|
Name |
Accession |
Description |
Interval |
E-value |
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
7-450 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 680.41 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 7 WEKVLEIAQEKLSAVSYSTFLKDTELYTIKDGEAIVLSSIPFNANWLNQQYAEIIQAILFDVVGYEVKPHFITTEelaNY 86
Cdd:TIGR00362 1 WNRILERLEKELSEQEYNTWFKPLKLLSIEGNTLIISVPNEFVKEWIEKNYLDLIEELLQELFGAEIEIEFTVGE---DE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 87 SNNETATSKETTKPSTETTEDNHvlgREQFNAHNTFDTFVIGPGNRFPHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLM 166
Cdd:TIGR00362 78 EELEPNSKKPEPAPPEAPAPPSS---ASGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 167 HAIGHHVLDNNPDAKVIYTSSEKFTNEFIKSIRDNEGEAFRERYRNIDVLLIDDIQFIQNKVQTQEEFFYTFNELHQNNK 246
Cdd:TIGR00362 155 HAIGNEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENNK 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 247 QIVISSDRPPKEIAQLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEEKLDIPPEALNYIANQIQSNIRELEGALTR 326
Cdd:TIGR00362 235 QIVLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNITSNVRELEGALNR 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 327 LLAYSQLLGKPITTELTAEALKDIIqAPKSKKITIQDIQKIVGQYYNVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFS 406
Cdd:TIGR00362 315 LLAYASLTGKPITLELAKEALKDLL-RAQKKEITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELTDLS 393
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 613307386 407 LPKIGEEFGGRDHTTVIHAHEKISKDLKEDPIFKQEVENLEKEI 450
Cdd:TIGR00362 394 LPEIGKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
2-452 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 673.77 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 2 SEKEIWEKVLEIAQEKLSAVSYSTFLKDTELYTIKDGEAIVLSSIPFNANWLNQQYAEIIQAILfdvvgyevkphfitte 81
Cdd:PRK00149 1 NLQSLWEKVLERLKDELSEQEYETWIKPLKALSLEDNTLTLYVPNRFVKDWIEKNYLDLIEEAL---------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 82 elanysnnetatskettkpstettednhvlgreQFNAHNTFDTFVIGPGNRFPHAASLAVAEAPAKAYNPLFIYGGVGLG 161
Cdd:PRK00149 65 ---------------------------------QLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLG 111
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 162 KTHLMHAIGHHVLDNNPDAKVIYTSSEKFTNEFIKSIRDNEGEAFRERYRNIDVLLIDDIQFIQNKVQTQEEFFYTFNEL 241
Cdd:PRK00149 112 KTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNAL 191
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 242 HQNNKQIVISSDRPPKEIAQLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEEKLDIPPEALNYIANQIQSNIRELE 321
Cdd:PRK00149 192 HEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELE 271
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 322 GALTRLLAYSQLLGKPITTELTAEALKDIIqAPKSKKITIQDIQKIVGQYYNVRIEDFSAKKRTKSIAYPRQIAMYLSRE 401
Cdd:PRK00149 272 GALNRLIAYASLTGKPITLELAKEALKDLL-AAQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKE 350
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 613307386 402 LTDFSLPKIGEEFGGRDHTTVIHAHEKISKDLKEDPIFKQEVENLEKEIRN 452
Cdd:PRK00149 351 LTDLSLPEIGRAFGGRDHTTVLHAVRKIEKLLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
116-419 |
0e+00 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 551.72 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 116 FNAHNTFDTFVIGPGNRFPHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHHVLDNNPDAKVIYTSSEKFTNEFI 195
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 196 KSIRDNEGEAFRERYRNIDVLLIDDIQFIQNKVQTQEEFFYTFNELHQNNKQIVISSDRPPKEIAQLEDRLRSRFEWGLI 275
