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Conserved domains on  [gi|613389615|gb|EZZ93487|]
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argininosuccinate synthase [Staphylococcus aureus VET0057R]

Protein Classification

argininosuccinate synthase( domain architecture ID 10011457)

argininosuccinate synthase reversibly catalyzes the ATP-dependent condensation of a citrulline with an aspartate to give argininosuccinate

EC:  6.3.4.5
PubMed:  2123815

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK00509 PRK00509
argininosuccinate synthase; Provisional
1-396 0e+00

argininosuccinate synthase; Provisional


:

Pssm-ID: 234785  Cd Length: 399  Bit Score: 726.47  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615   1 MKEKIVLAYSGGLDTSVAVQWLIDK-GYDVVACCLDVGEGKDLDIVYKKALDMGAVECHIIDATKEFSDEYVSYAIKGNL 79
Cdd:PRK00509   1 MKKKVVLAYSGGLDTSVIIKWLKETyGCEVIAFTADVGQGEELEPIREKALKSGASEIYVEDLREEFVRDYVFPAIRANA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615  80 MYENAYPLVSALSRPLIAKKLVEIAEKTNSVGIAHGCTGKGNDQVRFEVAIKALNPSLKAFAPVREWAW-SREEEIDYAI 158
Cdd:PRK00509  81 LYEGKYPLGTALARPLIAKKLVEIARKEGADAVAHGCTGKGNDQVRFELGIAALAPDLKVIAPWREWDLkSREELIAYAE 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615 159 KHNIPVSINHDSPYSIDQNLWGRANECGILEDPYAVPPEDAFDLTNALEETPDTADEIILTFDKGIPVQIDGKTYELDDL 238
Cdd:PRK00509 161 EHGIPIPVTKKSPYSIDANLWHRSIEGGILEDPWNEPPEDVYEWTVSPEDAPDEPEYVEIEFEKGVPVAINGEALSPAEL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615 239 ILTLNALAGKHGIGRIDHVENRLVGIKSREIYEAPAAEVILKAHKALETITLTKDVAHFKPIIEKQFAEQLYNGLWFSPL 318
Cdd:PRK00509 241 IEELNELAGKHGIGRIDIVENRLVGIKSRGVYETPGGTILIKAHRALESLTLDREVAHFKDELEPKYAELVYNGLWFSPL 320
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 613389615 319 TDSLKLFIDSTQQYVSGDVRIKLFKGNAIVNGRKSPYTLYDEKLATYTKEDAFNQDAAVGFIDIYGLPTQVNAMLHGG 396
Cdd:PRK00509 321 REALQAFIDETQEHVTGEVRLKLYKGNAIVVGRKSPNSLYDEDLATYEEDDVYDQKDAEGFIKLWGLPSKIAALVNKK 398
 
Name Accession Description Interval E-value
PRK00509 PRK00509
argininosuccinate synthase; Provisional
1-396 0e+00

argininosuccinate synthase; Provisional


Pssm-ID: 234785  Cd Length: 399  Bit Score: 726.47  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615   1 MKEKIVLAYSGGLDTSVAVQWLIDK-GYDVVACCLDVGEGKDLDIVYKKALDMGAVECHIIDATKEFSDEYVSYAIKGNL 79
Cdd:PRK00509   1 MKKKVVLAYSGGLDTSVIIKWLKETyGCEVIAFTADVGQGEELEPIREKALKSGASEIYVEDLREEFVRDYVFPAIRANA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615  80 MYENAYPLVSALSRPLIAKKLVEIAEKTNSVGIAHGCTGKGNDQVRFEVAIKALNPSLKAFAPVREWAW-SREEEIDYAI 158
Cdd:PRK00509  81 LYEGKYPLGTALARPLIAKKLVEIARKEGADAVAHGCTGKGNDQVRFELGIAALAPDLKVIAPWREWDLkSREELIAYAE 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615 159 KHNIPVSINHDSPYSIDQNLWGRANECGILEDPYAVPPEDAFDLTNALEETPDTADEIILTFDKGIPVQIDGKTYELDDL 238
Cdd:PRK00509 161 EHGIPIPVTKKSPYSIDANLWHRSIEGGILEDPWNEPPEDVYEWTVSPEDAPDEPEYVEIEFEKGVPVAINGEALSPAEL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615 239 ILTLNALAGKHGIGRIDHVENRLVGIKSREIYEAPAAEVILKAHKALETITLTKDVAHFKPIIEKQFAEQLYNGLWFSPL 318
Cdd:PRK00509 241 IEELNELAGKHGIGRIDIVENRLVGIKSRGVYETPGGTILIKAHRALESLTLDREVAHFKDELEPKYAELVYNGLWFSPL 320
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 613389615 319 TDSLKLFIDSTQQYVSGDVRIKLFKGNAIVNGRKSPYTLYDEKLATYTKEDAFNQDAAVGFIDIYGLPTQVNAMLHGG 396
Cdd:PRK00509 321 REALQAFIDETQEHVTGEVRLKLYKGNAIVVGRKSPNSLYDEDLATYEEDDVYDQKDAEGFIKLWGLPSKIAALVNKK 398
ArgG COG0137
Argininosuccinate synthase [Amino acid transport and metabolism]; Argininosuccinate synthase ...
3-396 0e+00

