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Conserved domains on  [gi|613307373|gb|EZZ12465|]
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hypothetical protein U935_02456 [Staphylococcus aureus Sau 46]

Protein Classification

response regulator transcription factor( domain architecture ID 11433066)

OmpR family response regulator transcription factor with a signal receiver (REC) domain and a helix-turn-helix (HTH) DNA-binding domain that may be part of a two-component regulatory system

CATH:  3.40.50.2300
Gene Ontology:  GO:0006355|GO:0003677|GO:0000160|GO:0000156
PubMed:  11226872|10966457|31100988
SCOP:  4003632

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OmpR COG0745
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain ...
 2-217 9.58e-64

DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain [Signal transduction mechanisms, Transcription];


:

Pssm-ID: 440508 [Multi-domain]  Cd Length: 204  Bit Score: 197.10  E-value: 9.58e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   2 QSKILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHT-DIPIIVIS 80
Cdd:COG0745    1 MPRILVVEDDPDIRELLADALEREGYEVDTAADGEEALELLEEERPDLILLDLMLPGMDGLEVCRRLRARPsDIPIIMLT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  81 ARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERIAKSHqetnfVFTNGLLsIDFGSKSVVINNQEVHLTPNEFSL 160
Cdd:COG0745   81 ARDDEEDRVRGLEAGADDYLTKPFDPEELLARIRALLRRRAAE-----VLRVGDL-LDLAAREVTRDGEPVELTPKEFRL 154

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 613307373 161 LELLSNHKGKVLTYEMILKRIYGYVNKTEMpSLRVHMTSLRQKLsqchedAKDIIKT 217
Cdd:COG0745  155 LELLMRNPGRVVSREQLLEEVWGYDYGDDR-TVDVHISRLRKKL------EDDLIET 204
 
Name Accession Description Interval E-value
OmpR COG0745
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain ...
 2-217 9.58e-64

DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain [Signal transduction mechanisms, Transcription];


Pssm-ID: 440508 [Multi-domain]  Cd Length: 204  Bit Score: 197.10  E-value: 9.58e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   2 QSKILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHT-DIPIIVIS 80
Cdd:COG0745    1 MPRILVVEDDPDIRELLADALEREGYEVDTAADGEEALELLEEERPDLILLDLMLPGMDGLEVCRRLRARPsDIPIIMLT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  81 ARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERIAKSHqetnfVFTNGLLsIDFGSKSVVINNQEVHLTPNEFSL 160
Cdd:COG0745   81 ARDDEEDRVRGLEAGADDYLTKPFDPEELLARIRALLRRRAAE-----VLRVGDL-LDLAAREVTRDGEPVELTPKEFRL 154

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 613307373 161 LELLSNHKGKVLTYEMILKRIYGYVNKTEMpSLRVHMTSLRQKLsqchedAKDIIKT 217
Cdd:COG0745  155 LELLMRNPGRVVSREQLLEEVWGYDYGDDR-TVDVHISRLRKKL------EDDLIET 204
PRK10529 PRK10529
DNA-binding transcriptional activator KdpE; Provisional
 2-226 2.29e-55

DNA-binding transcriptional activator KdpE; Provisional


Pssm-ID: 182522 [Multi-domain]  Cd Length: 225  Bit Score: 176.53  E-value: 2.29e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   2 QSKILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIVISA 81
Cdd:PRK10529   1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAIPVIVLSA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  82 RQEEQTIIQALDNGANDYMTKPFNVDELRARIRV-IERIAKSHQETNFV-FTNglLSIDFGSKSVVINNQEVHLTPNEFS 159
Cdd:PRK10529  81 RSEESDKIAALDAGADDYLSKPFGIGELQARLRVaLRRHSATPAPDPLVkFSD--VTVDLAARVIHRGEEEVHLTPIEFR 158

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 613307373 160 LLELLSNHKGKVLTYEMILKRIYG--YVNKTEMpsLRVHMTSLRQKLSQCHEDAKDIIkTHPRIGYQML 226
Cdd:PRK10529 159 LLAVLLNNAGKVLTQRQLLNQVWGpnAVEHSHY--LRIYMGHLRQKLEQDPARPRHFI-TETGIGYRFM 224
PhoB TIGR02154
phosphate regulon transcriptional regulatory protein PhoB; PhoB is a DNA-binding response ...
 1-223 4.58e-47

phosphate regulon transcriptional regulatory protein PhoB; PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well. [Regulatory functions, DNA interactions, Signal transduction, Two-component systems]


Pssm-ID: 131209 [Multi-domain]  Cd Length: 226  Bit Score: 155.18  E-value: 4.58e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373    1 MQSKILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHT---DIPII 77
Cdd:TIGR02154   1 MTRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERGPDLILLDWMLPGTSGIELCRRLRRRPetrAIPII 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   78 VISARQEEQTIIQALDNGANDYMTKPFNVDELRARIR-VIERIAKSHQETnfVFTNGLLSIDFGSKSVVINNQEVHLTPN 156
Cdd:TIGR02154  81 MLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKaVLRRIRPQLSDE--VIEVGDLSLDPVAHRVFRGGQPLSLGPT 158

