGGQQQRISIARALCQESEI 168
Cdd:PLN03130 696 RDNILFG-SPFDPEryERAIdvtalqhdLDLLPGGD-------------LTEIGERGVNISGGQKQRVSMARAVYSNSDV 761
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 613390585 169 ILADEPVASLDPLTTKQVMDdlRKINQELG----ITILINLHF---VDlakeygtRIIGLRDGEVVYDG 230
Cdd:PLN03130 762 YIFDDPLSALDAHVGRQVFD--KCIKDELRgktrVLVTNQLHFlsqVD-------RIILVHEGMIKEEG 821
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
2-236 |
1.18e-12 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 65.88 E-value: 1.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 2 SQIEFKNVSkVYPNGhVGLKNINLNIEKGEFAVIVGLSGAGKS--------TLLRSVNRlhdiTSGEIFIQGKSITKAhg 73
Cdd:PRK10418 3 QQIELRNIA-LQAAQ-PLVHGVSLTLQRGRVLALVGGSGSGKSltcaaalgILPAGVRQ----TAGRVLLDGKPVAPC-- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 74 kallEMR-RNIGMIFQH----FNLVK--RSSVLRNVLsgrvgyhptwkmVLGLFPKEDKIkaMDALERVN------ILDK 140
Cdd:PRK10418 75 ----ALRgRKIATIMQNprsaFNPLHtmHTHARETCL------------ALGKPADDATL--TAALEAVGlenaarVLKL 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 141 YnqrSDELSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFV--------DLAK 212
Cdd:PRK10418 137 Y---PFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMgvvarladDVAV 213
|
250 260
....*....|....*....|....
gi 613390585 213 EYGTRIIGLRDGEVVYDGPASEAT 236
Cdd:PRK10418 214 MSHGRIVEQGDVETLFNAPKHAVT 237
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
3-192 |
1.82e-12 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 65.65 E-value: 1.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 3 QIEFKNVSKVYPN-GHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDiTSGEIFIQGKSITKAhgkALLEMRR 81
Cdd:cd03289 2 QMTVKDLTAKYTEgGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSV---PLQKWRK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 82 NIGMIFQHFnlvkrssvlrNVLSGrvgyhpTWKMVL---GLFPKEDKIKAMDALERVNILDKYNQRSD--------ELSG 150
Cdd:cd03289 78 AFGVIPQKV----------FIFSG------TFRKNLdpyGKWSDEEIWKVAEEVGLKSVIEQFPGQLDfvlvdggcVLSH 141
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 613390585 151 GQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRK 192
Cdd:cd03289 142 GHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQ 183
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
4-212 |
1.95e-12 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 65.14 E-value: 1.95e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIfiqgksitkahgkallemrrni 83
Cdd:PRK09544 5 VSLENVSVSFGQRRV-LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI---------------------- 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 gmifqhfnlvKRSSVLRnvlsgrVGYHP-----------TWKMVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQ 152
Cdd:PRK09544 62 ----------KRNGKLR------IGYVPqklyldttlplTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGE 125
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 613390585 153 QQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILI---NLHFVdLAK 212
Cdd:PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMvshDLHLV-MAK 187
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
100-249 |
2.16e-12 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 65.91 E-value: 2.16e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 100 RNVLSGRVGYHPTWKMvLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILADEPVASLD 179
Cdd:NF000106 98 RESFSGRENLYMIGR*-LDLSRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLD 176
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 180 PLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGpaseATDDVFSKIYGRTIK 249
Cdd:NF000106 177 PRTRNEVWDEVRSMVRD-GATVLLTTQYMEEAEQLAHELTVIDRGRVIADG----KVDELKTKVGGRTLQ 241
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
4-225 |
3.28e-12 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 62.47 E-value: 3.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIfiqgksitkahgkallemrrni 83
Cdd:cd03221 1 IELENLSKTYGGKLL-LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV---------------------- 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 gmifqhfnlvKRSSVLrnvlsgRVGYhptwkmvlglfpkedkikamdalervnildkYNQrsdeLSGGQQQRISIARALC 163
Cdd:cd03221 58 ----------TWGSTV------KIGY-------------------------------FEQ----LSGGEKMRLALAKLLL 86
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 613390585 164 QESEIILADEPVASLDPLTTKQVMDDLRKINQelgiTILINLHFVDLAKEYGTRIIGLRDGE 225
Cdd:cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEYPG----TVILVSHDRYFLDQVATKIIELEDGK 144
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
1-225 |
1.01e-11 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 64.67 E-value: 1.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSQIEFKNVSKVYPN-GHVGL-KNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKahGKALLE 78
Cdd:PTZ00265 380 IKKIQFKNVRFHYDTrKDVEIyKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLK--DINLKW 457
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 79 MRRNIGMIFQHfNLVKRSSVLRNV------------------------LSGRVGYHPTWKMVLGLFpkEDKIKAMDALER 134
Cdd:PTZ00265 458 WRSKIGVVSQD-PLLFSNSIKNNIkyslyslkdlealsnyynedgndsQENKNKRNSCRAKCAGDL--NDMSNTTDSNEL 534
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 135 VNILDKYNQRSD--------------------------------ELSGGQQQRISIARALCQESEIILADEPVASLDPLT 182
Cdd:PTZ00265 535 IEMRKNYQTIKDsevvdvskkvlihdfvsalpdkyetlvgsnasKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKS 614
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 613390585 183 TKQVMDDLRKIN-QELGITILI----------NLHFVDLAKEYGTRIIGLRDGE 225
Cdd:PTZ00265 615 EYLVQKTINNLKgNENRITIIIahrlstiryaNTIFVLSNRERGSTVDVDIIGE 668
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
20-188 |
1.38e-11 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 64.16 E-value: 1.38e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALL--EMRRNI--GMIFQHFnlvKR 95
Cdd:TIGR01271 442 LKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMpgTIKDNIifGLSYDEY---RY 518
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 96 SSVLRNVlsgrvgyhpTWKMVLGLFPKEDKIKAMDAlervnildkynqrSDELSGGQQQRISIARALCQESEIILADEPV 175
Cdd:TIGR01271 519 TSVIKAC---------QLEEDIALFPEKDKTVLGEG-------------GITLSGGQRARISLARAVYKDADLYLLDSPF 576
|
170
....*....|...