Cdd:COG0593 81 NAIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 276 VDITPPDYETRMAILQKKIEEEKLDIPPEALNYIANQIQSNIRELEGALTRLLAYSQLLGKPITTELTAEALKDIIQApK 355
Cdd:COG0593 161 VDIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLRA-Q 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 613307386 356 SKKITIQDIQKIVGQYYNVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFGGRDH 419
Cdd:COG0593 240 KKEITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
117-333 |
6.33e-131 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 377.05 E-value: 6.33e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 117 NAHNTFDTFVIGPGNRFPHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHHVLDNNPDAKVIYTSSEKFTNEFIK 196
Cdd:pfam00308 2 NPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFVD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 197 SIRDNEGEAFRERYRNIDVLLIDDIQFIQNKVQTQEEFFYTFNELHQNNKQIVISSDRPPKEIAQLEDRLRSRFEWGLIV 276
Cdd:pfam00308 82 AIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLVT 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 613307386 277 DITPPDYETRMAILQKKIEEEKLDIPPEALNYIANQIQSNIRELEGALTRLLAYSQL 333
Cdd:pfam00308 162 DIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSL 218
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
361-450 |
2.61e-41 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 141.88 E-value: 2.61e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 361 IQDIQKIVGQYYNVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFGGRDHTTVIHAHEKISKDLKEDPIFK 440
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 613307386 441 QEVENLEKEI 450
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
360-428 |
3.02e-34 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 122.62 E-value: 3.02e-34
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 613307386 360 TIQDIQKIVGQYYNVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFGGRDHTTVIHAHEK 428
Cdd:smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
7-450 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 680.41 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 7 WEKVLEIAQEKLSAVSYSTFLKDTELYTIKDGEAIVLSSIPFNANWLNQQYAEIIQAILFDVVGYEVKPHFITTEelaNY 86
Cdd:TIGR00362 1 WNRILERLEKELSEQEYNTWFKPLKLLSIEGNTLIISVPNEFVKEWIEKNYLDLIEELLQELFGAEIEIEFTVGE---DE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 87 SNNETATSKETTKPSTETTEDNHvlgREQFNAHNTFDTFVIGPGNRFPHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLM 166
Cdd:TIGR00362 78 EELEPNSKKPEPAPPEAPAPPSS---ASGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 167 HAIGHHVLDNNPDAKVIYTSSEKFTNEFIKSIRDNEGEAFRERYRNIDVLLIDDIQFIQNKVQTQEEFFYTFNELHQNNK 246
Cdd:TIGR00362 155 HAIGNEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENNK 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 247 QIVISSDRPPKEIAQLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEEKLDIPPEALNYIANQIQSNIRELEGALTR 326
Cdd:TIGR00362 235 QIVLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNITSNVRELEGALNR 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 327 LLAYSQLLGKPITTELTAEALKDIIqAPKSKKITIQDIQKIVGQYYNVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFS 406
Cdd:TIGR00362 315 LLAYASLTGKPITLELAKEALKDLL-RAQKKEITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELTDLS 393
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 613307386 407 LPKIGEEFGGRDHTTVIHAHEKISKDLKEDPIFKQEVENLEKEI 450
