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Conserved domains on  [gi|613307634|gb|EZZ12721|]
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hypothetical protein U935_02373 [Staphylococcus aureus Sau 46]

Protein Classification

tRNA1(Val) (adenine(37)-N6)-methyltransferase( domain architecture ID 11467886)

tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase is a class I SAM-dependent methyltransferase that specifically methylates the adenine in position 37 of tRNA(1)(Val)

CATH:  2.20.25.110
EC:  2.1.1.223
Gene Ontology:  GO:0016430|GO:1904047|GO:0008170|GO:0032259|GO:0008757
PubMed:  12826405|12504684
SCOP:  3000118

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TrmN6 COG4123
tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) ...
 6-241 2.63e-105

tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) A37 N6-methylase TrmN6 is part of the Pathway/BioSystem: tRNA modification


:

Pssm-ID: 443299 [Multi-domain]  Cd Length: 238  Bit Score: 303.99  E-value: 2.63e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307634   6 ERFDQLIKEDFSIIQNDDVFSFSTDALLLGYFTKPRTKDIVLDLCSGNGVIPLLLFAKHPR-HIEGVEIQKTLVDMARRT 84
Cdd:COG4123    1 ERLDGFLFKQFRIIQPRCGYRFGTDAVLLAAFAPVKKGGRVLDLGTGTGVIALMLAQRSPGaRITGVEIQPEAAELARRN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307634  85 FQFNDVDEYLTMHHMDLKNVTKVFKPSQYTLVTCNPPYFKENQQHQHQKEAHKIARHEIMCTLEDCMIAARHLLKEGGRL 164
Cdd:COG4123   81 VALNGLEDRITVIHGDLKEFAAELPPGSFDLVVSNPPYFKAGSGRKSPDEARAIARHEDALTLEDLIRAAARLLKPGGRF 160

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 613307634 165 NMVHRADRLMDVLFEMRKVNIEPKKVVFIYSKVGKSAQTIVVEGRKGGNQGLEIMPPFYIYNEDGNYSEEMKEVYYG 241
Cdd:COG4123  161 ALIHPAERLAEILAALRKYGLGPKRLRPVHPRPGKPAKRVLLEARKGGRAGLRILPPLVIHDEDGEYTPEVKALLRD 237
 
Name Accession Description Interval E-value
TrmN6 COG4123
tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) ...
 6-241 2.63e-105

tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) A37 N6-methylase TrmN6 is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 443299 [Multi-domain]  Cd Length: 238  Bit Score: 303.99  E-value: 2.63e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307634   6 ERFDQLIKEDFSIIQNDDVFSFSTDALLLGYFTKPRTKDIVLDLCSGNGVIPLLLFAKHPR-HIEGVEIQKTLVDMARRT 84
Cdd:COG4123    1 ERLDGFLFKQFRIIQPRCGYRFGTDAVLLAAFAPVKKGGRVLDLGTGTGVIALMLAQRSPGaRITGVEIQPEAAELARRN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307634  85 FQFNDVDEYLTMHHMDLKNVTKVFKPSQYTLVTCNPPYFKENQQHQHQKEAHKIARHEIMCTLEDCMIAARHLLKEGGRL 164
Cdd:COG4123   81 VALNGLEDRITVIHGDLKEFAAELPPGSFDLVVSNPPYFKAGSGRKSPDEARAIARHEDALTLEDLIRAAARLLKPGGRF 160

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 613307634 165 NMVHRADRLMDVLFEMRKVNIEPKKVVFIYSKVGKSAQTIVVEGRKGGNQGLEIMPPFYIYNEDGNYSEEMKEVYYG 241
Cdd:COG4123  161 ALIHPAERLAEILAALRKYGLGPKRLRPVHPRPGKPAKRVLLEARKGGRAGLRILPPLVIHDEDGEYTPEVKALLRD 237
MTS pfam05175
Methyltransferase small domain; This domain is found in ribosomal RNA small subunit ...
 31-167 1.81e-12

Methyltransferase small domain; This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases.