gi 613390585 176 ASLDPLTTKQVMD 188
Cdd:TIGR01271 577 THLDVVTEKEIFE 589
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
4-234 |
2.08e-11 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 62.90 E-value: 2.08e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNvskvyPNGHV-GLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVN--------------RLHDITSGEIFIQGKSI 68
Cdd:PRK15093 11 IEFKT-----SDGWVkAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICgvtkdnwrvtadrmRFDDIDLLRLSPRERRK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 69 TKAHgkallemrrNIGMIFQHFN--LVKRSSVLRNVLSGRVG--YHPTWKMVLGLfpkeDKIKAMDALERVNILDKYNQR 144
Cdd:PRK15093 86 LVGH---------NVSMIFQEPQscLDPSERVGRQLMQNIPGwtYKGRWWQRFGW----RKRRAIELLHRVGIKDHKDAM 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 145 SD---ELSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGL 221
Cdd:PRK15093 153 RSfpyELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVL 232
|
250
....*....|...
gi 613390585 222 RDGEVVYDGPASE 234
Cdd:PRK15093 233 YCGQTVETAPSKE 245
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
4-230 |
2.49e-11 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 63.16 E-value: 2.49e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPnGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIfIQGKSItkahgkallemrrNI 83
Cdd:COG0488 316 LELEGLSKSYG-DKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTV-KLGETV-------------KI 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 GMIFQHF-NLVKRSSVLRNVLSGRvgyhptwkmvlglfPKEDKIKAMDALERvnIL---DKYNQRSDELSGGQQQRISIA 159
Cdd:COG0488 381 GYFDQHQeELDPDKTVLDELRDGA--------------PGGTEQEVRGYLGR--FLfsgDDAFKPVGVLSGGEKARLALA 444
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 613390585 160 RALCQESEIILADEPVASLDpLTTKQVMDDLrkinqeL----GITILI--NLHFVD-LAkeygTRIIGLRDGEVV-YDG 230
Cdd:COG0488 445 KLLLSPPNVLLLDEPTNHLD-IETLEALEEA------LddfpGTVLLVshDRYFLDrVA----TRILEFEDGGVReYPG 512
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
4-186 |
6.66e-11 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 61.95 E-value: 6.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYpNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLH------DITsgeIFiqGKSitKAHGKALL 77
Cdd:PRK10938 261 IVLNNGVVSY-NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHpqgysnDLT---LF--GRR--RGSGETIW 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 78 EMRRNIGMIFQHFNLVKR-SSVLRNV-LSGrvgYHPTwkmvLGLF---PKEDKIKAMDALERVNILDKY-NQRSDELSGG 151
Cdd:PRK10938 333 DIKKHIGYVSSSLHLDYRvSTSVRNViLSG---FFDS----IGIYqavSDRQQKLAQQWLDILGIDKRTaDAPFHSLSWG 405
|
170 180 190
....*....|....*....|....*....|....*
gi 613390585 152 QQQRISIARALCQESEIILADEPVASLDPLTTKQV 186
Cdd:PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLV 440
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
23-180 |
7.40e-11 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 60.25 E-value: 7.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 23 INLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAhgkallEMRRNIGMIFQHFNLVKRSSVLRNV 102
Cdd:PRK13543 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG------DRSRFMAYLGHLPGLKADLSTLENL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 103 --LSGRVGYHPtwkmvlglfpkedKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILADEPVASLDP 180
Cdd:PRK13543 104 hfLCGLHGRRA-------------KQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDL 170
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
4-208 |
1.16e-10 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 61.33 E-value: 1.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNG-HVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITkAHGkaLLEMRRN 82
Cdd:PTZ00243 1309 LVFEGVQMRYREGlPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIG-AYG--LRELRRQ 1385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIFQHFNLVKrSSVLRNVlsgrvgyHPtwkmvlglFPKEDKIKAMDALERVNILDKYNQRSDEL-----------SGG 151
Cdd:PTZ00243 1386 FSMIPQDPVLFD-GTVRQNV-------DP--------FLEASSAEVWAALELVGLRERVASESEGIdsrvleggsnySVG 1449
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 613390585 152 QQQRISIARALCQE-SEIILADEPVASLDPLTTKQVMDDLRK-INQELGITILINLHFV 208
Cdd:PTZ00243 1450 QRQLMCMARALLKKgSGFILMDEATANIDPALDRQIQATVMSaFSAYTVITIAHRLHTV 1508
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
16-202 |
1.16e-10 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 59.43 E-value: 1.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 16 GHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGkallEMRRNIGMIfQHFNLVK- 94
Cdd:cd03231 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRD----SIARGLLYL-GHAPGIKt 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 95 RSSVLRNVlsgrvgyhpTWkmvlgLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILADEP 174
Cdd:cd03231 87 TLSVLENL---------RF-----WHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEP 152
|
170 180
....*....|....*....|....*...
gi 613390585 175 VASLDPLTTKQVMDDLRKINQELGITIL 202
Cdd:cd03231 153 TTALDKAGVARFAEAMAGHCARGGMVVL 180
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
20-190 |
1.28e-10 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 61.33 E-value: 1.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQgksitkahgkallemrRNIGMIFQH---FNLVKRS 96
Cdd:PTZ00243 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE----------------RSIAYVPQQawiMNATVRG 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 97 SVLrnvlsgrvgyhptwkmvlgLFPKEDKIKAMDALeRVNILD------------KYNQRSDELSGGQQQRISIARALCQ 164
Cdd:PTZ00243 740 NIL-------------------FFDEEDAARLADAV-RVSQLEadlaqlgggletEIGEKGVNLSGGQKARVSLARAVYA 799
|
170 180
....*....|....*....|....*.