Cdd:TIGR00362 394 LPEIGKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
2-452 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 673.77 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 2 SEKEIWEKVLEIAQEKLSAVSYSTFLKDTELYTIKDGEAIVLSSIPFNANWLNQQYAEIIQAILfdvvgyevkphfitte 81
Cdd:PRK00149 1 NLQSLWEKVLERLKDELSEQEYETWIKPLKALSLEDNTLTLYVPNRFVKDWIEKNYLDLIEEAL---------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 82 elanysnnetatskettkpstettednhvlgreQFNAHNTFDTFVIGPGNRFPHAASLAVAEAPAKAYNPLFIYGGVGLG 161
Cdd:PRK00149 65 ---------------------------------QLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLG 111
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 162 KTHLMHAIGHHVLDNNPDAKVIYTSSEKFTNEFIKSIRDNEGEAFRERYRNIDVLLIDDIQFIQNKVQTQEEFFYTFNEL 241
Cdd:PRK00149 112 KTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNAL 191
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 242 HQNNKQIVISSDRPPKEIAQLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEEKLDIPPEALNYIANQIQSNIRELE 321
Cdd:PRK00149 192 HEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELE 271
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 322 GALTRLLAYSQLLGKPITTELTAEALKDIIqAPKSKKITIQDIQKIVGQYYNVRIEDFSAKKRTKSIAYPRQIAMYLSRE 401
Cdd:PRK00149 272 GALNRLIAYASLTGKPITLELAKEALKDLL-AAQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKE 350
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 613307386 402 LTDFSLPKIGEEFGGRDHTTVIHAHEKISKDLKEDPIFKQEVENLEKEIRN 452
Cdd:PRK00149 351 LTDLSLPEIGRAFGGRDHTTVLHAVRKIEKLLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
116-419 |
0e+00 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 551.72 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 116 FNAHNTFDTFVIGPGNRFPHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHHVLDNNPDAKVIYTSSEKFTNEFI 195
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 196 KSIRDNEGEAFRERYRNIDVLLIDDIQFIQNKVQTQEEFFYTFNELHQNNKQIVISSDRPPKEIAQLEDRLRSRFEWGLI 275
Cdd:COG0593 81 NAIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 276 VDITPPDYETRMAILQKKIEEEKLDIPPEALNYIANQIQSNIRELEGALTRLLAYSQLLGKPITTELTAEALKDIIQApK 355
Cdd:COG0593 161 VDIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLRA-Q 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 613307386 356 SKKITIQDIQKIVGQYYNVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFGGRDH 419
Cdd:COG0593 240 KKEITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
115-452 |
2.58e-164 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 476.63 E-value: 2.58e-164
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 115 QFNAHNTFDTFVIGPGNRFPHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHHVLDNNPDAKVIYTSSEKFTNEF 194
Cdd:PRK14086 280 RLNPKYTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 195 IKSIRDNEGEAFRERYRNIDVLLIDDIQFIQNKVQTQEEFFYTFNELHQNNKQIVISSDRPPKEIAQLEDRLRSRFEWGL 274
Cdd:PRK14086 360 INSIRDGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGL 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 275 IVDITPPDYETRMAILQKKIEEEKLDIPPEALNYIANQIQSNIRELEGALTRLLAYSQLLGKPITTELTAEALKDIIQAP 354
Cdd:PRK14086 440 ITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDLIPED 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 355 KSKKITIQDIQKIVGQYYNVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFgGRDHTTVIHAHEKISKDLK 434
Cdd:PRK14086 520 SAPEITAAAIMAATADYFGLTVEDLCGTSRSRVLVTARQIAMYLCRELTDLSLPKIGQQF-GRDHTTVMHADRKIRALMA 598
|
330
....*....|....*...