Argininosuccinate synthase [Amino acid transport and metabolism]; Argininosuccinate synthase is part of the Pathway/BioSystem: Arginine biosynthesis


Pssm-ID: 439907  Cd Length: 397  Bit Score: 686.02  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615   3 EKIVLAYSGGLDTSVAVQWLIDK-GYDVVACCLDVGEGKDLDIVYKKALDMGAVECHIIDATKEFSDEYVSYAIKGNLMY 81
Cdd:COG0137    1 KKVVLAYSGGLDTSVIIPWLKEKyGYEVIAVTADVGQGEDLEAIEEKALKLGASKAYVVDAREEFVEDYVFPAIKANALY 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615  82 ENAYPLVSALSRPLIAKKLVEIAEKTNSVGIAHGCTGKGNDQVRFEVAIKALNPSLKAFAPVREWAW-SREEEIDYAIKH 160
Cdd:COG0137   81 EGKYPLGTALARPLIAKKLVEIAREEGADAVAHGCTGKGNDQVRFELAIRALAPDLKIIAPWREWDLkSREEEIEYAEEH 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615 161 NIPVSINHDSPYSIDQNLWGRANECGILEDPYAVPPEDAFDLTNALEETPDTADEIILTFDKGIPVQIDGKTYELDDLIL 240
Cdd:COG0137  161 GIPVPATKEKPYSIDENLWGRSIEGGELEDPWNEPPEDAYEWTVSPEDAPDEPEYVTITFEKGVPVALNGEKLSPVELIE 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615 241 TLNALAGKHGIGRIDHVENRLVGIKSREIYEAPAAEVILKAHKALETITLTKDVAHFKPIIEKQFAEQLYNGLWFSPLTD 320
Cdd:COG0137  241 ELNEIGGKHGVGRIDIVENRLVGIKSRGVYEAPGATILITAHRALESLTLDRETLHFKDILDQKYAELVYNGLWFSPLRE 320
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 613389615 321 SLKLFIDSTQQYVSGDVRIKLFKGNAIVNGRKSPYTLYDEKLATYTKEDAFNQDAAVGFIDIYGLPTQVNAMLHGG 396
Cdd:COG0137  321 ALDAFIDETQKRVTGTVRLKLYKGNATVVGRKSPYSLYDEDLATYEEDDVFDQKDAEGFIKLFGLPLRVAARVRKK 396
ASS cd01999
argininosuccinate_synthase (ASS); Argininosuccinate synthase (ASS; EC 6.3.4.5) is a urea cycle ...
3-386 0e+00

argininosuccinate_synthase (ASS); Argininosuccinate synthase (ASS; EC 6.3.4.5) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate. In humans, a defect in the ASS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. ASS is a homotetrameric enzyme of about 400 amino-acid residues. An arginine residue seems to be important for the enzyme's catalytic mechanism. The sequences of ASS from various prokaryotes, archaeabacteria and eukaryotes show significant similarity.


Pssm-ID: 467503  Cd Length: 386  Bit Score: 611.46  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615   3 EKIVLAYSGGLDTSVAVQWLIDK-GYDVVACCLDVGEGKDLDIVYKKALDMGAVECHIIDATKEFSDEYVSYAIKGNLMY 81
Cdd:cd01999    1 KKVVLAYSGGLDTSVILKWLKEEyGYEVIAFTADLGQGDEEEEIEEKALKLGAVKVYVVDLREEFAEDYIFPAIKANAIY 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615  82 ENAYPLVSALSRPLIAKKLVEIAEKTNSVGIAHGCTGKGNDQVRFEVAIKALNPSLKAFAPVREWA-WSREEEIDYAIKH 160
Cdd:cd01999   81 EGRYPLGTALARPLIAKKLVEVAREEGATAVAHGCTGKGNDQVRFELAIKALAPDLKVIAPWRDWNfLTRAEEIAYAKKH 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615 161 NIPVSINHDSPYSIDQNLWGRANECGILEDPYAVPPEDAFDLTNALEETPDTADEIILTFDKGIPVQIDGKTYELDDLIL 240
Cdd:cd01999  161 GIPVPVTKKKPYSIDENLWGRSYEGGDLEDPWNEPPEDAFEWTVSPEKAPDEPEYVTIEFEKGVPVAVNGEKLDPVELIE 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615 241 TLNALAGKHGIGRIDHVENRLVGIKSREIYEAPAAEVILKAHKALETITLTKDVAHFKPIIEKQFAEQLYNGLWFSPLTD 320
Cdd:cd01999  241 KLNEIAGRHGVGRIDIVENRLVGIKSRGVYEAPGATLLIKAHRDLEDLTLDREVLHFKDIVSRKYAELVYNGLWFDPLRE 320
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 613389615 321 SLKLFIDSTQQYVSGDVRIKLFKGNAIVNGRKSPYTLYDEKLATYTKEDAFNQDAAVGFIDIYGLP 386
Cdd:cd01999  321 ALEAFIDKTQERVTGEVRLKLYKGNVIVVGRESPNSLYSEELATYEEGDGFDQKDAEGFIKIHGLQ 386
Arginosuc_synth pfam00764
Arginosuccinate synthase; This family contains a PP-loop motif.
6-389 0e+00

Arginosuccinate synthase; This family contains a PP-loop motif.