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  157 EFSLLELLSNHKGKVLTYEMILKRIYG---YVnktEMPSLRVHMTSLRQKLsqCHEDAKDIIKTHPRIGY 223
Cdd:TIGR02154 159 EFRLLHFFMTHPERVYSREQLLDRVWGrdvYV---EERTVDVHIRRLRKAL--NPFGLEDPVQTVRGAGY 223
REC_OmpR_KdpE-like cd17620
phosphoacceptor receiver (REC) domain of KdpE-like OmpR family response regulators; KdpE is a ...
 5-103 7.39e-39

phosphoacceptor receiver (REC) domain of KdpE-like OmpR family response regulators; KdpE is a component of the KdpD/KdpE two-component system (TCS) and is activated when histidine kinase KdpD senses a drop in external K+ concentration or upshift in ionic osmolarity, resulting in the expression of a heterooligomeric transporter KdpFABC. In addition, the KdpD/KdpE TCS is also an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. KdpE is a member of the OmpR family of DNA-binding response regulators that contain REC and winged helix-turn-helix (wHTH) DNA-binding output effector domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381135 [Multi-domain]  Cd Length: 99  Bit Score: 129.98  E-value: 7.39e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIVISARQE 84
Cdd:cd17620    1 ILVIEDEPQIRRFLRTALEAHGYRVFEAETGQEGLLEAATRKPDLIILDLGLPDMDGLEVIRRLREWSAVPVIVLSARDE 80

                         90
                 ....*....|....*....
gi 613307373  85 EQTIIQALDNGANDYMTKP 103
Cdd:cd17620   81 ESDKIAALDAGADDYLTKP 99
resp_reg_YycF NF040534
response regulator YycF;
4-204 4.76e-33

response regulator YycF;


Pssm-ID: 439744 [Multi-domain]  Cd Length: 231  Bit Score: 119.06  E-value: 4.76e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIVISARQ 83
Cdd:NF040534   2 KILVVDDEKPIADILEFNLKKEGYEVFCAYDGNEALELVEEEVPDLVLLDIMLPGRDGMEVCREVRKKYDMPIIMLTAKD 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  84 EEQTIIQALDNGANDYMTKPFNVDELRARIRVIER-----IAKSHQETNFVFTNGLLSIDFGSKSVVINNQEVHLTPNEF 158
Cdd:NF040534  82 SEIDKVLGLELGADDYVTKPFSTRELIARVKANLRrhqqqNTEEEEEENNEIVIGSLTIHPDAYTVKKRGETIELTHREF 161

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 613307373 159 SLLELLSNHKGKVLTYEMILKRIYGYVNKTEMPSLRVHMTSLRQKL 204
Cdd:NF040534 162 ELLHYLAKHIGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKI 207
Response_reg pfam00072
Response regulator receiver domain; This domain receives the signal from the sensor partner in ...
 5-114 1.22e-30

Response regulator receiver domain; This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.


Pssm-ID: 395025 [Multi-domain]  Cd Length: 111  Bit Score: 109.16  E-value: 1.22e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373    5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHT-DIPIIVISARQ 83
Cdd:pfam00072   1 VLIVDDDPLIRELLRQLLEKEGYVVAEADDGKEALELLKEERPDLILLDINMPGMDGLELLKRIRRRDpTTPVIILTAHG 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 613307373   84 EEQTIIQALDNGANDYMTKPFNVDELRARIR 114
Cdd:pfam00072  81 DEDDAVEALEAGADDFLSKPFDPDELLAAIR 111
Trans_reg_C smart00862
Transcriptional regulatory protein, C terminal; This domain is almost always found associated ...
 148-225 3.92e-20

Transcriptional regulatory protein, C terminal; This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.


Pssm-ID: 214866 [Multi-domain]  Cd Length: 76  Bit Score: 81.06  E-value: 3.92e-20
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 613307373   148 NQEVHLTPNEFSLLELLSNHKGKVLTYEMILKRIYGYVNKTEMPSLRVHMTSLRQKLSQchEDAKDIIKTHPRIGYQM 225
Cdd:smart00862   1 GEPIKLTPKEFRLLELLLRNPGRVVSREELLEAVWGDDEDVDDNTLDVHISRLRKKLED--DGDPRLIETVRGVGYRL 76
 
Name Accession Description Interval E-value
OmpR COG0745
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain ...
 2-217 9.58e-64

DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain [Signal transduction mechanisms, Transcription];


Pssm-ID: 440508 [Multi-domain]  Cd Length: 204  Bit Score: 197.10  E-value: 9.58e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   2 QSKILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHT-DIPIIVIS 80
Cdd:COG0745    1 MPRILVVEDDPDIRELLADALEREGYEVDTAADGEEALELLEEERPDLILLDLMLPGMDGLEVCRRLRARPsDIPIIMLT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  81 ARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERIAKSHqetnfVFTNGLLsIDFGSKSVVINNQEVHLTPNEFSL 160
Cdd:COG0745   81 ARDDEEDRVRGLEAGADDYLTKPFDPEELLARIRALLRRRAAE-----VLRVGDL-LDLAAREVTRDGEPVELTPKEFRL 154

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 613307373 161 LELLSNHKGKVLTYEMILKRIYGYVNKTEMpSLRVHMTSLRQKLsqchedAKDIIKT 217
Cdd:COG0745  155 LELLMRNPGRVVSREQLLEEVWGYDYGDDR-TVDVHISRLRKKL------EDDLIET 204
PRK10529 PRK10529
DNA-binding transcriptional activator KdpE; Provisional
 2-226 2.29e-55

