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Conserved domains on  [gi|613362884|gb|EZZ67194|]
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hypothetical protein V164_02413 [Staphylococcus aureus USA7]

Protein Classification

6-phosphogluconolactonase( domain architecture ID 10001249)

6-phosphogluconolactonase catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, which is the the second step of the oxidative phase of the pentose phosphate pathway

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
NagB COG0363
6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport ...
2-187 3.23e-15

6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]; 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase is part of the Pathway/BioSystem: Pentose phosphate pathway


:

Pssm-ID: 440132 [Multi-domain]  Cd Length: 248  Bit Score: 71.35  E-value: 3.23e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613362884   2 AMNFKVFDNS----QLVAEYAADIIRKQFNNNPTtiagFHL-----DTdQAPVLDELKKNVEKHAVDFSQINI------- 65
Cdd:COG0363    1 KMRVIIFPDAeelaAAAAERAAERIAEAIAEKGR----AVLglaggST-PLGLYEELARLHKEGGLDWSRVHVfnldeyv 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613362884  66 -LDYDDKKSY--------FEALGVPAGQVYPIAYEKDAIELIADKIKTK-ENKGKLTLQVVSIDEQG------------- 122
Cdd:COG0363   76 gLPPDHPQSNrrfmrealLDHVDIPPENIHIPDGEAEDPEAAAARYEALiAEAGGIDLQLLGIGEDGhiafnfpgspfls 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613362884 123 ------KLNVSIRQG----------------------LMEAREIFLVVTGANKRDVVEKLYQENGKTSFePAD-LKAHRM 173
Cdd:COG0363  156 etdrvvTLDESTRQAnarffgsipkvppqaitlgiptIMKAREILLLATGENKAEAVAAALEGPVTEEV-PASiLQGHPN 234
                        250
                 ....*....|....
gi 613362884 174 VNVILDKEAAAGLP 187
Cdd:COG0363  235 VTWFLDEAAASLLT 248
 
Name Accession Description Interval E-value
NagB COG0363
6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport ...
2-187 3.23e-15

6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]; 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase is part of the Pathway/BioSystem: Pentose phosphate pathway


Pssm-ID: 440132 [Multi-domain]  Cd Length: 248  Bit Score: 71.35  E-value: 3.23e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613362884   2 AMNFKVFDNS----QLVAEYAADIIRKQFNNNPTtiagFHL-----DTdQAPVLDELKKNVEKHAVDFSQINI------- 65
Cdd:COG0363    1 KMRVIIFPDAeelaAAAAERAAERIAEAIAEKGR----AVLglaggST-PLGLYEELARLHKEGGLDWSRVHVfnldeyv 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613362884  66 -LDYDDKKSY--------FEALGVPAGQVYPIAYEKDAIELIADKIKTK-ENKGKLTLQVVSIDEQG------------- 122
Cdd:COG0363   76 gLPPDHPQSNrrfmrealLDHVDIPPENIHIPDGEAEDPEAAAARYEALiAEAGGIDLQLLGIGEDGhiafnfpgspfls 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613362884 123 ------KLNVSIRQG----------------------LMEAREIFLVVTGANKRDVVEKLYQENGKTSFePAD-LKAHRM 173
Cdd:COG0363  156 etdrvvTLDESTRQAnarffgsipkvppqaitlgiptIMKAREILLLATGENKAEAVAAALEGPVTEEV-PASiLQGHPN 234
                        250
                 ....*....|....
gi 613362884 174 VNVILDKEAAAGLP 187
Cdd:COG0363  235 VTWFLDEAAASLLT 248
nagB PRK00443
glucosamine-6-phosphate deaminase; Provisional
3-195 2.60e-10