Pssm-ID: 279148  Cd Length: 386  Bit Score: 589.70  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615    6 VLAYSGGLDTSVAVQWLIDK-GYDVVACCLDVGEG-KDLDIVYKKALDMGAVECHIIDATKEFSDEYVSYAIKGNLMYEN 83
Cdd:pfam00764   1 VLAYSGGLDTSVCIPWLKEQgGYEVIAVAVDVGQGgEDIDEAREKALKLGAVKHYVIDAKEEFVEDYIFPAIQANALYED 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615   84 AYPLVSALSRPLIAKKLVEIAEKTNSVGIAHGCTGKGNDQVRFEVAIKALNPSLKAFAPVREWAWSREEEIDYAIKHNIP 163
Cdd:pfam00764  81 RYPLGTALARPLIAKKLVEAAKKEGASAVAHGCTGKGNDQVRFEVSFRSLAPDLKVIAPVRDPNLTREEEIEYAEEHGIP 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615  164 VSINHDSPYSIDQNLWGRANECGILEDPYAVPPEDAFDLTNALEETPDTADEIILTFDKGIPVQIDGKTYELDDLILTLN 243
Cdd:pfam00764 161 IPVTKKSPYSIDENLWGRSIEAGILEDPWNAPPEDIYEWTKDPAKAPDEPDIVEIGFEKGVPVALDGEPVSPLELIEKLN 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615  244 ALAGKHGIGRIDHVENRLVGIKSREIYEAPAAEVILKAHKALETITLTKDVAHFKPIIEKQFAEQLYNGLWFSPLTDSLK 323
Cdd:pfam00764 241 EIAGAHGVGRIDIVEDRLVGIKSREIYEAPAATVLITAHRDLENLTLTREVLRFKRIVDQKWAELVYDGLWFSPLKEALD 320
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 613389615  324 LFIDSTQQYVSGDVRIKLFKGNAIVNGRKSPYTLYDEKLATYTKEDAFNQDAAVGFIDIYGLPTQV 389
Cdd:pfam00764 321 AFIDKTQERVTGTVRVKLHKGSAIVLGRRSPYSLYDEELVSYDEGDTFDQTDATGFIKIHGLQAKI 386
argG TIGR00032
argininosuccinate synthase; argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a ...
4-393 0e+00

argininosuccinate synthase; argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria. [Amino acid biosynthesis, Glutamate family]


Pssm-ID: 199987  Cd Length: 394  Bit Score: 544.69  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615    4 KIVLAYSGGLDTSVAVQWLIDKGYDVVACCLDVGEG-KDLDIVYKKALDMGAVECHIIDATKEFSDEYVSYAIKGNLMYE 82
Cdd:TIGR00032   1 KVVLAYSGGLDTSVCLKWLREKGYEVIAYTADVGQPeEDIDAIPEKALEYGAENHYTIDAREEFVKDYGFAAIQANAFYE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615   83 NAYPLVSALSRPLIAKKLVEIAEKTNSVGIAHGCTGKGNDQVRFEVAIKALNPSLKAFAPVREWAWSREEEIDYAIKHNI 162
Cdd:TIGR00032  81 GTYPLSTALARPLIAKKLVEAAKKEGANAVAHGCTGKGNDQERFERSIRLLNPDLKVIAPWRDLNFTREEEIEYAIQCGI 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615  163 PVSINHDSPYSIDQNLWGRANECGILEDPYAVPPEDAFDLT-NALEETPDTADEIILTFDKGIPVQIDGKTYELDDLILT 241
Cdd:TIGR00032 161 PYPMSKEKPYSIDENLWGRSIEAGILEDPSTEPPEDIYMWTkFPDEATPDEPEVVTIDFEQGVPVALNGVSLDPVELILE 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615  242 LNALAGKHGIGRIDHVENRLVGIKSREIYEAPAAEVILKAHKALETITLTKDVAHFKPIIEKQFAEQLYNGLWFSPLTDS 321
Cdd:TIGR00032 241 ANEIAGKHGVGRIDIIENRIIGLKSREIYEAPGAALLIIAHRDLETLTLTRDVLEFKDIVEEQYSELIYQGLWFDPLAEA 320
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 613389615  322 LKLFIDSTQQYVSGDVRIKLFKGNAIVNGRKSPYTLYDEKLATYTKEDAFNQDAAVGFIDIYGLPTQVNAML 393
Cdd:TIGR00032 321 LDAFIRKTQERVTGTVRVKLFKGNAIVIGRTSPYSLYDEELVSMEKDDVFDPRDAIGFITMRGLQIKDYREK 392
 