DNA-binding transcriptional activator KdpE; Provisional


Pssm-ID: 182522 [Multi-domain]  Cd Length: 225  Bit Score: 176.53  E-value: 2.29e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   2 QSKILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIVISA 81
Cdd:PRK10529   1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAIPVIVLSA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  82 RQEEQTIIQALDNGANDYMTKPFNVDELRARIRV-IERIAKSHQETNFV-FTNglLSIDFGSKSVVINNQEVHLTPNEFS 159
Cdd:PRK10529  81 RSEESDKIAALDAGADDYLSKPFGIGELQARLRVaLRRHSATPAPDPLVkFSD--VTVDLAARVIHRGEEEVHLTPIEFR 158

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 613307373 160 LLELLSNHKGKVLTYEMILKRIYG--YVNKTEMpsLRVHMTSLRQKLSQCHEDAKDIIkTHPRIGYQML 226
Cdd:PRK10529 159 LLAVLLNNAGKVLTQRQLLNQVWGpnAVEHSHY--LRIYMGHLRQKLEQDPARPRHFI-TETGIGYRFM 224
PhoB TIGR02154
phosphate regulon transcriptional regulatory protein PhoB; PhoB is a DNA-binding response ...
 1-223 4.58e-47

phosphate regulon transcriptional regulatory protein PhoB; PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well. [Regulatory functions, DNA interactions, Signal transduction, Two-component systems]


Pssm-ID: 131209 [Multi-domain]  Cd Length: 226  Bit Score: 155.18  E-value: 4.58e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373    1 MQSKILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHT---DIPII 77
Cdd:TIGR02154   1 MTRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERGPDLILLDWMLPGTSGIELCRRLRRRPetrAIPII 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   78 VISARQEEQTIIQALDNGANDYMTKPFNVDELRARIR-VIERIAKSHQETnfVFTNGLLSIDFGSKSVVINNQEVHLTPN 156
Cdd:TIGR02154  81 MLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKaVLRRIRPQLSDE--VIEVGDLSLDPVAHRVFRGGQPLSLGPT 158

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  157 EFSLLELLSNHKGKVLTYEMILKRIYG---YVnktEMPSLRVHMTSLRQKLsqCHEDAKDIIKTHPRIGY 223
Cdd:TIGR02154 159 EFRLLHFFMTHPERVYSREQLLDRVWGrdvYV---EERTVDVHIRRLRKAL--NPFGLEDPVQTVRGAGY 223
orf27 CHL00148
Ycf27; Reviewed
 2-223 1.99e-45

Ycf27; Reviewed


Pssm-ID: 214376 [Multi-domain]  Cd Length: 240  Bit Score: 151.41  E-value: 1.99e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   2 QSKILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIVISA 81
Cdd:CHL00148   6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKEQPDLVILDVMMPKLDGYGVCQEIRKESDVPIIMLTA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  82 RQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIER-----IAKSHQETNFVFTNGLLSIDFGSKSVVINNQEVHLTPN 156
Cdd:CHL00148  86 LGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRrtnkkSFSSKIPNSSIIRIGFLKIDLNKKQVYKNNERIRLTGM 165

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 613307373 157 EFSLLELLSNHKGKVLTYEMILKRIYGYVNKTEMPS--LRVHMTSLRQKLsqchED---AKDIIKTHPRIGY 223
Cdd:CHL00148 166 EFSLLELLISKSGEIFSRATILKEVWGYTPERHIDTrvVDVHISRLRAKL----EDdpsNPDLILTARGTGY 233
PRK10643 PRK10643
two-component system response regulator PmrA;
4-231 1.00e-44

two-component system response regulator PmrA;


Pssm-ID: 182612 [Multi-domain]  Cd Length: 222  Bit Score: 149.03  E-value: 1.00e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIR-QHTDIPIIVISAR 82
Cdd:PRK10643   2 KILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESGHYSLVVLDLGLPDEDGLHLLRRWRqKKYTLPVLILTAR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  83 QEEQTIIQALDNGANDYMTKPFNVDELRARIRVIerIAKSHQETNFVFTNGLLSIDFGSKSVVINNQEVHLTPNEFSLLE 162
Cdd:PRK10643  82 DTLEDRVAGLDVGADDYLVKPFALEELHARIRAL--IRRHQGQGENELQVGNLTLNLGRQQVWLDGQELILTPKEFALLS 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 613307373 163 LLSNHKGKVLTYEMILKRIYGYVNKTEMPSLRVHMTSLRQKLsqchedAKDIIKTHPRIGYqMLQWKEK 231
Cdd:PRK10643 160 RLMLKAGSPVHREILYQDIYNWDDEPSSNTLEVHIHNLRDKV------GKDRIRTVRGFGY-MLVANEE 221
REC_OmpR_KdpE-like cd17620
phosphoacceptor receiver (REC) domain of KdpE-like OmpR family response regulators; KdpE is a ...
 5-103 7.39e-39

phosphoacceptor receiver (REC) domain of KdpE-like OmpR family response regulators; KdpE is a component of the KdpD/KdpE two-component system (TCS) and is activated when histidine kinase KdpD senses a drop in external K+ concentration or upshift in ionic osmolarity, resulting in the expression of a heterooligomeric transporter KdpFABC. In addition, the KdpD/KdpE TCS is also an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. KdpE is a member of the OmpR family of DNA-binding response regulators that contain REC and winged helix-turn-helix (wHTH) DNA-binding output effector domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381135 [Multi-domain]  Cd Length: 99  Bit Score: 129.98  E-value: 7.39e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIVISARQE 84
Cdd:cd17620    1 ILVIEDEPQIRRFLRTALEAHGYRVFEAETGQEGLLEAATRKPDLIILDLGLPDMDGLEVIRRLREWSAVPVIVLSARDE 80