glucosamine-6-phosphate deaminase; Provisional


Pssm-ID: 179028 [Multi-domain]  Cd Length: 261  Bit Score: 57.92  E-value: 2.60e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613362884   3 MNFKVFDNSQLVAEYAADIIRKQFNNN-----PTTIAGFHLDTDQAPVLDELKKNVEKHAVDFSQINI--------LDYD 69
Cdd:PRK00443   1 MRLIILKTAEEVGKWAARHIANRINAFlptkeRPFVLGLATGSSPLETYKALIELHKAGKVDFSRVTTfnldeyvgLPAD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613362884  70 DKKSY--------FEALGVPAGQVYPIayEKDAIELIA------DKIKtkeNKGKLTLQVVSIDEQGK------------ 123
Cdd:PRK00443  81 HPESYryfmrenfFDHVDIPPENINLL--NGNAPDPEAecrryeEKIK---SAGGIDLQILGIGENGHiafnepgssfas 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613362884 124 ------------------------------LNVSIRQgLMEAREIFLVVTGANKRDVVEKLYqENGKTSFEPAD-LKAHR 172
Cdd:PRK00443 156 rtriktltedtriansrffdgdieqvpkyaLTVGVGT-ILDAKEIMLLAPGHNKAEAVKAAV-EGPVNHMWPASiLQLHP 233
                        250       260
                 ....*....|....*....|...
gi 613362884 173 MVNVILDKEAAAGLPEDVKAYFT 195
Cdd:PRK00443 234 KATLVLDEAAASELKVKTVKYFT 256
GlcN6P_deaminase cd01399
GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase ...
12-186 4.05e-09

GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.


Pssm-ID: 238693 [Multi-domain]  Cd Length: 232  Bit Score: 54.41  E-value: 4.05e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613362884  12 QLVAEYAADIIRKQFNNNPTTIAGFHLDTDQAPVLDELKKNVEKHAVDFSQINI--LD-Y-----DDKKSY--------F 75
Cdd:cd01399    1 EEMSEAAAELIAELIREKPPAVLGLATGSTPLGVYEELIELHKEGGLSFSNVTTfnLDeYvglppDHPQSYhyfmrenlF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613362884  76 EALGVPAGQVY-PIAYEKDAIELIADKIKTKENKGKLTLQ------------------------VVSIDEQGKL-NVS-- 127
Cdd:cd01399   81 DHIDIKPENIHiPDGNAADLEAECRRYEALIAEAGGIDLQllgigenghigfnepgssldsrtrVVTLDESTRQaNARff 160
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 613362884 128 ----------IRQGL---MEAREIFLVVTGANKRDVVEKLYQEnGKTSFEPAD-LKAHRMVNVILDKEAAAGL 186
Cdd:cd01399  161 dgdedvptqaITMGIgtiMKAKEILLLATGEGKAEAVKKALEG-PVTEECPASiLQLHPNVTVILDEAAASEL 232
 
Name Accession Description Interval E-value
NagB COG0363
6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport ...
2-187 3.23e-15

6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]; 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase is part of the Pathway/BioSystem: Pentose phosphate pathway


Pssm-ID: 440132 [Multi-domain]  Cd Length: 248  Bit Score: 71.35  E-value: 3.23e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613362884   2 AMNFKVFDNS----QLVAEYAADIIRKQFNNNPTtiagFHL-----DTdQAPVLDELKKNVEKHAVDFSQINI------- 65
Cdd:COG0363    1 KMRVIIFPDAeelaAAAAERAAERIAEAIAEKGR----AVLglaggST-PLGLYEELARLHKEGGLDWSRVHVfnldeyv 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613362884  66 -LDYDDKKSY--------FEALGVPAGQVYPIAYEKDAIELIADKIKTK-ENKGKLTLQVVSIDEQG------------- 122
Cdd:COG0363   76 gLPPDHPQSNrrfmrealLDHVDIPPENIHIPDGEAEDPEAAAARYEALiAEAGGIDLQLLGIGEDGhiafnfpgspfls 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613362884 123 ------KLNVSIRQG----------------------LMEAREIFLVVTGANKRDVVEKLYQENGKTSFePAD-LKAHRM 173
Cdd:COG0363  156 etdrvvTLDESTRQAnarffgsipkvppqaitlgiptIMKAREILLLATGENKAEAVAAALEGPVTEEV-PASiLQGHPN 234
                        250
                 ....*....|....
gi 613362884 174 VNVILDKEAAAGLP 187
Cdd:COG0363  235 VTWFLDEAAASLLT 248
nagB PRK00443
glucosamine-6-phosphate deaminase; Provisional
3-195 2.60e-10