Name Accession Description Interval E-value
PRK00509 PRK00509
argininosuccinate synthase; Provisional
1-396 0e+00

argininosuccinate synthase; Provisional


Pssm-ID: 234785  Cd Length: 399  Bit Score: 726.47  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615   1 MKEKIVLAYSGGLDTSVAVQWLIDK-GYDVVACCLDVGEGKDLDIVYKKALDMGAVECHIIDATKEFSDEYVSYAIKGNL 79
Cdd:PRK00509   1 MKKKVVLAYSGGLDTSVIIKWLKETyGCEVIAFTADVGQGEELEPIREKALKSGASEIYVEDLREEFVRDYVFPAIRANA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615  80 MYENAYPLVSALSRPLIAKKLVEIAEKTNSVGIAHGCTGKGNDQVRFEVAIKALNPSLKAFAPVREWAW-SREEEIDYAI 158
Cdd:PRK00509  81 LYEGKYPLGTALARPLIAKKLVEIARKEGADAVAHGCTGKGNDQVRFELGIAALAPDLKVIAPWREWDLkSREELIAYAE 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615 159 KHNIPVSINHDSPYSIDQNLWGRANECGILEDPYAVPPEDAFDLTNALEETPDTADEIILTFDKGIPVQIDGKTYELDDL 238
Cdd:PRK00509 161 EHGIPIPVTKKSPYSIDANLWHRSIEGGILEDPWNEPPEDVYEWTVSPEDAPDEPEYVEIEFEKGVPVAINGEALSPAEL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615 239 ILTLNALAGKHGIGRIDHVENRLVGIKSREIYEAPAAEVILKAHKALETITLTKDVAHFKPIIEKQFAEQLYNGLWFSPL 318
Cdd:PRK00509 241 IEELNELAGKHGIGRIDIVENRLVGIKSRGVYETPGGTILIKAHRALESLTLDREVAHFKDELEPKYAELVYNGLWFSPL 320
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 613389615 319 TDSLKLFIDSTQQYVSGDVRIKLFKGNAIVNGRKSPYTLYDEKLATYTKEDAFNQDAAVGFIDIYGLPTQVNAMLHGG 396
Cdd:PRK00509 321 REALQAFIDETQEHVTGEVRLKLYKGNAIVVGRKSPNSLYDEDLATYEEDDVYDQKDAEGFIKLWGLPSKIAALVNKK 398
ArgG COG0137
Argininosuccinate synthase [Amino acid transport and metabolism]; Argininosuccinate synthase ...
3-396 0e+00

Argininosuccinate synthase [Amino acid transport and metabolism]; Argininosuccinate synthase is part of the Pathway/BioSystem: Arginine biosynthesis


Pssm-ID: 439907  Cd Length: 397  Bit Score: 686.02  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615   3 EKIVLAYSGGLDTSVAVQWLIDK-GYDVVACCLDVGEGKDLDIVYKKALDMGAVECHIIDATKEFSDEYVSYAIKGNLMY 81
Cdd:COG0137    1 KKVVLAYSGGLDTSVIIPWLKEKyGYEVIAVTADVGQGEDLEAIEEKALKLGASKAYVVDAREEFVEDYVFPAIKANALY 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615  82 ENAYPLVSALSRPLIAKKLVEIAEKTNSVGIAHGCTGKGNDQVRFEVAIKALNPSLKAFAPVREWAW-SREEEIDYAIKH 160
Cdd:COG0137   81 EGKYPLGTALARPLIAKKLVEIAREEGADAVAHGCTGKGNDQVRFELAIRALAPDLKIIAPWREWDLkSREEEIEYAEEH 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615 161 NIPVSINHDSPYSIDQNLWGRANECGILEDPYAVPPEDAFDLTNALEETPDTADEIILTFDKGIPVQIDGKTYELDDLIL 240
Cdd:COG0137  161 GIPVPATKEKPYSIDENLWGRSIEGGELEDPWNEPPEDAYEWTVSPEDAPDEPEYVTITFEKGVPVALNGEKLSPVELIE 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615 241 TLNALAGKHGIGRIDHVENRLVGIKSREIYEAPAAEVILKAHKALETITLTKDVAHFKPIIEKQFAEQLYNGLWFSPLTD 320
Cdd:COG0137  241 ELNEIGGKHGVGRIDIVENRLVGIKSRGVYEAPGATILITAHRALESLTLDRETLHFKDILDQKYAELVYNGLWFSPLRE 320
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 613389615 321 SLKLFIDSTQQYVSGDVRIKLFKGNAIVNGRKSPYTLYDEKLATYTKEDAFNQDAAVGFIDIYGLPTQVNAMLHGG 396
Cdd:COG0137  321 ALDAFIDETQKRVTGTVRLKLYKGNATVVGRKSPYSLYDEDLATYEEDDVFDQKDAEGFIKLFGLPLRVAARVRKK 396
ASS cd01999
argininosuccinate_synthase (ASS); Argininosuccinate synthase (ASS; EC 6.3.4.5) is a urea cycle ...
3-386 0e+00

argininosuccinate_synthase (ASS); Argininosuccinate synthase (ASS; EC 6.3.4.5) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate. In humans, a defect in the ASS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. ASS is a homotetrameric enzyme of about 400 amino-acid residues. An arginine residue seems to be important for the enzyme's catalytic mechanism. The sequences of ASS from various prokaryotes, archaeabacteria and eukaryotes show significant similarity.