                         90
                 ....*....|....*....
gi 613307373  85 EQTIIQALDNGANDYMTKP 103
Cdd:cd17620   81 ESDKIAALDAGADDYLTKP 99
PRK10955 PRK10955
envelope stress response regulator transcription factor CpxR;
4-226 6.02e-35

envelope stress response regulator transcription factor CpxR;


Pssm-ID: 182864 [Multi-domain]  Cd Length: 232  Bit Score: 124.14  E-value: 6.02e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALTLDYYNVTTADNATQAhFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIVISARQ 83
Cdd:PRK10955   3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQA-LDLLDDSIDLLLLDVMMPKKNGIDTLKELRQTHQTPVIMLTARG 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  84 EEQTIIQALDNGANDYMTKPFNVDELRARIRVIERIAK-SHQETNFVFTNGLLSIDF-----GSKSVVINNQEVHLTPNE 157
Cdd:PRK10955  82 SELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHwSEQQQNNDNGSPTLEVDAlslnpGRQEASFDGQTLELTGTE 161

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 613307373 158 FSLLELLSNHKGKVLTYEMILKRIYGyvnKTEMP---SLRVHMTSLRQKLSQcHEDAKDIIKTHPRIGYQML 226
Cdd:PRK10955 162 FTLLYLLAQHLGQVVSREHLSQEVLG---KRLTPfdrAIDMHISNLRRKLPD-RKDGHPWFKTLRGRGYLMV 229
PleD COG3706
Two-component response regulator, PleD family, consists of two REC domains and a diguanylate ...
 4-119 4.75e-34

Two-component response regulator, PleD family, consists of two REC domains and a diguanylate cyclase (GGDEF) domain [Signal transduction mechanisms, Transcription];


Pssm-ID: 442920 [Multi-domain]  Cd Length: 179  Bit Score: 120.40  E-value: 4.75e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHT---DIPIIVIS 80
Cdd:COG3706    3 RILVVDDDPTNRKLLRRLLEAAGYEVVEAADGEEALELLQEHRPDLILLDLEMPDMDGLELCRRLRADPrtaDIPIIFLT 82

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 613307373  81 ARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERI 119
Cdd:COG3706   83 ALDDEEDRARALEAGADDYLTKPFDPEELLARVDLVARY 121
PRK11083 PRK11083
DNA-binding response regulator CreB; Provisional
 1-223 8.02e-34

DNA-binding response regulator CreB; Provisional


Pssm-ID: 236838 [Multi-domain]  Cd Length: 228  Bit Score: 121.22  E-value: 8.02e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   1 MQSKILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIR-QHTDIPIIVI 79
Cdd:PRK11083   2 QQPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQPPDLVILDVGLPDISGFELCRQLLaFHPALPVIFL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  80 SARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERIAKSHQETNFVFTNGLLSIDFGSKSVVINNQEVHLTPNEFS 159
Cdd:PRK11083  82 TARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRVKKFAAPSPVIRIGHFELDEPAARISYFGTPLTLTRYEFL 161

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 613307373 160 LLELLSNHKGKVLTYEMILKRIYGYVNKTEMPSLRVHMTSLRQKLSQCHEDAkDIIKTHPRIGY 223
Cdd:PRK11083 162 LLKTLLLSPGRVFSRQQLMDIVWEDAQDSYDRTVDTHIKTLRAKLRAINPDL-SPINTHRGMGY 224
REC_OmpR_PmrA-like cd17624
phosphoacceptor receiver (REC) domain of PmrA-like OmpR family response regulators; This ...
 5-118 1.71e-33

phosphoacceptor receiver (REC) domain of PmrA-like OmpR family response regulators; This subfamily contains various OmpR family response regulators including PmrA, BasR, QseB, tctD, and RssB, which are components of two-component regulatory systems (TCSs). The PmrA/PmrB TCS controls transcription of genes that are involved in lipopolysaccharide modification in the outer membrane of bacteria, increasing bacterial resistance to host-derived antimicrobial peptides. The BasS/BasR TCS functions as an iron- and zinc-sensing transcription regulator. The QseB/QseC TCS activates the flagella regulon by activating transcription of FlhDC. The RssA/RssB TCS regulates swarming behavior in Serratia marcescens. OmpR family DNA-binding response regulators contain N-terminal receiver (REC) and C-terminal DNA-binding winged helix-turn-helix effector domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381139 [Multi-domain]  Cd Length: 115  Bit Score: 116.82  E-value: 1.71e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIR-QHTDIPIIVISARQ 83
Cdd:cd17624    1 ILLVEDDALLGDGLKTGLRKAGYAVDWVRTGAEAEAALASGPYDLVILDLGLPDGDGLDLLRRWRrQGQSLPVLILTARD 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 613307373  84 EEQTIIQALDNGANDYMTKPFNVDELRARIRVIER 118
Cdd:cd17624   81 GVDDRVAGLDAGADDYLVKPFALEELLARLRALLR 115
PRK10816 PRK10816
two-component system response regulator PhoP;
4-224 2.25e-33

two-component system response regulator PhoP;


Pssm-ID: 182755 [Multi-domain]  Cd Length: 223  Bit Score: 119.84  E-value: 2.25e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQH-TDIPIIVISAR 82
Cdd:PRK10816   2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSNdVSLPILVLTAR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  83 QEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERiaKSHQETNFVFTNGLLSIDFGSKSVVINNQEVHLTPNEFSLLE 162
Cdd:PRK10816  82 ESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR--RNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIME 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 613307373 163 LLSNHKGKVLTYEMILKRIYGYVNKTEMPSLRVHMTSLRQKLSQCHEDakDIIKTHPRIGYQ 224
Cdd:PRK10816 160 TLIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQ--EVITTVRGQGYR 219
PRK10710 PRK10710
DNA-binding transcriptional regulator BaeR; Provisional
 1-223 3.53e-33