gi 613390585 165 ESEIILADEPVASLDPLTTKQVMDDL 190
Cdd:PTZ00243 800 NRDVYLLDDPLSALDAHVGERVVEEC 825
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
4-182 |
1.36e-10 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 61.46 E-value: 1.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPN----------------GHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDiTSGEIFIQGKS 67
Cdd:TIGR01271 1203 IENPHAQKCWPSggqmdvqgltakyteaGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVS 1281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 68 ITKAhgkALLEMRRNIGMIFQHFnlvkrssvlrNVLSGrvgyhpTWKMVLGLFPKEDKIKAMDALERVNILDKYNQRSDE 147
Cdd:TIGR01271 1282 WNSV---TLQTWRKAFGVIPQKV----------FIFSG------TFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDK 1342
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 613390585 148 -----------LSGGQQQRISIARALCQESEIILADEPVASLDPLT 182
Cdd:TIGR01271 1343 ldfvlvdggyvLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVT 1388
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
22-179 |
2.17e-10 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 58.66 E-value: 2.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 22 NINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGkallEMRRN---IGmifqHFNLVKRS-S 97
Cdd:PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRD----EYHQDllyLG----HQPGIKTElT 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 98 VLRNVlsgrvgyhpTWKMVLGLFPKEDKIkaMDALERVNILDkynqRSD----ELSGGQQQRISIAR-ALCQESEIILaD 172
Cdd:PRK13538 91 ALENL---------RFYQRLHGPGDDEAL--WEALAQVGLAG----FEDvpvrQLSAGQQRRVALARlWLTRAPLWIL-D 154
|
....*..
gi 613390585 173 EPVASLD 179
Cdd:PRK13538 155 EPFTAID 161
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
20-190 |
2.21e-10 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 60.73 E-value: 2.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGkSITKAHGKALlemrrnigmifqhfnlVKRSSVL 99
Cdd:TIGR00957 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-SVAYVPQQAW----------------IQNDSLR 716
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 100 RNVLSGRVGYHPTWKMVL---GLFPKEDKIKAMDALErvnildkYNQRSDELSGGQQQRISIARALCQESEIILADEPVA 176
Cdd:TIGR00957 717 ENILFGKALNEKYYQQVLeacALLPDLEILPSGDRTE-------IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 789
|
170
....*....|....
gi 613390585 177 SLDPLTTKQVMDDL 190
Cdd:TIGR00957 790 AVDAHVGKHIFEHV 803
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
20-188 |
3.94e-10 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 58.71 E-value: 3.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLrsvnrlhditsgeIFIQGksitkahgkallEMRRNIGMIfQHfnlvkrssvl 99
Cdd:cd03291 53 LKNINLKIEKGEMLAITGSTGSGKTSLL-------------MLILG------------ELEPSEGKI-KH---------- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 100 rnvlSGRVGYHP--TWKM--------VLGLFPKEDK----IKAMDALERVNIL-DKYNQRSDE----LSGGQQQRISIAR 160
Cdd:cd03291 97 ----SGRISFSSqfSWIMpgtikeniIFGVSYDEYRyksvVKACQLEEDITKFpEKDNTVLGEggitLSGGQRARISLAR 172
|
170 180
....*....|....*....|....*...
gi 613390585 161 ALCQESEIILADEPVASLDPLTTKQVMD 188
Cdd:cd03291 173 AVYKDADLYLLDSPFGYLDVFTEKEIFE 200
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
20-237 |
5.15e-10 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 58.11 E-value: 5.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSV--NRLHDITSGEIFIQGKSITKAHGkallEMRRNIGmIFQHFNL----- 92
Cdd:CHL00131 23 LKGLNLSINKGEIHAIMGPNGSGKSTLSKVIagHPAYKILEGDILFKGESILDLEP----EERAHLG-IFLAFQYpieip 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 93 -VKRSSVLRNVLSGRVGYhptwkmvLGLfPKEDKIK----AMDALERVNILDKYNQR--SDELSGGQQQRISIARALCQE 165
Cdd:CHL00131 98 gVSNADFLRLAYNSKRKF-------QGL-PELDPLEfleiINEKLKLVGMDPSFLSRnvNEGFSGGEKKRNEILQMALLD 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 613390585 166 SEIILADEPVASLDPLTTKQVMDDLRKI-NQELGItILINlHFVDLAkEYgtrIIG-----LRDGEVVYDGPASEATD 237
Cdd:CHL00131 170 SELAILDETDSGLDIDALKIIAEGINKLmTSENSI-ILIT-HYQRLL-DY---IKPdyvhvMQNGKIIKTGDAELAKE 241
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
22-207 |
5.58e-10 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 59.37 E-value: 5.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 22 NINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITkAHGkalLEMRRNIGMIFQHFNLVKRSSVLRN 101
Cdd:NF033858 284 HVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVD-AGD---IATRRRVGYMSQAFSLYGELTVRQN 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 102 -VLSGRvgyhptwkmvlgLF--PKED---KIKAMdaLERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILADEPV 175
Cdd:NF033858 360 lELHAR------------LFhlPAAEiaaRVAEM--LERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPT 425
|
170 180 190
....*....|....*....|....*....|..
gi 613390585 176 ASLDPLTTKQVMDDLRKINQELGITILINLHF 207
Cdd:NF033858 426 SGVDPVARDMFWRLLIELSREDGVTIFISTHF 457
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
5-238 |
6.50e-10 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 58.65 E-value: 6.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 5 EFKNVSKVYPnGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITS--GEIFIQG-----KSI--TKAHGka 75
Cdd:NF040905 3 EMRGITKTFP-GVKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGVYPHGSyeGEILFDGevcrfKDIrdSEALG-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 76 llemrrnIGMIFQHFNLVKRSSVLRNVL-------SGRVGYHPTWKmvlglfpkedkiKAMDALERVNILDKYNQRSDEL 148
Cdd:NF040905 80 -------IVIIHQELALIPYLSIAENIFlgnerakRGVIDWNETNR------------RARELLAKVGLDESPDTLVTDI 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 149 SGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElGIT-ILINlHFVDLAKEYGTRIIGLRDGEVV 227
Cdd:NF040905 141 GVGKQQLVEIAKALSKDVKLLILDEPTAALNEEDSAALLDLLLELKAQ-GITsIIIS-HKLNEIRRVADSITVLRDGRTI 218
|
250
....*....|...