Pssm-ID: 467503  Cd Length: 386  Bit Score: 611.46  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615   3 EKIVLAYSGGLDTSVAVQWLIDK-GYDVVACCLDVGEGKDLDIVYKKALDMGAVECHIIDATKEFSDEYVSYAIKGNLMY 81
Cdd:cd01999    1 KKVVLAYSGGLDTSVILKWLKEEyGYEVIAFTADLGQGDEEEEIEEKALKLGAVKVYVVDLREEFAEDYIFPAIKANAIY 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615  82 ENAYPLVSALSRPLIAKKLVEIAEKTNSVGIAHGCTGKGNDQVRFEVAIKALNPSLKAFAPVREWA-WSREEEIDYAIKH 160
Cdd:cd01999   81 EGRYPLGTALARPLIAKKLVEVAREEGATAVAHGCTGKGNDQVRFELAIKALAPDLKVIAPWRDWNfLTRAEEIAYAKKH 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615 161 NIPVSINHDSPYSIDQNLWGRANECGILEDPYAVPPEDAFDLTNALEETPDTADEIILTFDKGIPVQIDGKTYELDDLIL 240
Cdd:cd01999  161 GIPVPVTKKKPYSIDENLWGRSYEGGDLEDPWNEPPEDAFEWTVSPEKAPDEPEYVTIEFEKGVPVAVNGEKLDPVELIE 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615 241 TLNALAGKHGIGRIDHVENRLVGIKSREIYEAPAAEVILKAHKALETITLTKDVAHFKPIIEKQFAEQLYNGLWFSPLTD 320
Cdd:cd01999  241 KLNEIAGRHGVGRIDIVENRLVGIKSRGVYEAPGATLLIKAHRDLEDLTLDREVLHFKDIVSRKYAELVYNGLWFDPLRE 320
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 613389615 321 SLKLFIDSTQQYVSGDVRIKLFKGNAIVNGRKSPYTLYDEKLATYTKEDAFNQDAAVGFIDIYGLP 386
Cdd:cd01999  321 ALEAFIDKTQERVTGEVRLKLYKGNVIVVGRESPNSLYSEELATYEEGDGFDQKDAEGFIKIHGLQ 386
Arginosuc_synth pfam00764
Arginosuccinate synthase; This family contains a PP-loop motif.
6-389 0e+00

Arginosuccinate synthase; This family contains a PP-loop motif.


Pssm-ID: 279148  Cd Length: 386  Bit Score: 589.70  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615    6 VLAYSGGLDTSVAVQWLIDK-GYDVVACCLDVGEG-KDLDIVYKKALDMGAVECHIIDATKEFSDEYVSYAIKGNLMYEN 83
Cdd:pfam00764   1 VLAYSGGLDTSVCIPWLKEQgGYEVIAVAVDVGQGgEDIDEAREKALKLGAVKHYVIDAKEEFVEDYIFPAIQANALYED 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615   84 AYPLVSALSRPLIAKKLVEIAEKTNSVGIAHGCTGKGNDQVRFEVAIKALNPSLKAFAPVREWAWSREEEIDYAIKHNIP 163
Cdd:pfam00764  81 RYPLGTALARPLIAKKLVEAAKKEGASAVAHGCTGKGNDQVRFEVSFRSLAPDLKVIAPVRDPNLTREEEIEYAEEHGIP 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615  164 VSINHDSPYSIDQNLWGRANECGILEDPYAVPPEDAFDLTNALEETPDTADEIILTFDKGIPVQIDGKTYELDDLILTLN 243
Cdd:pfam00764 161 IPVTKKSPYSIDENLWGRSIEAGILEDPWNAPPEDIYEWTKDPAKAPDEPDIVEIGFEKGVPVALDGEPVSPLELIEKLN 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615  244 ALAGKHGIGRIDHVENRLVGIKSREIYEAPAAEVILKAHKALETITLTKDVAHFKPIIEKQFAEQLYNGLWFSPLTDSLK 323
Cdd:pfam00764 241 EIAGAHGVGRIDIVEDRLVGIKSREIYEAPAATVLITAHRDLENLTLTREVLRFKRIVDQKWAELVYDGLWFSPLKEALD 320
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 613389615  324 LFIDSTQQYVSGDVRIKLFKGNAIVNGRKSPYTLYDEKLATYTKEDAFNQDAAVGFIDIYGLPTQV 389
Cdd:pfam00764 321 AFIDKTQERVTGTVRVKLHKGSAIVLGRRSPYSLYDEELVSYDEGDTFDQTDATGFIKIHGLQAKI 386
argG TIGR00032
argininosuccinate synthase; argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a ...
4-393 0e+00

argininosuccinate synthase; argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria. [Amino acid biosynthesis, Glutamate family]