DNA-binding transcriptional regulator BaeR; Provisional


Pssm-ID: 182665 [Multi-domain]  Cd Length: 240  Bit Score: 119.79  E-value: 3.53e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   1 MQSKILIIEDDHAITHLLdvaltLDY-----YNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIP 75
Cdd:PRK10710   9 NTPRILIVEDEPKLGQLL-----IDYlqaasYATTLLSHGDEVLPYVRQTPPDLILLDLMLPGTDGLTLCREIRRFSDIP 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  76 IIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERIAKSHQETNFVFTNGLLSIDFGSKSVVINNQEVHLTP 155
Cdd:PRK10710  84 IVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQRELQQQDAESPLIIDESRFQASWRGKMLDLTP 163

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 613307373 156 NEFSLLELLSNHKGKVLTYEMILKRIYG---YVNKTEMPSlrvHMTSLRQKLSQCHEDaKDIIKTHPRIGY 223
Cdd:PRK10710 164 AEFRLLKTLSHEPGKVFSREQLLNHLYDdyrVVTDRTIDS---HIKNLRRKLESLDAE-QSFIRAVYGVGY 230
REC_OmpR_PhoB cd17618
phosphoacceptor receiver (REC) domain of PhoB response regulator from the OmpR family; The ...
 3-116 3.73e-33

phosphoacceptor receiver (REC) domain of PhoB response regulator from the OmpR family; The transcription factor PhoB is a component of the PhoR/PhoB two-component system, a key regulatory protein network that facilitates response to inorganic phosphate (Pi) starvation conditions by turning on the phosphate (pho) regulon whose products are involved in phosphorus uptake and metabolism. PhoB is a member of the OmpR family of DNA-binding response regulators that contains REC and winged helix-turn-helix (wHTH) DNA-binding output effector domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381133 [Multi-domain]  Cd Length: 118  Bit Score: 115.81  E-value: 3.73e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   3 SKILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ---HTDIPIIVI 79
Cdd:cd17618    1 RTILIVEDEPAIREMIAFNLERAGFDVVEAEDAESAVNLIVEPRPDLILLDWMLPGGSGIQFIRRLKRdemTRDIPIIML 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 613307373  80 SARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVI 116
Cdd:cd17618   81 TARGEEEDKVRGLEAGADDYITKPFSPRELVARIKAV 117
resp_reg_YycF NF040534
response regulator YycF;
4-204 4.76e-33

response regulator YycF;


Pssm-ID: 439744 [Multi-domain]  Cd Length: 231  Bit Score: 119.06  E-value: 4.76e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIVISARQ 83
Cdd:NF040534   2 KILVVDDEKPIADILEFNLKKEGYEVFCAYDGNEALELVEEEVPDLVLLDIMLPGRDGMEVCREVRKKYDMPIIMLTAKD 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  84 EEQTIIQALDNGANDYMTKPFNVDELRARIRVIER-----IAKSHQETNFVFTNGLLSIDFGSKSVVINNQEVHLTPNEF 158
Cdd:NF040534  82 SEIDKVLGLELGADDYVTKPFSTRELIARVKANLRrhqqqNTEEEEEENNEIVIGSLTIHPDAYTVKKRGETIELTHREF 161

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 613307373 159 SLLELLSNHKGKVLTYEMILKRIYGYVNKTEMPSLRVHMTSLRQKL 204
Cdd:NF040534 162 ELLHYLAKHIGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKI 207
RpfG COG3437
Response regulator c-di-GMP phosphodiesterase, RpfG family, contains REC and HD-GYP domains ...
 4-125 2.33e-32

Response regulator c-di-GMP phosphodiesterase, RpfG family, contains REC and HD-GYP domains [Signal transduction mechanisms];


Pssm-ID: 442663 [Multi-domain]  Cd Length: 224  Bit Score: 117.19  E-value: 2.33e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQH---TDIPIIVIS 80
Cdd:COG3437    8 TVLIVDDDPENLELLRQLLRTLGYDVVTAESGEEALELLLEAPPDLILLDVRMPGMDGFELLRLLRADpstRDIPVIFLT 87

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 613307373  81 ARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERIAKSHQE 125
Cdd:COG3437   88 ALADPEDRERALEAGADDYLTKPFDPEELLARVRNALELRRLQRE 132
AtoC COG2204
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ...
 1-125 6.27e-32

DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];


Pssm-ID: 441806 [Multi-domain]  Cd Length: 418  Bit Score: 120.45  E-value: 6.27e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   1 MQSKILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ-HTDIPIIVI 79
Cdd:COG2204    1 SMARILVVDDDPDIRRLLKELLERAGYEVETAASGEEALALLREEPPDLVLLDLRMPGMDGLELLRELRAlDPDLPVILL 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 613307373  80 SARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERIAKSHQE 125
Cdd:COG2204   81 TGYGDVETAVEAIKAGAFDYLTKPFDLEELLAAVERALERRRLRRE 126
REC_OmpR cd17574
phosphoacceptor receiver (REC) domain of OmpR family response regulators; OmpR-like proteins ...
 6-103 2.02e-31

phosphoacceptor receiver (REC) domain of OmpR family response regulators; OmpR-like proteins are one of the most widespread transcriptional regulators. OmpR family members contain REC and winged helix-turn-helix (wHTH) DNA-binding output effector domain. They are involved in the control of environmental stress tolerance (such as the oxidative, osmotic and acid stress response), motility, virulence, outer membrane biogenesis and other processes. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381116 [Multi-domain]  Cd Length: 99  Bit Score: 110.96  E-value: 2.02e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   6 LIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHT-DIPIIVISARQE 84
Cdd:cd17574    1 LVVEDDEEIAELLSDYLEKEGYEVDTAADGEEALELAREEQPDLIILDVMLPGMDGFEVCRRLREKGsDIPIIMLTAKDE 80