gi 613390585 228 --YDGPASEATDD 238
Cdd:NF040905 219 etLDCRADEVTED 231
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
2-179 |
8.01e-10 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 58.79 E-value: 8.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 2 SQIEF--KNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRsvnrlhdITSGeifiqgksITKAH-GKALLE 78
Cdd:TIGR03719 1 AQYIYtmNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLR-------IMAG--------VDKDFnGEARPQ 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 79 MRRNIGMIFQHFNLVKRSSVLRNVLSGrVGY----------------HPTWKMVlGLFPK----EDKIK----------- 127
Cdd:TIGR03719 66 PGIKVGYLPQEPQLDPTKTVRENVEEG-VAEikdaldrfneisakyaEPDADFD-KLAAEqaelQEIIDaadawdldsql 143
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 613390585 128 --AMDALErvniLDKYNQRSDELSGGQQQRISIARALCQESEIILADEPVASLD 179
Cdd:TIGR03719 144 eiAMDALR----CPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLD 193
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
3-231 |
1.50e-09 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 58.12 E-value: 1.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 3 QIEFKNVSKVY---PNGHVgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEM 79
Cdd:PTZ00265 1165 KIEIMDVNFRYisrPNVPI-YKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQ 1243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 80 ---RRNIGMI-FQHFNLVKRSSV---------------------------LRNVLSgRVGYHPtwkMVLGL-------FP 121
Cdd:PTZ00265 1244 gdeEQNVGMKnVNEFSLTKEGGSgedstvfknsgkilldgvdicdynlkdLRNLFS-IVSQEP---MLFNMsiyenikFG 1319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 122 KED----------KIKAMDALERvNILDKYNQR----SDELSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVM 187
Cdd:PTZ00265 1320 KEDatredvkracKFAAIDEFIE-SLPNKYDTNvgpyGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIE 1398
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 613390585 188 DDLRKINQELGITILINLHfvdlakeygtRIIGLR--DGEVVYDGP 231
Cdd:PTZ00265 1399 KTIVDIKDKADKTIITIAH----------RIASIKrsDKIVVFNNP 1434
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
13-179 |
5.97e-09 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 55.11 E-value: 5.97e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 13 YPNGHVGLKNINLNIEKGEFA-----VIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSItkAHGKALLEmrrnigmif 87
Cdd:cd03237 3 YPTMKKTLGEFTLEVEGGSISeseviGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV--SYKPQYIK--------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 88 qhfnlVKRSSVLRNVLSG---RVGYHPTWKMVLglfpkedkikaMDALERVNILDkynQRSDELSGGQQQRISIARALCQ 164
Cdd:cd03237 72 -----ADYEGTVRDLLSSitkDFYTHPYFKTEI-----------AKPLQIEQILD---REVPELSGGELQRVAIAACLSK 132
|
170
....*....|....*
gi 613390585 165 ESEIILADEPVASLD 179
Cdd:cd03237 133 DADIYLLDEPSAYLD 147
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
20-179 |
4.55e-08 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 53.42 E-value: 4.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITkahgkALLEMR--RNI-GMIFQHF--NLVK 94
Cdd:PRK11147 19 LDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIV-----ARLQQDppRNVeGTVYDFVaeGIEE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 95 RSSVLRN--VLSGRVGYHPTWKMV------------LGLFPKEDKIKamDALERVNiLDKYNQRSdELSGGQQQRISIAR 160
Cdd:PRK11147 94 QAEYLKRyhDISHLVETDPSEKNLnelaklqeqldhHNLWQLENRIN--EVLAQLG-LDPDAALS-SLSGGWLRKAALGR 169
|
170
....*....|....*....
gi 613390585 161 ALCQESEIILADEPVASLD 179
Cdd:PRK11147 170 ALVSNPDVLLLDEPTNHLD 188
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
20-230 |
4.67e-08 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 51.88 E-value: 4.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDIT---SGEIFIQGKSITKAHGKAllemRRNIGMIFQHFNLVKRS 96
Cdd:cd03233 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNvsvEGDIHYNGIPYKEFAEKY----PGEIIYVSEEDVHFPTL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 97 SVLRnvlsgrvgyhpTWKMVLGLfpkedkikamdalervnildKYNQRSDELSGGQQQRISIARALCQESEIILADEPVA 176
Cdd:cd03233 99 TVRE-----------TLDFALRC--------------------KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTR 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 613390585 177 SLDPLTTKQVMDDLRKINQELGITILINL--------HFVDlakeygtRIIGLRDGEVVYDG 230
Cdd:cd03233 148 GLDSSTALEILKCIRTMADVLKTTTFVSLyqasdeiyDLFD-------KVLVLYEGRQIYYG 202
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
20-202 |
5.78e-08 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 51.49 E-value: 5.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITK---AHGKALLEMRRNIGMifqHFNLVKRS 96
Cdd:PRK13540 17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKdlcTYQKQLCFVGHRSGI---NPYLTLRE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 97 SVLRNV--LSGRVGyhptwkmvlglfpkedkikaMDALERVNILDKY-NQRSDELSGGQQQRISIARALCQESEIILADE 173
Cdd:PRK13540 94 NCLYDIhfSPGAVG--------------------ITELCRLFSLEHLiDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDE 153
|
170 180
....*....|....*....|....*....