gi 613307386 435 EDPIFKQEVENLEKEIRN 452
Cdd:PRK14086 599 ERRSIYNQVTELTNRIKN 616
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
117-333 |
6.33e-131 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 377.05 E-value: 6.33e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 117 NAHNTFDTFVIGPGNRFPHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHHVLDNNPDAKVIYTSSEKFTNEFIK 196
Cdd:pfam00308 2 NPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFVD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 197 SIRDNEGEAFRERYRNIDVLLIDDIQFIQNKVQTQEEFFYTFNELHQNNKQIVISSDRPPKEIAQLEDRLRSRFEWGLIV 276
Cdd:pfam00308 82 AIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLVT 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 613307386 277 DITPPDYETRMAILQKKIEEEKLDIPPEALNYIANQIQSNIRELEGALTRLLAYSQL 333
Cdd:pfam00308 162 DIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSL 218
|
|
| PRK12422 |
PRK12422 |
chromosomal replication initiator protein DnaA; |
48-436 |
4.92e-80 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 183521 [Multi-domain] Cd Length: 445 Bit Score: 254.76 E-value: 4.92e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 48 FNANWLNQQYAEIIQAILFDVVGYEVKPHfITTEELANYSNNETATSKETTKPSTETTEDnhvlgreqFNAHNTFDTFVI 127
Cdd:PRK12422 45 FQVTWFEEHIRHKVKASLVNNNGKPIRVH-VTSLDKSTPFKKEKQIQQEKTAYFTMKYGE--------LDPLMTFANFLV 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 128 GPGNRFPHAASLAVAEAPAKA----YNPLFIYGGVGLGKTHLMHAIGHHVldNNPDAKVIYTSSEKFTNEFIKSIRDNEG 203
Cdd:PRK12422 116 TPENDLPHRILQEFTKVSEQGkgfpFNPIYLFGPEGSGKTHLMQAAVHAL--RESGGKILYVRSELFTEHLVSAIRSGEM 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 204 EAFRERYRNIDVLLIDDIQFIQNKVQTQEEFFYTFNELHQNNKQIVISSDRPPKEIAQLEDRLRSRFEWGLIVDITPPDY 283
Cdd:PRK12422 194 QRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTK 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 284 ETRMAILQKKIEEEKLDIPPEALNYIANQIQSNIRELEGALTRL---LAYSQLLGKPITTELTAEALKDIIQAPKSKKIT 360
Cdd:PRK12422 274 EGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLakrVAYKKLSHQLLYVDDIKALLHDVLEAAESVRLT 353
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 613307386 361 IQDIQKIVGQYYNVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFgGRDHTTVIHAHEKISKDLKED 436
Cdd:PRK12422 354 PSKIIRAVAQYYGVSPESILGRSQSREYVLPRQVAMYLCRQKLSLSYVKIGDVF-SRDHSTVISSIRAISQKLEED 428
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
361-450 |
2.61e-41 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 141.88 E-value: 2.61e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 361 IQDIQKIVGQYYNVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFGGRDHTTVIHAHEKISKDLKEDPIFK 440
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 613307386 441 QEVENLEKEI 450
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
pfam08299 |
Bacterial dnaA protein helix-turn-helix; |
361-429 |
2.86e-36 |
|
Bacterial dnaA protein helix-turn-helix;
Pssm-ID: 462419 [Multi-domain] Cd Length: 69 Bit Score: 127.90 E-value: 2.86e-36
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 613307386 361 IQDIQKIVGQYYNVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFGGRDHTTVIHAHEKI 429
Cdd:pfam08299 1 IEKIIEAVAEYFGISPEDLKSKSRKREIALARQIAMYLARELTDLSLPEIGRAFGGRDHSTVIHACKKI 69
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
360-428 |
3.02e-34 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 122.62 E-value: 3.02e-34
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 613307386 360 TIQDIQKIVGQYYNVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFGGRDHTTVIHAHEK 428
Cdd:smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| DnaA_homol_Hda |
TIGR03420 |
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). ... |
121-348 |
2.87e-29 |
|
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274571 [Multi-domain] Cd Length: 226 Bit Score: 114.21 E-value: 2.87e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 121 TFDTFvIGPGNrfphAASLAVAEAPAKAYNPLFIY--GGVGLGKTHLMHAIGHHVLDNnpDAKVIYTSSekftNEFIKsi 198
Cdd:TIGR03420 13 TFDNF-YAGGN----AELLAALRQLAAGKGDRFLYlwGESGSGKSHLLQAACAAAEER--GKSAIYLPL----AELAQ-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 199 RDNEGEAFRERYrniDVLLIDDIQFIQNKVQTQEEFFYTFNELHQNNKQIVISSDRPPKEIA-QLEDrLRSRFEWGLIVD 277
Cdd:TIGR03420 80 ADPEVLEGLEQA---DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPlRLPD-LRTRLAWGLVFQ 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 613307386 278 ITPPDYETRMAILQKKIEEEKLDIPPEALNYIANQIQSNIRELEGALTRLLAYSQLLGKPITTELTAEALK 348
Cdd:TIGR03420 156 LPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFVKEVLA 226
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
144-274 |
1.65e-17 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 79.11 E-value: 1.65e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 144 APAKAYNPLFIYGGVGLGKTHLMHAIGHHVldNNPDAKVIYTSSEKFTNEFIKSIRDN----EGEAFRERYRNIDVLLID 219
Cdd:cd00009 14 LELPPPKNLLLYGPPGTGKTTLARAIANEL--FRPGAPFLYLNASDLLEGLVVAELFGhflvRLLFELAEKAKPGVLFID 91
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 220 DIQFIQNKVQ-TQEEFFYTFNEL---HQNNKQIVISSDRPP-KEIAQLEDRLRSRFEWGL 274
Cdd:cd00009 92 EIDSLSRGAQnALLRVLETLNDLridRENVRVIGATNRPLLgDLDRALYDRLDIRIVIPL 151
|
|
| PRK08903 |
PRK08903 |
DnaA regulatory inactivator Hda; Validated |
121-355 |
3.75e-17 |
|
DnaA regulatory inactivator Hda; Validated
Pssm-ID: 236347 [Multi-domain] Cd Length: 227 Bit Score: 80.41 E-value: 3.75e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 121 TFDTFVIGPGNRFPHAASLAVAE-APAKAYnplFIYGGVGLGKTHLMHAIGHHVLDNNPDAkvIYtssekftnefiksIR 199
Cdd:PRK08903 16 TFDNFVAGENAELVARLRELAAGpVADRFF---YLWGEAGSGRSHLLQALVADASYGGRNA--RY-------------LD 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 200 DNEGEAFRERYRNIDVLLIDDIQFIQNKVQTQeeFFYTFNELHQNNK-QIVISSDRPPKEIAQLEDrLRSRFEWGLIVDI 278
Cdd:PRK08903 78 AASPLLAFDFDPEAELYAVDDVERLDDAQQIA--LFNLFNRVRAHGQgALLVAGPAAPLALPLRED-LRTRLGWGLVYEL 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 613307386 279 TPPDYETRMAILQKKIEEEKLDIPPEALNYIANQIQSNIRELEGALTRLLAYSQLLGKPITTELtaeaLKDIIQAPK 355
Cdd:PRK08903 155 KPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPVTLPL----LREMLAQPE 227
|
|
| PRK06835 |
PRK06835 |
DNA replication protein DnaC; Validated |
152-269 |
8.27e-13 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 235871 [Multi-domain] Cd Length: 329 Bit Score: 69.16 E-value: 8.27e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 152 LFIYGGVGLGKTHLMHAIGHHVLDNNpdAKVIYTSSEKFTNEfIKSIR---DNEGEAFRERYRNIDVLLIDDIQFIQNKV 228
Cdd:PRK06835 186 LLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTADELIEI-LREIRfnnDKELEEVYDLLINCDLLIIDDLGTEKITE 262
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 613307386 229 QTQEEFFYTFNELHQNNKQIVISSDRPPKEIAQL-EDRLRSR 269
Cdd:PRK06835 263 FSKSELFNLINKRLLRQKKMIISTNLSLEELLKTySERISSR 304
|
|
| PRK08084 |
PRK08084 |
DnaA inactivator Hda; |
121-327 |
2.49e-12 |
|
DnaA inactivator Hda;
Pssm-ID: 181224 [Multi-domain] Cd Length: 235 Bit Score: 66.24 E-value: 2.49e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 121 TFDTFVIGpGNRFPHAASLAVAEAPAKAYnpLFIYGGVGLGKTHLMHAIGHHVldNNPDAKVIYTSSEK---FTNEFIks 197