Pssm-ID: 199987  Cd Length: 394  Bit Score: 544.69  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615    4 KIVLAYSGGLDTSVAVQWLIDKGYDVVACCLDVGEG-KDLDIVYKKALDMGAVECHIIDATKEFSDEYVSYAIKGNLMYE 82
Cdd:TIGR00032   1 KVVLAYSGGLDTSVCLKWLREKGYEVIAYTADVGQPeEDIDAIPEKALEYGAENHYTIDAREEFVKDYGFAAIQANAFYE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615   83 NAYPLVSALSRPLIAKKLVEIAEKTNSVGIAHGCTGKGNDQVRFEVAIKALNPSLKAFAPVREWAWSREEEIDYAIKHNI 162
Cdd:TIGR00032  81 GTYPLSTALARPLIAKKLVEAAKKEGANAVAHGCTGKGNDQERFERSIRLLNPDLKVIAPWRDLNFTREEEIEYAIQCGI 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615  163 PVSINHDSPYSIDQNLWGRANECGILEDPYAVPPEDAFDLT-NALEETPDTADEIILTFDKGIPVQIDGKTYELDDLILT 241
Cdd:TIGR00032 161 PYPMSKEKPYSIDENLWGRSIEAGILEDPSTEPPEDIYMWTkFPDEATPDEPEVVTIDFEQGVPVALNGVSLDPVELILE 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615  242 LNALAGKHGIGRIDHVENRLVGIKSREIYEAPAAEVILKAHKALETITLTKDVAHFKPIIEKQFAEQLYNGLWFSPLTDS 321
Cdd:TIGR00032 241 ANEIAGKHGVGRIDIIENRIIGLKSREIYEAPGAALLIIAHRDLETLTLTRDVLEFKDIVEEQYSELIYQGLWFDPLAEA 320
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 613389615  322 LKLFIDSTQQYVSGDVRIKLFKGNAIVNGRKSPYTLYDEKLATYTKEDAFNQDAAVGFIDIYGLPTQVNAML 393
Cdd:TIGR00032 321 LDAFIRKTQERVTGTVRVKLFKGNAIVIGRTSPYSLYDEELVSMEKDDVFDPRDAIGFITMRGLQIKDYREK 392
PLN00200 PLN00200
argininosuccinate synthase; Provisional
1-396 1.11e-158

argininosuccinate synthase; Provisional


Pssm-ID: 177791  Cd Length: 404  Bit Score: 452.66  E-value: 1.11e-158
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615   1 MKEKIVLAYSGGLDTSVAVQWLIDK-GYDVVACCLDVGEG-KDLDIVYKKALDMGAVECHIIDATKEFSDEYVSYAIKGN 78
Cdd:PLN00200   4 KLNKVVLAYSGGLDTSVILKWLRENyGCEVVCFTADVGQGiEELEGLEAKAKASGAKQLVVKDLREEFVRDYIFPCLRAN 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615  79 LMYENAYPLVSALSRPLIAKKLVEIAEKTNSVGIAHGCTGKGNDQVRFEVAIKALNPSLKAFAPVREWAW-SREEEIDYA 157
Cdd:PLN00200  84 AIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATGKGNDQVRFELTFFALNPELKVVAPWREWDIkGREDLIEYA 163
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615 158 IKHNIPVSINHDSPYSIDQNLWGRANECGILEDPYAVPPEDAFDLTNALEETPDTADEIILTFDKGIPVQIDGKTYELDD 237
Cdd:PLN00200 164 KKHNIPVPVTKKSIYSRDRNLWHISYEGDILEDPANEPKEDMFMMSVSPEAAPDQPEYIEIEFEKGLPVAINGKTLSPAT 243
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615 238 LILTLNALAGKHGIGRIDHVENRLVGIKSREIYEAPAAEVILKAHKALETITLTKDVAHFKPIIEKQFAEQLYNGLWFSP 317
Cdd:PLN00200 244 LLTKLNEIGGKHGIGRIDMVENRFVGMKSRGVYETPGGTILFAAHRELESLTLDRETMQVKDSLALKYAELVYNGFWFDP 323
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615 318 LTDSLKLFIDSTQQYVSGDVRIKLFKGNAIVNGRKSPYTLYDEKLATYTKED-AFNQDAAVGFIDIYGLPTQVNAMLHGG 396
Cdd:PLN00200 324 ERESMDAFMEKITETTTGSVRLKLYKGNVSVAGRKSPYSLYRQDISSFEEGGgIYNQADAAGFIRLYALRLRTRAMLRKK 403
PRK13820 PRK13820
argininosuccinate synthase; Provisional
1-385 1.93e-158