                         90
                 ....*....|....*....
gi 613307373  85 EQTIIQALDNGANDYMTKP 103
Cdd:cd17574   81 EEDKVLGLELGADDYITKP 99
ompR PRK09468
osmolarity response regulator; Provisional
 2-180 2.34e-31

osmolarity response regulator; Provisional


Pssm-ID: 181883 [Multi-domain]  Cd Length: 239  Bit Score: 115.07  E-value: 2.34e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   2 QSKILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTD-IPIIVIS 80
Cdd:PRK09468   5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRESFHLMVLDLMLPGEDGLSICRRLRSQNNpTPIIMLT 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  81 ARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERI-------AKSHQETNFVFtnGLLSIDFGSKSVVINNQEVHL 153
Cdd:PRK09468  85 AKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRqapelpgAPSQEEEVIAF--GKFKLNLGTRELFRGDEPMPL 162

                        170       180
                 ....*....|....*....|....*....
gi 613307373 154 TPNEFSLLELLSNHKGKVLTYE--MILKR 180
Cdd:PRK09468 163 TTGEFAVLKALVSHPREPLSRDklMNLAR 191
Response_reg pfam00072
Response regulator receiver domain; This domain receives the signal from the sensor partner in ...
 5-114 1.22e-30

Response regulator receiver domain; This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.


Pssm-ID: 395025 [Multi-domain]  Cd Length: 111  Bit Score: 109.16  E-value: 1.22e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373    5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHT-DIPIIVISARQ 83
Cdd:pfam00072   1 VLIVDDDPLIRELLRQLLEKEGYVVAEADDGKEALELLKEERPDLILLDINMPGMDGLELLKRIRRRDpTTPVIILTAHG 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 613307373   84 EEQTIIQALDNGANDYMTKPFNVDELRARIR 114
Cdd:pfam00072  81 DEDDAVEALEAGADDFLSKPFDPDELLAAIR 111
PRK10161 PRK10161
phosphate response regulator transcription factor PhoB;
1-224 2.04e-29

phosphate response regulator transcription factor PhoB;


Pssm-ID: 182277 [Multi-domain]  Cd Length: 229  Bit Score: 109.81  E-value: 2.04e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   1 MQSKILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHT---DIPII 77
Cdd:PRK10161   1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESmtrDIPVV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  78 VISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERIAKSHQETNFVFTNGlLSIDFGSKSVVINNQEVHLTPNE 157
Cdd:PRK10161  81 MLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQG-LSLDPTSHRVMAGEEPLEMGPTE 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 613307373 158 FSLLELLSNHKGKVLTYEMILKRIYGYVNKTEMPSLRVHMTSLRQKLSqcHEDAKDIIKTHPRIGYQ 224
Cdd:PRK10161 160 FKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALE--PGGHDRMVQTVRGTGYR 224
REC_OmpR_EcPhoP-like cd19934
phosphoacceptor receiver (REC) domain of EcPhoP-like OmpR family response regulators; ...
 5-118 9.73e-29

phosphoacceptor receiver (REC) domain of EcPhoP-like OmpR family response regulators; Escherichia coli PhoP (EcPhoP) is part of the PhoQ/PhoP two-component system (TCS) that regulates virulence genes and plays an essential role in the response of the bacteria to the environment of their mammalian hosts, sensing several stimuli such as extracellular magnesium limitation, low pH, the presence of cationic antimicrobial peptides, and osmotic upshift. This subfamily also includes Brucella suis FeuP, part of the FeuPQ TCS that is involved in the regulation of iron uptake, and Microchaete diplosiphon RcaC, which is required for chromatic adaptation. Members of this subfamily belong to the OmpR family of DNA-binding response regulators, which contain N-terminal receiver (REC) and C-terminal DNA-binding winged helix-turn-helix effector domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381161 [Multi-domain]  Cd Length: 117  Bit Score: 104.67  E-value: 9.73e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQH-TDIPIIVISARQ 83
Cdd:cd19934    1 LLLVEDDALLAAQLKEQLSDAGYVVDVAEDGEEALFQGEEEPYDLVVLDLGLPGMDGLSVLRRWRSEgRATPVLILTARD 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 613307373  84 EEQTIIQALDNGANDYMTKPFNVDELRARIRVIER 118
Cdd:cd19934   81 SWQDKVEGLDAGADDYLTKPFHIEELLARLRALIR 115
REC_OmpR_CpxR cd17623
phosphoacceptor receiver (REC) domain of CpxR-like OmpR family response regulators; CpxR is ...
 5-118 6.39e-28