gi 613390585 174 PVASLDPLTTKQVMDDLRKINQELGITIL 202
Cdd:PRK13540 154 PLVALDELSLLTIITKIQEHRAKGGAVLL 182
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
4-218 |
6.40e-08 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 53.09 E-value: 6.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYP-NGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKahgkallemrrN 82
Cdd:TIGR01257 1938 LRLNELTKVYSgTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-----------N 2006
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 83 IGMIFQHFNLVKRSSVLRNVLSGRVGYHpTWKMVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARAL 162
Cdd:TIGR01257 2007 ISDVHQNMGYCPQFDAIDDLLTGREHLY-LYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIAL 2085
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 613390585 163 CQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILINLHFVDLAKEYGTRI 218
Cdd:TIGR01257 2086 IGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRL 2140
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
2-229 |
8.02e-08 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 52.49 E-value: 8.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 2 SQIEFKNVSKVYPNG------HVGlkNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHgka 75
Cdd:COG4615 326 QTLELRGVTYRYPGEdgdegfTLG--PIDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPVTADN--- 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 76 LLEMRRNIGMIFQHFNLVKRssvlrnvlsgrvgyhptwkmVLGLFPKEDKIKAMDALERVNILDK---YNQR-SD-ELSG 150
Cdd:COG4615 401 REAYRQLFSAVFSDFHLFDR--------------------LLGLDGEADPARARELLERLELDHKvsvEDGRfSTtDLSQ 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 151 GQQQRISIARALCQESEIILADEPVASLDP----LTTKQVMDDLRKinqeLGITILINLH---FVDLAkeygTRIIGLRD 223
Cdd:COG4615 461 GQRKRLALLVALLEDRPILVFDEWAADQDPefrrVFYTELLPELKA----RGKTVIAISHddrYFDLA----DRVLKMDY 532
|
....*.
gi 613390585 224 GEVVYD 229
Cdd:COG4615 533 GKLVEL 538
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
19-238 |
1.03e-07 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 52.22 E-value: 1.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 19 GLKN-INLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKA-------HGKALL-EMRRNIGMIFQH 89
Cdd:PRK11288 267 GLREpISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRsprdairAGIMLCpEDRKAEGIIPVH 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 90 fnlvkrsSVLRNV-LSGRvGYHPTWKMVLGlfPKEDKIKAMDALERVNIldkyNQRSDE-----LSGGQQQRISIARALC 163
Cdd:PRK11288 347 -------SVADNInISAR-RHHLRAGCLIN--NRWEAENADRFIRSLNI----KTPSREqlimnLSGGNQQKAILGRWLS 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 164 QESEIILADEPVASLDpLTTK----QVMDDLrkinQELGITILinlhFV--DLAKEYGT--RIIGLRDGEVVYDGPASEA 235
Cdd:PRK11288 413 EDMKVILLDEPTRGID-VGAKheiyNVIYEL----AAQGVAVL----FVssDLPEVLGVadRIVVMREGRIAGELAREQA 483
|
...
gi 613390585 236 TDD 238
Cdd:PRK11288 484 TER 486
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
11-230 |
1.13e-07 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 50.40 E-value: 1.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 11 KVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLrsvnrlhditsgeifiqgKSITKAHGKALLEMRRNIgmiFQHF 90
Cdd:cd03238 2 TVSGANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLV------------------NEGLYASGKARLISFLPK---FSRN 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 91 NLVKRSSvLRNVLSGRVGYHPTwkmvlglfpkedkikamdalervnildkyNQRSDELSGGQQQRISIARALCQESE--I 168
Cdd:cd03238 61 KLIFIDQ-LQFLIDVGLGYLTL-----------------------------GQKLSTLSGGELQRVKLASELFSEPPgtL 110
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 613390585 169 ILADEPVASLDPLTTKQVMDDLRKINQeLGITILINLHFVDLAKeYGTRII------GLRDGEVVYDG 230
Cdd:cd03238 111 FILDEPSTGLHQQDINQLLEVIKGLID-LGNTVILIEHNLDVLS-SADWIIdfgpgsGKSGGKVVFSG 176
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
17-253 |
2.51e-07 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 51.04 E-value: 2.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 17 HVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSitkahgkallemrrnigmifqhfNLVKRS 96
Cdd:PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSA-----------------------ALIAIS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 97 SVLRNVLSGRVGYHPTWKMvLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILADEPVA 176
Cdd:PRK13545 94 SGLNGQLTGIENIELKGLM-MGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALS 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 613390585 177 SLDPLTTKQVMDDLRKInQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASEATD--DVFSKIYGRTIKEDEK 253
Cdd:PRK13545 173 VGDQTFTKKCLDKMNEF-KEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDhyDEFLKKYNQMSVEERK 250
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
19-179 |
3.56e-07 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 50.43 E-value: 3.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 19 GLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMrrniGMIF-----QHFNLV 93
Cdd:PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLAR----GLVYlpedrQSSGLY 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 94 KRSSVLRNVLSGRVGYHPTWkmvlgLFPKEDKikamDALER----VNI-LDKYNQRSDELSGGQQQRISIARALCQESEI 168
Cdd:PRK15439 354 LDAPLAWNVCALTHNRRGFW-----IKPAREN----AVLERyrraLNIkFNHAEQAARTLSGGNQQKVLIAKCLEASPQL 424
|
170
....*....|.