Pssm-ID: 428349 [Multi-domain]  Cd Length: 170  Bit Score: 63.38  E-value: 1.81e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307634   31 ALLLGYFTKPRTKDiVLDLCSGNGVIPLLLFAKHPR-HIEGVEIQKTLVDMARRTFQFNDVdEYLTMHHMDlknVTKVFK 109
Cdd:pfam05175  21 RLLLEHLPKDLSGK-VLDLGCGAGVLGAALAKESPDaELTMVDINARALESARENLAANGL-ENGEVVASD---VYSGVE 95

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 613307634  110 PSQYTLVTCNPPYfkenqqHQHQKEAHKIArHEIMCtledcmiAARHLLKEGGRLNMV 167
Cdd:pfam05175  96 DGKFDLIISNPPF------HAGLATTYNVA-QRFIA-------DAKRHLRPGGELWIV 139
PRK15001 PRK15001
23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG;
10-183 1.18e-05

23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG;


Pssm-ID: 184963 [Multi-domain]  Cd Length: 378  Bit Score: 45.79  E-value: 1.18e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307634  10 QLIKEDFSIIQNDDVFSFSTDALLLGYFTKPRTKDI---VLDLCSGNGVIPLLLFAKHPR-HIEGVEIQKTLVDMARRTF 85
Cdd:PRK15001 193 KLEGTDWTIHNHANVFSRTGLDIGARFFMQHLPENLegeIVDLGCGNGVIGLTLLDKNPQaKVVFVDESPMAVASSRLNV 272

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307634  86 QFNdVDEYLTMHHMDLKNVTKVFKPSQYTLVTCNPPYfkeNQQHQHQKE-AHKIARHeimctledcmiaARHLLKEGGRL 164
Cdd:PRK15001 273 ETN-MPEALDRCEFMINNALSGVEPFRFNAVLCNPPF---HQQHALTDNvAWEMFHH------------ARRCLKINGEL 336

                        170
                 ....*....|....*....
gi 613307634 165 NMVhrADRLMDVLFEMRKV 183
Cdd:PRK15001 337 YIV--ANRHLDYFHKLKKI 353
AdoMet_MTases cd02440
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ...
 46-164 8.27e-05

S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).


Pssm-ID: 100107 [Multi-domain]  Cd Length: 107  Bit Score: 40.88  E-value: 8.27e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307634  46 VLDLCSGNGVIPLLLFAKHPRHIEGVEIQKTLVDMARRtFQFNDVDEYLTMHHMDLKNVTKvFKPSQYTLVTCNPPYfke 125
Cdd:cd02440    2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARK-AAAALLADNVEVLKGDAEELPP-EADESFDVIISDPPL--- 76

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 613307634 126 nqQHQHQKEAHKIARheimctledcmiaARHLLKEGGRL 164
Cdd:cd02440   77 --HHLVEDLARFLEE-------------ARRLLKPGGVL 100
 
Name Accession Description Interval E-value
TrmN6 COG4123
tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) ...
 6-241 2.63e-105

tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) A37 N6-methylase TrmN6 is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 443299 [Multi-domain]  Cd Length: 238  Bit Score: 303.99  E-value: 2.63e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307634   6 ERFDQLIKEDFSIIQNDDVFSFSTDALLLGYFTKPRTKDIVLDLCSGNGVIPLLLFAKHPR-HIEGVEIQKTLVDMARRT 84
Cdd:COG4123    1 ERLDGFLFKQFRIIQPRCGYRFGTDAVLLAAFAPVKKGGRVLDLGTGTGVIALMLAQRSPGaRITGVEIQPEAAELARRN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307634  85 FQFNDVDEYLTMHHMDLKNVTKVFKPSQYTLVTCNPPYFKENQQHQHQKEAHKIARHEIMCTLEDCMIAARHLLKEGGRL 164
Cdd:COG4123   81 VALNGLEDRITVIHGDLKEFAAELPPGSFDLVVSNPPYFKAGSGRKSPDEARAIARHEDALTLEDLIRAAARLLKPGGRF 160

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 613307634 165 NMVHRADRLMDVLFEMRKVNIEPKKVVFIYSKVGKSAQTIVVEGRKGGNQGLEIMPPFYIYNEDGNYSEEMKEVYYG 241
Cdd:COG4123  161 ALIHPAERLAEILAALRKYGLGPKRLRPVHPRPGKPAKRVLLEARKGGRAGLRILPPLVIHDEDGEYTPEVKALLRD 237
RsmC COG2813
16S rRNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]; 16S rRNA ...
 24-167 3.12e-13

16S rRNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]; 16S rRNA G1207 methylase RsmC is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 442062 [Multi-domain]  Cd Length: 191  Bit Score: 65.98  E-value: 3.12e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307634  24 VFSFST-D---ALLLGYFTKPRTKDiVLDLCSGNGVIPLLLFAKHP-RHIEGVEIQKTLVDMARRTFQFNDVDEYLTMHH 98
Cdd:COG2813   28 VFSRDRlDigtRLLLEHLPEPLGGR-VLDLGCGYGVIGLALAKRNPeARVTLVDVNARAVELARANAAANGLENVEVLWS 106

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307634  99 mdlkNVTKVFKPSQYTLVTCNPPYfkenqqHQHQKEAHKIARHeimctledcMI-AARHLLKEGGRLNMV 167
Cdd:COG2813  107 ----DGLSGVPDGSFDLILSNPPF------HAGRAVDKEVAHA---------LIaDAARHLRPGGELWLV 157
MTS pfam05175
Methyltransferase small domain; This domain is found in ribosomal RNA small subunit ...
 31-167 1.81e-12

Methyltransferase small domain; This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases.


