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Conserved domains on  [gi|613388921|gb|EZZ92804|]
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hypothetical protein W395_01490 [Staphylococcus aureus VET0057R]

Protein Classification

CHAP domain-containing protein( domain architecture ID 11467641)

cysteine, histidine-dependent amidohydrolase/peptidase (CHAP) domain-containing protein may function as an amidase involved in the cleavage of peptidoglycans; similar to Staphylococcal secretory antigen SsaA

CATH:  3.90.1720.10
Gene Ontology:  GO:0042834|GO:0004040
PubMed:  12765834|12765833

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
COG3942 COG3942
Surface antigen [Cell wall/membrane/envelope biogenesis];
38-143 3.60e-44

Surface antigen [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 443142 [Multi-domain]  Cd Length: 129  Bit Score: 141.28  E-value: 3.60e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613388921  38 NYYSKNQCTWWAFKRRAQVGKPVSNRWGNAKNWYYNARKSKYATGRTPRKFAVMQST---AGYYGHVAVVEQVYKNGSIK 114
Cdd:COG3942   19 NGYPYGQCTWYAAWRRAQLGGPIGSGWGNANNWADNARAAGYTVGSTPKVGAVAVFTpgvAGPYGHVAVVESVNSDGSIL 98
                         90       100
                 ....*....|....*....|....*....
gi 613388921 115 VSEYNFYRPLKYNTRVLSKKAARNFNYIY 143
Cdd:COG3942   99 VSEMNWGGPGIYSTRTISAGNASSYGFIH 127
 
Name Accession Description Interval E-value
COG3942 COG3942
Surface antigen [Cell wall/membrane/envelope biogenesis];
38-143 3.60e-44

Surface antigen [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443142 [Multi-domain]  Cd Length: 129  Bit Score: 141.28  E-value: 3.60e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613388921  38 NYYSKNQCTWWAFKRRAQVGKPVSNRWGNAKNWYYNARKSKYATGRTPRKFAVMQST---AGYYGHVAVVEQVYKNGSIK 114
Cdd:COG3942   19 NGYPYGQCTWYAAWRRAQLGGPIGSGWGNANNWADNARAAGYTVGSTPKVGAVAVFTpgvAGPYGHVAVVESVNSDGSIL 98
                         90       100
                 ....*....|....*....|....*....
gi 613388921 115 VSEYNFYRPLKYNTRVLSKKAARNFNYIY 143
Cdd:COG3942   99 VSEMNWGGPGIYSTRTISAGNASSYGFIH 127
PRK08581 PRK08581
amidase domain-containing protein;
40-142 1.33e-19

amidase domain-containing protein;


Pssm-ID: 236304 [Multi-domain]  Cd Length: 619  Bit Score: 83.68  E-value: 1.33e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613388921  40 YSKNQCTWWAFKRRAQVGKPVSNRWGNAKNWYYNARKSKYATGRTPRKFAVMQSTAG------YYGHVAVVEQVYKNGSI 113
Cdd:PRK08581 508 YPHGQCTWYVYNRMKQFGTSISGDLGDAHNWNNRAQARGYQVSHTPKRHAAVVFEAGqagadqHYGHVAFVEKVNSDGSI 587
                         90       100       110
                 ....*....|....*....|....*....|...
gi 613388921 114 KVSEYNfyrpLKYNT----RVLSKKAARNFNYI 142
Cdd:PRK08581 588 VISESN----VKGLGiisyRTIDAAAAEELSYI 616
CHAP pfam05257
CHAP domain; This domain corresponds to an amidase function. Many of these proteins are ...
38-119 3.52e-17

CHAP domain; This domain corresponds to an amidase function. Many of these proteins are involved in cell wall metabolism of bacteria. This domain is found at the N-terminus of Swiss:P43675, where it functions as a glutathionylspermidine amidase EC:3.5.1.78. This domain is found to be the catalytic domain of PlyCA. CHAP is the amidase domain of bifunctional Escherichia coli glutathionylspermidine synthetase/amidase, and it catalyzes the hydrolysis of Gsp (glutathionylspermidine) into glutathione and spermidine.