gi 613390585 169 ILADEPVASLD 179
Cdd:PRK15439 425 LIVDEPTRGVD 435
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
1-179 |
3.68e-07 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 50.50 E-value: 3.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 1 MSQIEF--KNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQ-GKSI--------- 68
Cdd:PRK11819 2 MAQYIYtmNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPApGIKVgylpqepql 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 69 --TK----------AHGKALLEMRRNIGMIF----QHFN-LVKRSSVLRNVLSGRVGyhptWKMvlglfpkEDKIK-AMD 130
Cdd:PRK11819 82 dpEKtvrenveegvAEVKAALDRFNEIYAAYaepdADFDaLAAEQGELQEIIDAADA----WDL-------DSQLEiAMD 150
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 613390585 131 ALErvniLDKYNQRSDELSGGQQQRISIARALCQESEIILADEPVASLD 179
Cdd:PRK11819 151 ALR----CPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
20-179 |
6.01e-07 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 49.73 E-value: 6.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKA-------HGKALL-EMRRNIGmIFQHFN 91
Cdd:PRK10982 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHnaneainHGFALVtEERRSTG-IYAYLD 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 92 lVKRSSVLRNVLS--GRVGYHPTWKMvlglfpKEDKIKAMDALeRVNILDKYNQRSdELSGGQQQRISIARALCQESEII 169
Cdd:PRK10982 343 -IGFNSLISNIRNykNKVGLLDNSRM------KSDTQWVIDSM-RVKTPGHRTQIG-SLSGGNQQKVIIGRWLLTQPEIL 413
|
170
....*....|
gi 613390585 170 LADEPVASLD 179
Cdd:PRK10982 414 MLDEPTRGID 423
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
20-230 |
8.35e-07 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 48.01 E-value: 8.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSV-NRLHD-ITSGEIFIQGKSITKahgkallEMRRNIGMIfQHFNLVKRSS 97
Cdd:cd03232 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLaGRKTAgVITGEILINGRPLDK-------NFQRSTGYV-EQQDVHSPNL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 98 VLRNVLsgrvgyhptwkmvlgLFpkedkikamDALERvnildkynqrsdELSGGQQQRISIARALCQESEIILADEPVAS 177
Cdd:cd03232 95 TVREAL---------------RF---------SALLR------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSG 138
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 613390585 178 LDPLTTKQVMDDLRKINQElGITILINLH--FVDLAKEYGTRIIGLRDGEVVYDG 230
Cdd:cd03232 139 LDSQAAYNIVRFLKKLADS-GQAILCTIHqpSASIFEKFDRLLLLKRGGKTVYFG 192
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
20-182 |
1.24e-06 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 48.37 E-value: 1.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAhgkALLEMRRNIGMIFQ---------HF 90
Cdd:cd03288 37 LKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKL---PLHTLRSRLSIILQdpilfsgsiRF 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 91 NLVKRSSVLRNVLsgrvgyhptWKmVLGLFPKEDKIKA----MDALervnildkYNQRSDELSGGQQQRISIARALCQES 166
Cdd:cd03288 114 NLDPECKCTDDRL---------WE-ALEIAQLKNMVKSlpggLDAV--------VTEGGENFSVGQRQLFCLARAFVRKS 175
|
170
....*....|....*.
gi 613390585 167 EIILADEPVASLDPLT 182
Cdd:cd03288 176 SILIMDEATASIDMAT 191
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
19-236 |
1.32e-06 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 48.85 E-value: 1.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 19 GLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITK-------AHGKALL-EMRRNIGmifqhf 90
Cdd:PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTrspqdglANGIVYIsEDRKRDG------ 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 91 nLVKRSSVLRNV-------LSGRVGY--HPTWKMVLGLFPKEDKIK--AMDalervnildkynQRSDELSGGQQQRISIA 159
Cdd:PRK10762 341 -LVLGMSVKENMsltalryFSRAGGSlkHADEQQAVSDFIRLFNIKtpSME------------QAIGLLSGGNQQKVAIA 407
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 613390585 160 RALCQESEIILADEPVASLDPLTTKQVMDDLRKINQElGITILinLHFVDLAKEYGT--RIIGLRDGEVVYDGPASEAT 236
Cdd:PRK10762 408 RGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSII--LVSSEMPEVLGMsdRILVMHEGRISGEFTREQAT 483
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
20-230 |
1.33e-06 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 48.02 E-value: 1.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTL-------------LRSV-----NRLHDITSGEI-FIQGKSITKAhgkalLEMR 80
Cdd:cd03270 11 LKNVDVDIPRNKLVVITGVSGSGKSSLafdtiyaegqrryVESLsayarQFLGQMDKPDVdSIEGLSPAIA-----IDQK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 81 RnigmifqhFNLVKRSSV---------LRnVLSGRVGYHPTWKMVLGLfpkedkikamdALERVNIldkyNQRSDELSGG 151
Cdd:cd03270 86 T--------TSRNPRSTVgtvteiydyLR-LLFARVGIRERLGFLVDV-----------GLGYLTL----SRSAPTLSGG 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 152 QQQRISIARAL-CQESEII-LADEPVASLDPLTTKQVMDDLRKInQELGITILINLHFVDLAKEyGTRII------GLRD 223
Cdd:cd03270 142 EAQRIRLATQIgSGLTGVLyVLDEPSIGLHPRDNDRLIETLKRL-RDLGNTVLVVEHDEDTIRA-ADHVIdigpgaGVHG 219
|
....*..
gi 613390585 224 GEVVYDG 230
Cdd:cd03270 220 GEIVAQG 226
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
20-46 |
4.43e-06 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 47.33 E-value: 4.43e-06
10 20
....*....|....*....|....*..
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTL 46
Cdd:COG0178 16 LKNIDVDIPRNKLVVITGLSGSGKSSL 42
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
132-179 |
7.99e-06 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 46.73 E-value: 7.99e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 613390585 132 LERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILADEPVASLD 179
Cdd:PRK13409 438 IKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
132-179 |
1.14e-05 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 45.93 E-value: 1.14e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 613390585 132 LERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILADEPVASLD 179
Cdd:COG1245 440 IKPLGLEKLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 487
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
4-179 |
1.70e-05 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 45.62 E-value: 1.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGK---SITKAHGKALLEMR 80
Cdd:PLN03073 509 ISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKvrmAVFSQHHVDGLDLS 588
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 81 RNigmifqhfNLVKRSSVLRNVLSGRVGYHptwkmvLGLFpkedKIKAMDALervnildkynQRSDELSGGQQQRISIAR 160
Cdd:PLN03073 589 SN--------PLLYMMRCFPGVPEQKLRAH------LGSF----GVTGNLAL----------QPMYTLSGGQKSRVAFAK 640
|
170
....*....|....*....
gi 613390585 161 ALCQESEIILADEPVASLD 179
Cdd:PLN03073 641 ITFKKPHILLLDEPSNHLD 659
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
20-46 |
3.79e-05 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 44.68 E-value: 3.79e-05
10 20
....*....|....*....|....*..
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTL 46
Cdd:PRK00349 16 LKNIDLDIPRDKLVVFTGLSGSGKSSL 42
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
20-46 |
3.81e-05 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 44.62 E-value: 3.81e-05
10 20
....*....|....*....|....*..