argininosuccinate synthase; Provisional


Pssm-ID: 237521  Cd Length: 394  Bit Score: 451.31  E-value: 1.93e-158
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615   1 MKEKIVLAYSGGLDTSVAVQWLIDK-GYD-VVACCLDVGEGK-DLDIVYKKAlDMGAVECHIIDATKEFSDEYVSYAIKG 77
Cdd:PRK13820   1 MMKKVVLAYSGGLDTSVCVPLLKEKyGYDeVITVTVDVGQPEeEIKEAEEKA-KKLGDKHYTIDAKEEFAKDYIFPAIKA 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615  78 NLMYEnAYPLVSALSRPLIAKKLVEIAEKTNSVGIAHGCTGKGNDQVRFEVAIKALNpsLKAFAPVREWAWSREEEIDYA 157
Cdd:PRK13820  80 NALYE-GYPLGTALARPLIAEKIVEVAEKEGASAIAHGCTGKGNDQLRFEAVFRASD--LEVIAPIRELNLTREWEIEYA 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615 158 IKHNIPVSINHDSPYSIDQNLWGRANECGILEDPYAVPPEDAFDLTNALEETPDTADEIILTFDKGIPVQIDGKTYELDD 237
Cdd:PRK13820 157 KEKGIPVPVGKEKPWSIDENLWSRSIEGGKLEDPAFEPPEEIYAWTVSPEDAPDEPEIVEIEFEEGVPVAINGEKMDGVE 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615 238 LILTLNALAGKHGIGRIDHVENRLVGIKSREIYEAPAAEVILKAHKALETITLTKDVAHFKPIIEKQFAEQLYNGLWFSP 317
Cdd:PRK13820 237 LIRKLNEIAGKHGVGRTDMMEDRVLGLKSRENYEHPAATVLLTAHKALEQLVLTREELKFKEIVDSKWAELAYEGLVDEP 316
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 613389615 318 LTDSLKLFIDSTQQYVSGDVRIKLFKGNAIVNGRKSPYTLYDEKLATYTKEDaFNQDAAVGFIDIYGL 385
Cdd:PRK13820 317 LREDLNAFIDKTQERVTGTVTVKLYKGSARVVGRESPYALYSEELVSFDSKT-IDQRDAEGMAKYHGL 383
PRK04527 PRK04527
argininosuccinate synthase; Provisional
1-395 8.34e-81

argininosuccinate synthase; Provisional


Pssm-ID: 235305  Cd Length: 400  Bit Score: 253.60  E-value: 8.34e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615   1 MKEKIVLAYSGGLDTSVAVQWLIDKGYDVVACCLDVG--EGKDLDIVYKKALDMGAVECHIIDATKEFSDEYVSYAIKGN 78
Cdd:PRK04527   1 SSKDIVLAFSGGLDTSFCIPYLQERGYAVHTVFADTGgvDAEERDFIEKRAAELGAASHVTVDGGPAIWEGFVKPLVWAG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615  79 LMYENAYPLVSAlSRPLIAKKLVEIAEKTNSVGIAHGCTGKGNDQVRFEVAIKALNpSLKAFAPVREWAWS----REEEI 154
Cdd:PRK04527  81 EGYQGQYPLLVS-DRYLIVDAALKRAEELGTRIIAHGCTGMGNDQVRFDLAVKALG-DYQIVAPIREIQKEhtqtRAYEQ 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615 155 DYAIKHNIPVSINHDSpYSIDQNLWGRANECGILeDPYAVPPEDAFDLTNALEETPDTADEIILTFDKGIPVQIDGKTYE 234
Cdd:PRK04527 159 KYLEERGFGVRAKQKA-YTINENLLGVTMSGGEI-DRWEAPGEGARGWCAPRSAWPTEALTVTIKFVEGEAVALDGKPLP 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615 235 LDDLILTLNALAGKHGIGRIDHVENRLVGIKSREIYEAPAAEVILKAHKALETITLTKDVAHFKPIIEKQFAEQLYNGLW 314
Cdd:PRK04527 237 GAQILAKLNKLFAQYGVGRGVYTGDTVIGLKGRIVFEAPGLVSLLTAHRALEDAVLTKQQNRFKPDVARKWVELVYEGFY 316
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615 315 FSPLTDSLKLFIDSTQQYVSGDVRIKLFKGNAIVNGRKSPYTLyDEKLATYTKEDAFNQDAAVGFIDIYGLPT----QVN 390
Cdd:PRK04527 317 HDPLKTDIEAFLKSSQAKVNGEVTLETRGGRVDAVAVRSPHLL-NSKGATYAQSADWGVEEAEGFIKLFGMSStlyaQVN 395

                 ....*
gi 613389615 391 AMLHG 395
Cdd:PRK04527 396 RSLRS 400
PRK05370 PRK05370
argininosuccinate synthase; Validated
3-370 1.35e-39

argininosuccinate synthase; Validated


Pssm-ID: 235434  Cd Length: 447  Bit Score: 146.66  E-value: 1.35e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615   3 EKIVLAYSGGLDTSVAVQWLIDKGYDVVACCLDVGE--GKDLDIVYKKALDMGAVECHIIDATKEFSDEYVSyAIK---- 76
Cdd:PRK05370  12 QRVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQpdEDDYDAIPRRAMEYGAENARLIDCRAQLVAEGIA-AIQcgaf 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615  77 ----GNLMYENAYPLVSALSRPLIAKklveiAEKTNSVGI-AHGCTGKGNDQVRFEVAIKALNPSLKAFAPvrewaW--- 148
Cdd:PRK05370  91 histGGVTYFNTTPLGRAVTGTMLVA-----AMKEDGVNIwGDGSTYKGNDIERFYRYGLLTNPELKIYKP-----Wldq 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615 149 -------SREEEIDYAIKHNIPVSINHDSPYSIDQNLWGRANECGILE---------DP-YAVPPEDafdltnalEETPD 211
Cdd:PRK05370 161 dfidelgGRAEMSEFLIAHGFDYKMSVEKAYSTDSNMLGATHEAKDLEhlnsgikivNPiMGVAFWD--------EDVEI 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615 212 TADEIILTFDKGIPVQIDGKTYELD-DLILTLNALAGKHGIGRIDHVENRLVGIKSREIYEAPAAEVILKAHKALETitl 290
Cdd:PRK05370 233 KAEEVTVRFEQGRPVALNGKTFSDPvELMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLVT--- 309
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615 291 tkdVAHFKPIIEKQFAEQ------LYNGLWFSP----LTDSLKLFIDSTqqyVSGDVRIKLFKGN--AIVNGRkSPYTLY 358
Cdd:PRK05370 310 ---GIHNEDTIEQYRINGrrlgrlLYQGRWFDPqalmLRESLQRWVASA---ITGEVTLELRRGNdySILNTV-SPNLTY 382
                        410
                 ....*....|...
gi 613389615 359 D-EKLATYTKEDA 370
Cdd:PRK05370 383 KpERLSMEKVESA 395
QueC COG0603
7-cyano-7-deazaguanine synthase (queuosine biosynthesis) [Translation, ribosomal structure and ...
1-61 2.62e-05