Pssm-ID: 428349 [Multi-domain]  Cd Length: 170  Bit Score: 63.38  E-value: 1.81e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307634   31 ALLLGYFTKPRTKDiVLDLCSGNGVIPLLLFAKHPR-HIEGVEIQKTLVDMARRTFQFNDVdEYLTMHHMDlknVTKVFK 109
Cdd:pfam05175  21 RLLLEHLPKDLSGK-VLDLGCGAGVLGAALAKESPDaELTMVDINARALESARENLAANGL-ENGEVVASD---VYSGVE 95

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 613307634  110 PSQYTLVTCNPPYfkenqqHQHQKEAHKIArHEIMCtledcmiAARHLLKEGGRLNMV 167
Cdd:pfam05175  96 DGKFDLIISNPPF------HAGLATTYNVA-QRFIA-------DAKRHLRPGGELWIV 139
HemK COG2890
Methylase of polypeptide chain release factors [Translation, ribosomal structure and ...
 46-164 2.82e-08

Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis];


Pssm-ID: 442135 [Multi-domain]  Cd Length: 282  Bit Score: 53.23  E-value: 2.82e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307634  46 VLDLCSGNGVIPLLLFAKHPR-HIEGVEIQKTLVDMARRTFQFNDVDEYLTMHHMDLknvtkvFKP----SQYTLVTCNP 120
Cdd:COG2890  116 VLDLGTGSGAIALALAKERPDaRVTAVDISPDALAVARRNAERLGLEDRVRFLQGDL------FEPlpgdGRFDLIVSNP 189

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 613307634 121 PYFKENQQHQHQKEAHKiarHEimctledCMIA-----------------ARHLLKEGGRL 164
Cdd:COG2890  190 PYIPEDEIALLPPEVRD---HE-------PRLAldggedgldfyrriiaqAPRLLKPGGWL 240
TrmA COG2265
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure ...
 37-121 1.88e-06

tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 441866 [Multi-domain]  Cd Length: 377  Bit Score: 47.86  E-value: 1.88e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307634  37 FTKPRTKDIVLDLCSGNGVIPLLLfAKHPRHIEGVEIQKTLVDMARRTFQFNDVDEyLTMHHMDLKNV-TKVFKPSQYTL 115
Cdd:COG2265  228 WLDLTGGERVLDLYCGVGTFALPL-ARRAKKVIGVEIVPEAVEDARENARLNGLKN-VEFVAGDLEEVlPELLWGGRPDV 305


                 ....*.
gi 613307634 116 VTCNPP 121
Cdd:COG2265  306 VVLDPP 311
Methyltransf_25 pfam13649
Methyltransferase domain; This family appears to be a methyltransferase domain.
 46-162 4.84e-06

Methyltransferase domain; This family appears to be a methyltransferase domain.


Pssm-ID: 463945 [Multi-domain]  Cd Length: 96  Bit Score: 43.71  E-value: 4.84e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307634   46 VLDLCSGNGVIPLLLFAKHPRHIEGVEIQKTLVDMARRTFQFNDVDeyLTMHHMDLKNVTkvFKPSQYTLVTCNPPYfke 125
Cdd:pfam13649   1 VLDLGCGTGRLTLALARRGGARVTGVDLSPEMLERARERAAEAGLN--VEFVQGDAEDLP--FPDGSFDLVVSSGVL--- 73

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 613307634  126 nqQHQHQKEAHKIARHeimctledcmiaARHLLKEGG 162
Cdd:pfam13649  74 --HHLPDPDLEAALRE------------IARVLKPGG 96
PRK15001 PRK15001
23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG;
10-183 1.18e-05

23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG;


Pssm-ID: 184963 [Multi-domain]  Cd Length: 378  Bit Score: 45.79  E-value: 1.18e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307634  10 QLIKEDFSIIQNDDVFSFSTDALLLGYFTKPRTKDI---VLDLCSGNGVIPLLLFAKHPR-HIEGVEIQKTLVDMARRTF 85
Cdd:PRK15001 193 KLEGTDWTIHNHANVFSRTGLDIGARFFMQHLPENLegeIVDLGCGNGVIGLTLLDKNPQaKVVFVDESPMAVASSRLNV 272

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307634  86 QFNdVDEYLTMHHMDLKNVTKVFKPSQYTLVTCNPPYfkeNQQHQHQKE-AHKIARHeimctledcmiaARHLLKEGGRL 164
Cdd:PRK15001 273 ETN-MPEALDRCEFMINNALSGVEPFRFNAVLCNPPF---HQQHALTDNvAWEMFHH------------ARRCLKINGEL 336