phosphoacceptor receiver (REC) domain of CpxR-like OmpR family response regulators; CpxR is part of the CpxA/CpxR two-component regulatory system that mediates envelope stress responses that is key for virulence and antibiotic resistance in several Gram negative pathogens. CpxR is a transcription factor/response regulator that controls the expression of numerous genes, including those of the classical porins OmpF and OmpC. It belongs to the OmpR family of DNA-binding response regulators that contain N-terminal receiver (REC) and C-terminal DNA-binding winged helix-turn-helix effector domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381138 [Multi-domain]  Cd Length: 115  Bit Score: 102.38  E-value: 6.39e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIVISARQE 84
Cdd:cd17623    1 ILLIDDDRELTELLTEYLEMEGFNVRAAHDGEQGLAALLEGSPDLVVLDVMLPKMNGLDVLKELRKTSQVPVLMLTARGD 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 613307373  85 EQTIIQALDNGANDYMTKPFNVDELRARIRVIER 118
Cdd:cd17623   81 DIDRILGLELGADDYLPKPFNPRELVARIRAILR 114
CheY COG0784
CheY-like REC (receiver) domain, includes chemotaxis protein CheY and sporulation regulator ...
 4-114 2.03e-27

CheY-like REC (receiver) domain, includes chemotaxis protein CheY and sporulation regulator Spo0F [Signal transduction mechanisms];


Pssm-ID: 440547 [Multi-domain]  Cd Length: 128  Bit Score: 101.47  E-value: 2.03e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHT---DIPIIVIS 80
Cdd:COG0784    7 RILVVDDNPDNRELLRRLLERLGYEVTTAEDGAEALELLRAGPPDLILLDINMPGMDGLELLRRIRALPrlpDIPIIALT 86

                         90       100       110
                 ....*....|....*....|....*....|....
gi 613307373  81 ARQEEQTIIQALDNGANDYMTKPFNVDELRARIR 114
Cdd:COG0784   87 AYADEEDRERALEAGADDYLTKPVDPEELLEALR 120
PRK10336 PRK10336
two-component system response regulator QseB;
4-225 9.80e-27

two-component system response regulator QseB;


Pssm-ID: 182387 [Multi-domain]  Cd Length: 219  Bit Score: 102.28  E-value: 9.80e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQH-TDIPIIVISAR 82
Cdd:PRK10336   2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKgQREPVLILTAR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  83 QEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERiaKSHQETNFVFTNGLLSIDFGSKSVVINNQEVHLTPNEFSLLE 162
Cdd:PRK10336  82 DALAERVEGLRLGADDYLCKPFALIEVAARLEALMR--RTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLE 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 613307373 163 LLSNHKGKVLTYEMILKRIYGYVNKTEMPSLRVHMTSLRQKLsqchedAKDIIKTHPRIGYQM 225
Cdd:PRK10336 160 LLMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKL------GSDFIRTVHGIGYTL 216
REC cd00156
phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response ...
 6-103 1.81e-26

phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs); Two-component systems (TCSs) involving a sensor and a response regulator are used by bacteria to adapt to changing environments. Processes regulated by two-component systems in bacteria include sporulation, pathogenicity, virulence, chemotaxis, and membrane transport. Response regulators (RRs) share the common phosphoacceptor REC domain and different effector/output domains such as DNA, RNA, ligand-binding, protein-binding, or enzymatic domains. Response regulators regulate transcription, post-transcription or post-translation, or have functions such as methylesterases, adenylate or diguanylate cyclase, c-di-GMP-specific phosphodiesterases, histidine kinases, serine/threonine protein kinases, and protein phosphatases, depending on their output domains. The function of some output domains are still unknown. TCSs are found in all three domains of life - bacteria, archaea, and eukaryotes, however, the presence and abundance of particular RRs vary between the lineages. Archaea encode very few RRs with DNA-binding output domains; most are stand-alone REC domains. Among eukaryotes, TCSs are found primarily in protozoa, fungi, algae, and green plants. REC domains function as phosphorylation-mediated switches within RRs, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381085 [Multi-domain]  Cd Length: 99  Bit Score: 98.07  E-value: 1.81e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   6 LIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQH-TDIPIIVISARQE 84
Cdd:cd00156    1 LIVDDDPAIRELLKSLLEREGYEVDTAADGEEALELLREERPDLVLLDLMMPGMDGLELLRKLRELpPDIPVIVLTAKAD 80

                         90
                 ....*....|....*....
gi 613307373  85 EQTIIQALDNGANDYMTKP 103
Cdd:cd00156   81 EEDAVRALELGADDYLVKP 99
REC_OmpR_MtPhoP-like cd17615
phosphoacceptor receiver (REC) domain of MtPhoP-like OmpR family response regulators; ...
 4-118 2.61e-26

phosphoacceptor receiver (REC) domain of MtPhoP-like OmpR family response regulators; Mycobacterium tuberculosis PhoP (MtPhoP) is part of the PhoP/PhoR two-component system that is involved in phosphate control by stimulating expression of genes involved in scavenging, transport and mobilization of phosphate, and repressing the utilization of nitrogen sources. Also included in this subfamily is Mycobacterium tuberculosis transcriptional regulatory protein TcrX, part of the two-component regulatory system TcrY/TcrX that may be involved in virulence. Members of this subfamily belong to the OmpR family of DNA-binding response regulators, which are characterized by a REC domain and a winged helix-turn-helix (wHTH) DNA-binding output effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381131 [Multi-domain]  Cd Length: 118  Bit Score: 98.19  E-value: 2.61e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHT-DIPIIVISAR 82
Cdd:cd17615    1 RVLVVDDEPNITELLSMALRYEGWDVETAADGAEALAAAREFRPDAVVLDIMLPDMDGLEVLRRLRADGpDVPVLFLTAK 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 613307373  83 QEEQTIIQALDNGANDYMTKPFNVDELRARIRVIER 118
Cdd:cd17615   81 DSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRALLR 116
REC_OmpR_BsPhoP-like cd19937
phosphoacceptor receiver (REC) domain of BsPhoP-like OmpR family response regulators; Bacillus ...
 6-118 2.72e-26