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTL 46
Cdd:TIGR00630 12 LKNIDVEIPRDKLVVITGLSGSGKSSL 38
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
2-202 |
3.97e-05 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 44.35 E-value: 3.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 2 SQIEFKNVSKVYPNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVnrlhditsGEIF-IQGKSITKAHGKALlemr 80
Cdd:TIGR00954 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRIL--------GELWpVYGGRLTKPAKGKL---- 517
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 81 rnigmifqhFNLVKRSSVLRNVLSGRVGYHPT-WKMVLGLFPKEDKIKAMDALERVNIL------DKYNQRSDELSGGQQ 153
Cdd:TIGR00954 518 ---------FYVPQRPYMTLGTLRDQIIYPDSsEDMKRRGLSDKDLEQILDNVQLTHILereggwSAVQDWMDVLSGGEK 588
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 613390585 154 QRISIARALCQESEIILADEPVASLDPlttkQVMDDLRKINQELGITIL 202
Cdd:TIGR00954 589 QRIAMARLFYHKPQFAILDECTSAVSV----DVEGYMYRLCREFGITLF 633
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
20-174 |
5.97e-05 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 43.62 E-value: 5.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSV---NRLHDItSGEIFIQGKSIT-------------------KAHGKALL 77
Cdd:NF040905 276 VDDVSLNVRRGEIVGIAGLMGAGRTELAMSVfgrSYGRNI-SGTVFKDGKEVDvstvsdaidaglayvtedrKGYGLNLI 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 78 E-MRRNIGMifQHFNLVKRSSVLRNVLSGRVGYHptwkmvlglFPKEDKIKAMDALERVNildkynqrsdELSGGQQQRI 156
Cdd:NF040905 355 DdIKRNITL--ANLGKVSRRGVIDENEEIKVAEE---------YRKKMNIKTPSVFQKVG----------NLSGGNQQKV 413
|
170
....*....|....*...
gi 613390585 157 SIARALCQESEIILADEP 174
Cdd:NF040905 414 VLSKWLFTDPDVLILDEP 431
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
4-61 |
6.05e-05 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 43.73 E-value: 6.05e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYPNGHVgLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVnrLHDIT--SGEI 61
Cdd:PRK15064 320 LEVENLTKGFDNGPL-FKNLNLLLEAGERLAIIGENGVGKTTLLRTL--VGELEpdSGTV 376
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
146-234 |
7.69e-05 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 43.66 E-value: 7.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 146 DELSGGQQQRISIARALCQESEII--LADEPVASLDPLTTKQVMDDLRKINQElGITILINLH---FVDLAKeygtRII- 219
Cdd:PRK00635 475 ATLSGGEQERTALAKHLGAELIGItyILDEPSIGLHPQDTHKLINVIKKLRDQ-GNTVLLVEHdeqMISLAD----RIId 549
|
90 100
....*....|....*....|
gi 613390585 220 -----GLRDGEVVYDGPASE 234
Cdd:PRK00635 550 igpgaGIFGGEVLFNGSPRE 569
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
20-235 |
9.58e-05 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 43.56 E-value: 9.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSVnrlhditSGEI--FIQGK-SITKAHGKALLEMRRnigmifqHFnlvkRS 96
Cdd:TIGR00956 77 LKPMDGLIKPGELTVVLGRPGSGCSTLLKTI-------ASNTdgFHIGVeGVITYDGITPEEIKK-------HY----RG 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 97 SVLRN----VLSGRVGYHPTWKMVLGLFPKEDKIKAMDALERVNILDKYNQRSDEL----------------SGGQQQRI 156
Cdd:TIGR00956 139 DVVYNaetdVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLshtrntkvgndfvrgvSGGERKRV 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 157 SIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLH-FVDLAKEYGTRIIGLRDGEVVYDGPASEA 235
Cdd:TIGR00956 219 SIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYqCSQDAYELFDKVIVLYEGYQIYFGPADKA 298
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
28-213 |
2.17e-04 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 42.08 E-value: 2.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 28 EKGEFAVIVGLSGAGKSTLLRsvnrlhdITSGEI---FiqGKSITKAHGKALLEMRRNIGMiFQHFNLVKRSSV------ 98
Cdd:COG1245 97 KKGKVTGILGPNGIGKSTALK-------ILSGELkpnL--GDYDEEPSWDEVLKRFRGTEL-QDYFKKLANGEIkvahkp 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 99 -----LRNVLSGRVGyhptwkmvlGLFPKEDKIKAMDAL-ERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILAD 172
Cdd:COG1245 167 qyvdlIPKVFKGTVR---------ELLEKVDERGKLDELaEKLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFD 237
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 613390585 173 EPVASLDplttkqvmddlrkINQELGITILINlhfvDLAKE 213
Cdd:COG1245 238 EPSSYLD-------------IYQRLNVARLIR----ELAEE 261
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
4-179 |
2.80e-04 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 41.84 E-value: 2.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYpNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIqGKSitkahgkallemrrni 83
Cdd:TIGR03719 323 IEAENLTKAF-GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI-GET---------------- 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 84 gmifqhfnlVKRSSV--LRNVLSGRvgyHPTWK--------MVLGLFpkedKIKAMDALERVNILDKYNQ-RSDELSGGQ 152
Cdd:TIGR03719 385 ---------VKLAYVdqSRDALDPN---KTVWEeisggldiIKLGKR----EIPSRAYVGRFNFKGSDQQkKVGQLSGGE 448
|
170 180
....*....|....*....|....*..
gi 613390585 153 QQRISIARALCQESEIILADEPVASLD 179
Cdd:TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLD 475
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
35-179 |
3.00e-04 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 41.72 E-value: 3.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 35 IVGLSGAGKSTLLRsvnrlhdITSGEI---FiqGKSITKAHGKALLEMRRNIGMiFQHFNLVK----RSSV-------LR 100
Cdd:PRK13409 104 ILGPNGIGKTTAVK-------ILSGELipnL--GDYEEEPSWDEVLKRFRGTEL-QNYFKKLYngeiKVVHkpqyvdlIP 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 101 NVLSGRVGyhptwkmvlGLFPKEDKIKAMDAL-ERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILADEPVASLD 179
Cdd:PRK13409 174 KVFKGKVR---------ELLKKVDERGKLDEVvERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD 244
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
129-179 |
3.68e-04 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 40.81 E-value: 3.68e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 613390585 129 MDALERVNILDkynQRSDELSGGQQQRISIARALCQESEIILADEPVASLD 179
Cdd:cd03236 124 VDQLELRHVLD---RNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLD 171
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
114-219 |
4.75e-04 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 39.86 E-value: 4.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 114 KMVLG-LFPKEDKikamDALERVNILdkYNQRSDELSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRK 192
Cdd:cd03222 43 KILAGqLIPNGDN----DEWDGITPV--YKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRR 116
|
90 100
....*....|....*....|....*..