Cdd:PRK08084 20 TFASFYPG-DNDSLLAALQNALRQEHSGY--IYLWSREGAGRSHLLHAACAEL--SQRGRAVGYVPLDKrawFVPEVL-- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 198 irdnegeafrERYRNIDVLLIDDIQFIQNKVQTQEEFFYTFNE-LHQNNKQIVISSDRPPKEIA-QLEDrLRSRFEWGLI 275
Cdd:PRK08084 93 ----------EGMEQLSLVCIDNIECIAGDELWEMAIFDLYNRiLESGRTRLLITGDRPPRQLNlGLPD-LASRLDWGQI 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 613307386 276 VDITPPDYETRMAILQKKIEEEKLDIPPEALNYIANQIQSNIRELEGALTRL 327
Cdd:PRK08084 162 YKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQL 213
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
116-258 |
5.20e-11 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 62.49 E-value: 5.20e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 116 FNAHNTFDTFVIG--PGNRFPHAASLAVAEAPAKAYNpLFIYGGVGLGKTHLMHAIGHHVLDNNPdaKVIYTSSEKFTNE 193
Cdd:COG1484 65 FPAAKTLEDFDFDaqPGLDRRQILELATLDFIERGEN-LILLGPPGTGKTHLAIALGHEACRAGY--RVRFTTAPDLVNE 141
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 613307386 194 FIKSIRDNEGEAFRERYRNIDVLLIDDIQFIQNKVQTQEEFFYTFNELHQnNKQIVISSDRPPKE 258
Cdd:COG1484 142 LKEARADGRLERLLKRLAKVDLLILDELGYLPLDAEGAELLFELISDRYE-RRSTIITSNLPFSE 205
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
150-275 |
4.05e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 55.07 E-value: 4.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 150 NPLFIYGGVGLGKTHLMHAIGHHVLDNNpdAKVIYTSSEKFTNEFIKSIRDNE----------GEAFRE-----RYRNID 214
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLLLIIvggkkasgsgELRLRLalalaRKLKPD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 613307386 215 VLLIDDIQFIQNKVQTQEEFFY-----TFNELHQNNKQIVISSDRPPKEI-AQLEDRLRSRFEWGLI 275
Cdd:smart00382 81 VLILDEITSLLDAEQEALLLLLeelrlLLLLKSEKNLTVILTTNDEKDLGpALLRRRFDRRIVLLLI 147
|
|
| PRK06030 |
PRK06030 |
hypothetical protein; Provisional |
380-451 |
5.61e-09 |
|
hypothetical protein; Provisional
Pssm-ID: 180356 Cd Length: 124 Bit Score: 54.01 E-value: 5.61e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 613307386 380 SAKKRTKSIAYPRQIAMYLSRelTDFSLPKIGEEFG-GRDHTTVIHAHEKIsKDLKEDPIFKQEVENLEKEIR 451
Cdd:PRK06030 45 SPLRGRREVSRIRQIAMYVAH--VSLGWPMNEVALAfGRDRTTVGHACHTV-EDLRDDAAFDARVSVLERIVN 114
|
|
| PRK08116 |
PRK08116 |
hypothetical protein; Validated |
121-307 |
2.15e-08 |
|
hypothetical protein; Validated
Pssm-ID: 236153 [Multi-domain] Cd Length: 268 Bit Score: 55.03 E-value: 2.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 121 TFDTFVIGPGNRfphaASLAVAEAPAKAYN-------PLFIYGGVGLGKTHLMHAIGHHVLDNnpDAKVIYTSSEKFTNE 193
Cdd:PRK08116 83 TFENFLFDKGSE----KAYKIARKYVKKFEemkkenvGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVNFPQLLNR 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 194 fIKSIRDNEGEAFRERY----RNIDVLLIDDIQFIQNKVQTQEEFFYTFNELHQNNKQIVISSDRPPKEIA-QLEDRLRS 268
Cdd:PRK08116 157 -IKSTYKSSGKEDENEIirslVNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELKnQYGKRIYD 235
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 613307386 269 R-FEWGLIVDITPPDYetrmailQKKIEEEKLDIPPEALN 307
Cdd:PRK08116 236 RiLEMCTPVENEGKSY-------RKEIAKEKLQRLKELLK 268
|
|
| DnaA_N |
pfam11638 |
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a ... |
5-65 |
8.43e-08 |
|
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a protein involved in the initiation of bacterial chromosomal replication. The structure of this domain is known. It is also found in three copies in some proteins. The exact function of this domain is uncertain but it has been suggested to play a role in oligomerization.