glucosamine-6-phosphate deaminase; Provisional


Pssm-ID: 179028 [Multi-domain]  Cd Length: 261  Bit Score: 57.92  E-value: 2.60e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613362884   3 MNFKVFDNSQLVAEYAADIIRKQFNNN-----PTTIAGFHLDTDQAPVLDELKKNVEKHAVDFSQINI--------LDYD 69
Cdd:PRK00443   1 MRLIILKTAEEVGKWAARHIANRINAFlptkeRPFVLGLATGSSPLETYKALIELHKAGKVDFSRVTTfnldeyvgLPAD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613362884  70 DKKSY--------FEALGVPAGQVYPIayEKDAIELIA------DKIKtkeNKGKLTLQVVSIDEQGK------------ 123
Cdd:PRK00443  81 HPESYryfmrenfFDHVDIPPENINLL--NGNAPDPEAecrryeEKIK---SAGGIDLQILGIGENGHiafnepgssfas 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613362884 124 ------------------------------LNVSIRQgLMEAREIFLVVTGANKRDVVEKLYqENGKTSFEPAD-LKAHR 172
Cdd:PRK00443 156 rtriktltedtriansrffdgdieqvpkyaLTVGVGT-ILDAKEIMLLAPGHNKAEAVKAAV-EGPVNHMWPASiLQLHP 233
                        250       260
                 ....*....|....*....|...
gi 613362884 173 MVNVILDKEAAAGLPEDVKAYFT 195
Cdd:PRK00443 234 KATLVLDEAAASELKVKTVKYFT 256
GlcN6P_deaminase cd01399
GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase ...
12-186 4.05e-09

GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.


Pssm-ID: 238693 [Multi-domain]  Cd Length: 232  Bit Score: 54.41  E-value: 4.05e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613362884  12 QLVAEYAADIIRKQFNNNPTTIAGFHLDTDQAPVLDELKKNVEKHAVDFSQINI--LD-Y-----DDKKSY--------F 75
Cdd:cd01399    1 EEMSEAAAELIAELIREKPPAVLGLATGSTPLGVYEELIELHKEGGLSFSNVTTfnLDeYvglppDHPQSYhyfmrenlF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613362884  76 EALGVPAGQVY-PIAYEKDAIELIADKIKTKENKGKLTLQ------------------------VVSIDEQGKL-NVS-- 127
Cdd:cd01399   81 DHIDIKPENIHiPDGNAADLEAECRRYEALIAEAGGIDLQllgigenghigfnepgssldsrtrVVTLDESTRQaNARff 160
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 613362884 128 ----------IRQGL---MEAREIFLVVTGANKRDVVEKLYQEnGKTSFEPAD-LKAHRMVNVILDKEAAAGL 186
Cdd:cd01399  161 dgdedvptqaITMGIgtiMKAKEILLLATGEGKAEAVKKALEG-PVTEECPASiLQLHPNVTVILDEAAASEL 232
PRK02122 PRK02122
glucosamine-6-phosphate deaminase-like protein; Validated
133-186 1.81e-03

glucosamine-6-phosphate deaminase-like protein; Validated


Pssm-ID: 235005 [Multi-domain]  Cd Length: 652  Bit Score: 38.47  E-value: 1.81e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 613362884 133 MEAREIFLVVTGANKRDVVEKLYQenGKTSFE-PAD-LKAHRMVNVILDKEAAAGL 186
Cdd:PRK02122 221 LKARRIVLLAWGEHKAPIIKRAVE--GEISDEvPASyLQEHPNATFVLDLAAASEL 274
PTZ00285 PTZ00285
glucosamine-6-phosphate isomerase; Provisional
124-193 2.42e-03

glucosamine-6-phosphate isomerase; Provisional


Pssm-ID: 140308  Cd Length: 253  Bit Score: 37.81  E-value: 2.42e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 613362884 124 LNVSIRQgLMEAREIFLVVTGANKRDVVEKLYqENGKTSFEPAD-LKAHRMVNVILDKEAAAGLpeDVKAY 193
Cdd:PTZ00285 186 LTVGIRT-IMEAREVLLLATGASKAIAVARCV-EGGVTHMCPASaLQMHPAAVLCLDEDATLEL--KVKTT 252
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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