                        170
                 ....*....|....*....
gi 613307634 165 NMVhrADRLMDVLFEMRKV 183
Cdd:PRK15001 337 YIV--ANRHLDYFHKLKKI 353
COG4976 COG4976
Predicted methyltransferase, contains TPR repeat [General function prediction only];
46-164 6.68e-05

Predicted methyltransferase, contains TPR repeat [General function prediction only];


Pssm-ID: 444001 [Multi-domain]  Cd Length: 181  Bit Score: 42.29  E-value: 6.68e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307634  46 VLDLCSGNGVIpLLLFAKHPRHIEGVEIQKTLVDMARRTFQfndvdeYLTMHHMDLKNVTkvFKPSQYTLVTCN--PPYF 123
Cdd:COG4976   50 VLDLGCGTGLL-GEALRPRGYRLTGVDLSEEMLAKAREKGV------YDRLLVADLADLA--EPDGRFDLIVAAdvLTYL 120

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 613307634 124 KEnqqhqhqkeahkiarheimctLEDCMIAARHLLKEGGRL 164
Cdd:COG4976  121 GD---------------------LAAVFAGVARALKPGGLF 140
AdoMet_MTases cd02440
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ...
 46-164 8.27e-05

S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).


Pssm-ID: 100107 [Multi-domain]  Cd Length: 107  Bit Score: 40.88  E-value: 8.27e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307634  46 VLDLCSGNGVIPLLLFAKHPRHIEGVEIQKTLVDMARRtFQFNDVDEYLTMHHMDLKNVTKvFKPSQYTLVTCNPPYfke 125
Cdd:cd02440    2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARK-AAAALLADNVEVLKGDAEELPP-EADESFDVIISDPPL--- 76

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 613307634 126 nqQHQHQKEAHKIARheimctledcmiaARHLLKEGGRL 164
Cdd:cd02440   77 --HHLVEDLARFLEE-------------ARRLLKPGGVL 100
UbiE COG2226
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ...
 39-164 1.38e-03

Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis


Pssm-ID: 441828 [Multi-domain]  Cd Length: 143  Bit Score: 38.05  E-value: 1.38e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307634  39 KPRTKDIVLDLCSGNGVIpLLLFAKHPRHIEGVEIQKTLVDMARRTFQFNDVDeyLTMHHMDLKNVTkvFKPSQYTLVTC 118
Cdd:COG2226   19 GLRPGARVLDLGCGTGRL-ALALAERGARVTGVDISPEMLELARERAAEAGLN--VEFVVGDAEDLP--FPDGSFDLVIS 93

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 613307634 119 NppyfkenqqhqhqkeahkiarhEIMCTLEDCMIAARHL---LKEGGRL 164
Cdd:COG2226   94 S----------------------FVLHHLPDPERALAEIarvLKPGGRL 120
COG4076 COG4076
Predicted RNA methylase [General function prediction only];
41-164 2.54e-03

Predicted RNA methylase [General function prediction only];


Pssm-ID: 443253 [Multi-domain]  Cd Length: 230  Bit Score: 38.09  E-value: 2.54e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307634  41 RTKDIVLDLCSGNGVIPLLLFAKHPRHIEGVEIQKTLVDMARRTFQFNDVDEYLTMHHmdlKNVTKVFKPSQYTLVTCnp 120
Cdd:COG4076   34 KPGDVVLDIGTGSGLLSMLAARAGAKKVYAVEVNPDIAAVARRIIAANGLSDRITVIN---ADATDLDLPEKADVIIS-- 108

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 613307634 121 pyfkenqqhqhqkeahkiarhEIM--CTLEDCMI-----AARHLLKEGGRL 164
Cdd:COG4076  109 ---------------------EMLdtALLDEGQVpilnhARKRLLKPGGRI 138
UbiG COG2227
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and ...
 30-119 8.45e-03

2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and metabolism]; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 441829 [Multi-domain]  Cd Length: 126  Bit Score: 35.38  E-value: 8.45e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307634  30 DALLLGYFTKPRTkdiVLDLCSGNGVIpLLLFAKHPRHIEGVEIQKTLVDMARRTFQFNDVDeyltMHHMDLKNVTkvFK 109
Cdd:COG2227   15 AALLARLLPAGGR---VLDVGCGTGRL-ALALARRGADVTGVDISPEALEIARERAAELNVD----FVQGDLEDLP--LE 84

                         90
                 ....*....|
gi 613307634 110 PSQYTLVTCN 119
Cdd:COG2227   85 DGSFDLVICS 94
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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