Pssm-ID: 463316 [Multi-domain] Cd Length: 65 Bit Score: 48.82 E-value: 8.43e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 613307386 5 EIWEKVLEIAQEKLSAVSYSTFLKDTELYTIKDGEAIVLsSIP--FNANWLNQQYAEIIQAIL 65
Cdd:pfam11638 2 ELWERVLERLRKEVGEQTFNTWIKPLTLVDLDDGGSLTL-SVPnrFVRDWVEEHYLDRILELW 63
|
|
| HolA |
COG1466 |
DNA polymerase III, delta subunit [Replication, recombination and repair]; |
215-369 |
2.68e-07 |
|
DNA polymerase III, delta subunit [Replication, recombination and repair];
Pssm-ID: 441075 [Multi-domain] Cd Length: 305 Bit Score: 52.18 E-value: 2.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 215 VLLIDDIQFIQNKVQTQEEFFYTFNELHQNNkQIVISSDRPPKeiaqledrlRSRF-----EWGLIVDITPPDYETRMAI 289
Cdd:COG1466 65 LVIVRNAEFLKKPGEGLEALEAYLANPPPDT-VLVLTAGKLDK---------RKKLfkaleKAGVVVECYPLKERELPAW 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 290 LQKKIEEEKLDIPPEALNYIANQIQSNIRELEGALTRLLAYsqllgkpitteltaealkdiiqAPKSKKITIQDIQKIVG 369
Cdd:COG1466 135 IRQRLKAAGLRIDPDAAQLLAERVGGDLLALAQELEKLALY----------------------AGDGGTITLEDVEALVG 192
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
152-350 |
7.42e-05 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 44.59 E-value: 7.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 152 LFIYGGVGLGKTHLMHAIGHHVLDNNPDAKVIYTSSEKFTNE-------------FI-------KSIRDNEGEAFRE--R 209
Cdd:PRK12402 39 LLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQgkkylvedprfahFLgtdkrirSSKIDNFKHVLKEyaS 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 210 YRNID----VLLIDDIQFIQNKVQ-----TQEEffytfnelHQNNKQIVISSDRPPKEIAQLedrlRSRfewGLIVDITP 280
Cdd:PRK12402 119 YRPLSadykTILLDNAEALREDAQqalrrIMEQ--------YSRTCRFIIATRQPSKLIPPI----RSR---CLPLFFRA 183
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 281 PDYETRMAILQKKIEEEKLDIPPEALNYIANQIQSNIRelEGALTRLLAYSQllGKPITTELTAEALKDI 350
Cdd:PRK12402 184 PTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLR--KAILTLQTAALA--AGEITMEAAYEALGDV 249
|
|
| PRK06921 |
PRK06921 |
hypothetical protein; Provisional |
150-269 |
1.55e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 180750 [Multi-domain] Cd Length: 266 Bit Score: 43.23 E-value: 1.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 150 NPLFIYGGVGLGKTHLMHAIGHHVLDNNPDAKVIYTSSEKFTNefIKSIRDNEgEAFRERYRNIDVLLIDDIQFIQNKVQ 229
Cdd:PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD--LKDDFDLL-EAKLNRMKKVEVLFIDDLFKPVNGKP 194
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 613307386 230 TQEEF-----FYTFNELHQNNKQIVISSDRPPKEIAQLEDRLRSR 269