Pssm-ID: 461605 [Multi-domain]  Cd Length: 83  Bit Score: 70.91  E-value: 3.52e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613388921   38 NYYSKNQCTWWAFKRRAQVGKpvsnRWGNAKNWYYNARKSKYATGRTPRKFAVMQSTAG----YYGHVAVVEQVYkNGSI 113
Cdd:pfam05257   3 NGYPWGQCTWFVYWRVAQLGI----YLGNAGDWADAAAGAYKVGSTTPKVGDIVVFDPGgggaSYGHVAIVEKVN-DGSI 77

                  ....*.
gi 613388921  114 KVSEYN 119
Cdd:pfam05257  78 TVSEQN 83
 
Name Accession Description Interval E-value
COG3942 COG3942
Surface antigen [Cell wall/membrane/envelope biogenesis];
38-143 3.60e-44

Surface antigen [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443142 [Multi-domain]  Cd Length: 129  Bit Score: 141.28  E-value: 3.60e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613388921  38 NYYSKNQCTWWAFKRRAQVGKPVSNRWGNAKNWYYNARKSKYATGRTPRKFAVMQST---AGYYGHVAVVEQVYKNGSIK 114
Cdd:COG3942   19 NGYPYGQCTWYAAWRRAQLGGPIGSGWGNANNWADNARAAGYTVGSTPKVGAVAVFTpgvAGPYGHVAVVESVNSDGSIL 98
                         90       100
                 ....*....|....*....|....*....
gi 613388921 115 VSEYNFYRPLKYNTRVLSKKAARNFNYIY 143
Cdd:COG3942   99 VSEMNWGGPGIYSTRTISAGNASSYGFIH 127
PRK08581 PRK08581
amidase domain-containing protein;
40-142 1.33e-19

amidase domain-containing protein;


Pssm-ID: 236304 [Multi-domain]  Cd Length: 619  Bit Score: 83.68  E-value: 1.33e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613388921  40 YSKNQCTWWAFKRRAQVGKPVSNRWGNAKNWYYNARKSKYATGRTPRKFAVMQSTAG------YYGHVAVVEQVYKNGSI 113
Cdd:PRK08581 508 YPHGQCTWYVYNRMKQFGTSISGDLGDAHNWNNRAQARGYQVSHTPKRHAAVVFEAGqagadqHYGHVAFVEKVNSDGSI 587
                         90       100       110
                 ....*....|....*....|....*....|...
gi 613388921 114 KVSEYNfyrpLKYNT----RVLSKKAARNFNYI 142
Cdd:PRK08581 588 VISESN----VKGLGiisyRTIDAAAAEELSYI 616
CHAP pfam05257
CHAP domain; This domain corresponds to an amidase function. Many of these proteins are ...
38-119 3.52e-17

CHAP domain; This domain corresponds to an amidase function. Many of these proteins are involved in cell wall metabolism of bacteria. This domain is found at the N-terminus of Swiss:P43675, where it functions as a glutathionylspermidine amidase EC:3.5.1.78. This domain is found to be the catalytic domain of PlyCA. CHAP is the amidase domain of bifunctional Escherichia coli glutathionylspermidine synthetase/amidase, and it catalyzes the hydrolysis of Gsp (glutathionylspermidine) into glutathione and spermidine.


Pssm-ID: 461605 [Multi-domain]  Cd Length: 83  Bit Score: 70.91  E-value: 3.52e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613388921   38 NYYSKNQCTWWAFKRRAQVGKpvsnRWGNAKNWYYNARKSKYATGRTPRKFAVMQSTAG----YYGHVAVVEQVYkNGSI 113
Cdd:pfam05257   3 NGYPWGQCTWFVYWRVAQLGI----YLGNAGDWADAAAGAYKVGSTTPKVGDIVVFDPGgggaSYGHVAIVEKVN-DGSI 77

                  ....*.
gi 613388921  114 KVSEYN 119
Cdd:pfam05257  78 TVSEQN 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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