gi 613390585 193 INQELGITILINLHFVDLAKEYGTRII 219
Cdd:cd03222 117 LSEEGKKTALVVEHDLAVLDYLSDRIH 143
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
148-231 |
6.21e-04 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 40.98 E-value: 6.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 148 LSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINL-----HFVDLAKEygtrIIGLR 222
Cdd:PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLlqpapETFDLFDD----IILLS 412
|
....*....
gi 613390585 223 DGEVVYDGP 231
Cdd:PLN03140 413 EGQIVYQGP 421
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
20-47 |
6.96e-04 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 40.77 E-value: 6.96e-04
10 20
....*....|....*....|....*...
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLL 47
Cdd:TIGR00630 624 LKNITVSIPLGLFTCITGVSGSGKSTLI 651
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
20-47 |
1.22e-03 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 40.06 E-value: 1.22e-03
10 20
....*....|....*....|....*...
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLL 47
Cdd:PRK00349 625 LKNVDVEIPLGKFTCVTGVSGSGKSTLI 652
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
20-231 |
1.24e-03 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 39.13 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLrsVNRLHDITSGEIFIQGksiTKAHGKALLEMRRNIGMIFQhfnlVKRSSVL 99
Cdd:cd03271 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLI--NDTLYPALARRLHLKK---EQPGNHDRIEGLEHIDKVIV----IDQSPIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 100 RN---------------------VLSGR--------VGYH-PTWKMVLGL--------FPKEDKIKA-MDALERVNiLD- 139
Cdd:cd03271 82 RTprsnpatytgvfdeirelfceVCKGKrynretleVRYKgKSIADVLDMtveealefFENIPKIARkLQTLCDVG-LGy 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 140 -KYNQRSDELSGGQQQRISIARALCQESE---IILADEPVASLDPLTTKQVMDDLRKInQELGITILINLHFVDLAK--E 213
Cdd:cd03271 161 iKLGQPATTLSGGEAQRIKLAKELSKRSTgktLYILDEPTTGLHFHDVKKLLEVLQRL-VDKGNTVVVIEHNLDVIKcaD 239
|
250 260
....*....|....*....|....
gi 613390585 214 YgtrII------GLRDGEVVYDGP 231
Cdd:cd03271 240 W---IIdlgpegGDGGGQVVASGT 260
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
20-179 |
1.99e-03 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 38.31 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 20 LKNINLNIEK------------GEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMRRNIGMIF 87
Cdd:PRK13541 4 LHQLQFNIEQknlfdlsitflpSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 88 QhfnlvkrSSVLRNVlsgrvgyhptwKMVLGLFPKEDKIKAmdALERVNILDKYNQRSDELSGGQQQRISIARALCQESE 167
Cdd:PRK13541 84 E-------MTVFENL-----------KFWSEIYNSAETLYA--AIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSD 143
|
170
....*....|..
gi 613390585 168 IILADEPVASLD 179
Cdd:PRK13541 144 LWLLDEVETNLS 155
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
20-50 |
2.73e-03 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 38.85 E-value: 2.73e-03
10 20 30
....*....|....*....|....*....|.
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSV 50
Cdd:COG0178 621 LKNVDVEIPLGVLTCVTGVSGSGKSTLVNDI 651
|
|
| COG4637 |
COG4637 |
Predicted ATPase [General function prediction only]; |
19-61 |
2.78e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443675 [Multi-domain] Cd Length: 371 Bit Score: 38.37 E-value: 2.78e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 613390585 19 GLKNI-NLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEI 61
Cdd:COG4637 9 NFKSLrDLELPLGPLTVLIGANGSGKSNLLDALRFLSDAARGGL 52
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
4-63 |
5.33e-03 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 37.79 E-value: 5.33e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 4 IEFKNVSKVYpNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFI 63
Cdd:PRK11819 325 IEAENLSKSF-GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI 383
|
|
| YjeQ_EngC |
cd01854 |
Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases; ... |
29-74 |
6.35e-03 |
|
Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases; YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain.
Pssm-ID: 206747 [Multi-domain] Cd Length: 211 Bit Score: 36.99 E-value: 6.35e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 613390585 29 KGEFAVIVGLSGAGKSTLLrsvNRLHditsGEIFIQGKSITKAHGK 74
Cdd:cd01854 84 KGKTSVLVGQSGVGKSTLL---NALL----PELVLATGEISEKLGR 122
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
29-214 |
7.39e-03 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 36.18 E-value: 7.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 29 KGEFAVIVGLSGAGKSTLLRSVNrlhditsgeifiqgksitkahgkallemrrnigmifqhFNLVKRSSVLRNVLSGRVG 108
Cdd:cd03227 20 EGSLTIITGPNGSGKSTILDAIG--------------------------------------LALGGAQSATRRRSGVKAG 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613390585 109 YhptwkmvlglfpkedkIKAMDALERVNILDKynqrsdeLSGGQQQRISIARAL----CQESEIILADEPVASLDPLTTK 184
Cdd:cd03227 62 C----------------IVAAVSAELIFTRLQ-------LSGGEKELSALALILalasLKPRPLYILDEIDRGLDPRDGQ 118
|
170 180 190
....*....|....*....|....*....|
gi 613390585 185 QVMDDLRKINQELGITILINlHFVDLAKEY 214
Cdd:cd03227 119 ALAEAILEHLVKGAQVIVIT-HLPELAELA 147
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
20-70 |
9.64e-03 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 36.69 E-value: 9.64e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 613390585 20 LKNINLNIEKGEFAVIVGLSGAGKSTLLRSV--NRLHDITSGEIFIQGKSITK 70
Cdd:PRK09580 17 LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLagREDYEVTGGTVEFKGKDLLE 69
|
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