Cdd:PRK06921 195 RATEWqieqmYSVLNYRYLNHKPILISSELTIDELLDIDEALGSR 239
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
152-270 |
1.81e-04 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 43.68 E-value: 1.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 152 LFIYGGVGLGKT----HLMHAIGHHVLDNNPDAKVIY------TSSEKFTNEFIKSIRDNE---------GEAFRERYRN 212
Cdd:COG1474 54 VLIYGPTGTGKTavakYVLEELEEEAEERGVDVRVVYvncrqaSTRYRVLSRILEELGSGEdipstglstDELFDRLYEA 133
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 613307386 213 ID------VLLIDDIQFIQNKvqTQEEFFYTFNELHQNNKQ-----IVISSDrpPKEIAQLEDRLRSRF 270
Cdd:COG1474 134 LDerdgvlVVVLDEIDYLVDD--EGDDLLYQLLRANEELEGarvgvIGISND--LEFLENLDPRVKSSL 198
|
|
| PRK09087 |
PRK09087 |
hypothetical protein; Validated |
212-353 |
2.77e-03 |
|
hypothetical protein; Validated
Pssm-ID: 169652 [Multi-domain] Cd Length: 226 Bit Score: 39.27 E-value: 2.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 212 NIDVLLIDDiqfiqnkvqtqEEFFYTFNELHQNNKQIVISSDRPPKEI-AQLEDrLRSRFEWGLIVDITPPDYETRMAIL 290
Cdd:PRK09087 95 DIDAGGFDE-----------TGLFHLINSVRQAGTSLLMTSRLWPSSWnVKLPD-LKSRLKAATVVEIGEPDDALLSQVI 162
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 613307386 291 QKKIEEEKLDIPPEALNYIANQIQsniRELEGALT---RL--LAYSQllGKPITTELTAEALKDIIQA 353
Cdd:PRK09087 163 FKLFADRQLYVDPHVVYYLVSRME---RSLFAAQTivdRLdrLALER--KSRITRALAAEVLNEMGQA 225
|
|
| PRK06620 |
PRK06620 |
hypothetical protein; Validated |
194-348 |
4.72e-03 |
|
hypothetical protein; Validated
Pssm-ID: 168630 Cd Length: 214 Bit Score: 38.29 E-value: 4.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 194 FIKSIRDNEgeafrERYRNIDVLLIDDIQFIQNKvqtqeEFFYTFNELHQNNKQIVISSDRPPKEIAqLEDrLRSRFEWG 273
Cdd:PRK06620 72 IIKDIFFNE-----EILEKYNAFIIEDIENWQEP-----ALLHIFNIINEKQKYLLLTSSDKSRNFT-LPD-LSSRIKSV 139
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 613307386 274 LIVDITPPDYETRMAILQKKIEEEKLDIPPEALNYIANQIQSNIRELEGALTRLLAYSQLLGKPITTELTAEALK 348
Cdd:PRK06620 140 LSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLVKEVLN 214
|
|
| PRK08939 |
PRK08939 |
primosomal protein DnaI; Reviewed |
146-221 |
5.25e-03 |
|
primosomal protein DnaI; Reviewed
Pssm-ID: 236353 [Multi-domain] Cd Length: 306 Bit Score: 38.70 E-value: 5.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307386 146 AKAYNP------LFIYGGVGLGKTHLMHAIGHHVLDNNPDAKVIYTSSekFTNEFIKSIRDNEGEAFRERYRNIDVLLID 219
Cdd:PRK08939 147 LEAYPPgekvkgLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPE--FIRELKNSISDGSVKEKIDAVKEAPVLMLD 224
|
..
gi 613307386 220 DI 221
Cdd:PRK08939 225 DI 226
|
|
| |