7-cyano-7-deazaguanine synthase (queuosine biosynthesis) [Translation, ribosomal structure and biogenesis]; 7-cyano-7-deazaguanine synthase (queuosine biosynthesis) is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440368 [Multi-domain]  Cd Length: 223  Bit Score: 45.15  E-value: 2.62e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 613389615   1 MKEKIVLAYSGGLDTSVAVQWLIDKGYDVVACCLDVG--EGKDLDIVYKKALDMGAVECHIID 61
Cdd:COG0603    1 MMKKAVVLLSGGLDSTTCLAWALARGYEVYALSFDYGqrHRKELEAARRIAKALGVGEHKVID 63
PRK14664 PRK14664
tRNA-specific 2-thiouridylase MnmA; Provisional
2-115 2.87e-04

tRNA-specific 2-thiouridylase MnmA; Provisional


Pssm-ID: 173127 [Multi-domain]  Cd Length: 362  Bit Score: 42.63  E-value: 2.87e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615   2 KEKIVLAYSGGLDTSVAVQWLIDKGYDVVACCLDVGeGKDLDIVYKKALDMGaVECHIIDATKEFSDEYVSYAIKGNLMY 81
Cdd:PRK14664   5 KKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW-GDEPQDARELAARMG-IEHYVADERVPFKDTIVKNFIDEYRQG 82
                         90       100       110
                 ....*....|....*....|....*....|....*
gi 613389615  82 ENAYPLVsaLSRPLIAKK-LVEIAEKTNSVGIAHG 115
Cdd:PRK14664  83 RTPNPCV--MCNPLFKFRmLIEWADKLGCAWIATG 115
MnmA_TRMU-like cd01998
MnmA/TRMU family 2-thiouridylases and similar proteins; This family is composed of bacterial ...
4-77 1.06e-03

MnmA/TRMU family 2-thiouridylases and similar proteins; This family is composed of bacterial tRNA-specific 2-thiouridylase MnmA (EC 2.8.1.13) and mitochondrial tRNA-specific 2-thiouridylase 1 (TRMU or MTU1, EC 2.8.1.14). MnmA catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. TRMU/MTU1 catalyzes the 2-thiolation of uridine at the wobble position (U34) of mitochondrial tRNA(Lys), tRNA(Glu) and tRNA(Gln); this is required for the formation of 5-taurinomethyl-2-thiouridine (tm5s2U) of mitochondrial tRNA(Lys), tRNA(Glu), and tRNA(Gln) at the wobble position. This family belongs to the adenine nucleotide alpha hydrolase (AANH) superfamily that also includes other N-type ATP PPases and ATP sulfurylases. It forms an alpha/beta/alpha fold which binds to the adenosine group.


Pssm-ID: 467502 [Multi-domain]  Cd Length: 349  Bit Score: 40.95  E-value: 1.06e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615   4 KIVLAYSGGLDTSVAVQWLIDKGYDVVA---------------CCldvgEGKDLDIVYKKALDMGaVECHIIDATKEFSD 68
Cdd:cd01998    1 KVAVAMSGGVDSSVAAALLKEQGYDVIGvfmknwddednekggCC----SEEDIEDARRVADQLG-IPLYVVDFSEEYWE 75

                 ....*....
gi 613389615  69 EYVSYAIKG 77
Cdd:cd01998   76 RVFDPFLEE 84
tRNA_Me_trans pfam03054
tRNA methyl transferase HUP domain; This family represents the N-terminal HUP domain in tRNA ...
3-83 1.37e-03

tRNA methyl transferase HUP domain; This family represents the N-terminal HUP domain in tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs.


Pssm-ID: 460787 [Multi-domain]  Cd Length: 202  Bit Score: 39.54  E-value: 1.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613389615    3 EKIVLAYSGGLDTSVAVQWLIDKGYDVVA-----------------CCldvgEGKDLDIVYKKALDMGaVECHIIDATKE 65
Cdd:pfam03054   1 MKVVVAMSGGVDSSVAAYLLKEQGHNVIGvfmknwdeeqsldeegkCC----SEEDLADAQRVCEQLG-IPLYVVNFEKE 75
                          90
                  ....*....|....*...
gi 613389615   66 FSDEYVSYAIKGnlmYEN 83
Cdd:pfam03054  76 YWEDVFEPFLDE---YKN 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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