phosphoacceptor receiver (REC) domain of BsPhoP-like OmpR family response regulators; Bacillus subtilis PhoP (BsPhoP) is part of the PhoPR two-component system that participates in a signal transduction network that controls adaptation of the bacteria to phosphate deficiency by regulating (activating or repressing) genes of the Pho regulon upon phosphorylation by PhoR. When activated, PhoPR directs expression of phosphate scavenging enzymes, lowers synthesis of the phosphate-rich wall teichoic acid (WTA) and initiates synthesis of teichuronic acid, a non-phosphate containing replacement anionic polymer. Members of this subfamily belong to the OmpR family of DNA-binding response regulators, which are characterized by a REC domain and a winged helix-turn-helix (wHTH) DNA-binding output effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381164 [Multi-domain]  Cd Length: 116  Bit Score: 98.11  E-value: 2.72e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   6 LIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ---HTDIPIIVISAR 82
Cdd:cd19937    1 LVVDDEEDIVELLKYNLEKEGYEVVTAYDGEEALKRAKDEKPDLIILDLMLPGIDGLEVCRILRSdpkTSSIPIIMLTAK 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 613307373  83 QEEQTIIQALDNGANDYMTKPFNVDELRARIRVIER 118
Cdd:cd19937   81 GEEFDKVLGLELGADDYITKPFSPRELLARVKAVLR 116
CitB COG4565
DNA-binding response regulator DpiB of citrate/malate metabolism [Transcription, Signal ...
 4-114 3.67e-26

DNA-binding response regulator DpiB of citrate/malate metabolism [Transcription, Signal transduction mechanisms];


Pssm-ID: 443622 [Multi-domain]  Cd Length: 138  Bit Score: 98.50  E-value: 3.67e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLL--DVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHT-DIPIIVIS 80
Cdd:COG4565    5 RVLIVEDDPMVAELLrrYLERLPGFEVVGVASSGEEALALLAEHRPDLILLDIYLPDGDGLELLRELRARGpDVDVIVIT 84

                         90       100       110
                 ....*....|....*....|....*....|....
gi 613307373  81 ARQEEQTIIQALDNGANDYMTKPFNVDELRARIR 114
Cdd:COG4565   85 AARDPETVREALRAGVVDYLIKPFTFERLREALE 118
REC_OmpR_ArcA_TorR-like cd17619
phosphoacceptor receiver (REC) domain of ArcA- and TorR-like OmpR family response regulators; ...
 5-114 4.49e-26

phosphoacceptor receiver (REC) domain of ArcA- and TorR-like OmpR family response regulators; This subfamily includes Escherichia coli TorR and ArcA, both OmpR family response regulators that mediate adaptation to changes in various respiratory growth conditions. The TorS-TorR two-component system (TCS) is responsible for the tight regulation of the torCAD operon, which encodes the trimethylamine N-oxide (TMAO) reductase respiratory system in response to anaerobic conditions and the presence of TMAO. The ArcA-ArcB TCS is involved in cell growth during anaerobiosis. ArcA is a global regulator that controls more than 30 operons involved in redox regulation (the Arc modulon). OmpR family DNA-binding response regulators are characterized by a REC domain and a winged helix-turn-helix (wHTH) DNA-binding output effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381134 [Multi-domain]  Cd Length: 113  Bit Score: 97.46  E-value: 4.49e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIVISARQE 84
Cdd:cd17619    3 ILIVEDEPVTRATLKSYFEQEGYDVSEAGDGEEMRQILARQDIDLVLLDINLPGKDGLSLTRELREQSEVGIILVTGRDD 82

                         90       100       110
                 ....*....|....*....|....*....|
gi 613307373  85 EQTIIQALDNGANDYMTKPFNVDELRARIR 114
Cdd:cd17619   83 EVDRIVGLEIGADDYVTKPFNPRELLVRAK 112
REC_RpfG-like cd17551
phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase response regulator ...
 3-114 4.76e-26

phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase response regulator RpfG and similar proteins; Cyclic di-GMP phosphodiesterase response regulator RpfG, together with sensory/regulatory protein RpfC, constitute a two-component system implicated in sensing and responding to the diffusible signal factor (DSF) that is essential for cell-cell signaling. RpfC is a hybrid sensor/histidine kinase that phosphorylates and activates RpfG, which degrades cyclic di-GMP to GMP, leading to the activation of Clp, a global transcriptional regulator that regulates a large set of genes in the DSF pathway. RpfG contains a CheY-like receiver domain attached to a histidine-aspartic acid-glycine-tyrosine-proline (HD-GYP) cyclic di-GMP phosphodiesterase domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381103 [Multi-domain]  Cd Length: 118  Bit Score: 97.51  E-value: 4.76e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   3 SKILIIEDDHAITHLLD-VALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ---HTDIPIIV 78
Cdd:cd17551    1 MRILIVDDNPTNLLLLEaLLRSAGYLEVVSFTDPREALAWCRENPPDLILLDYMMPGMDGLEFIRRLRAlpgLEDVPIVM 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 613307373  79 ISARQEEQTIIQALDNGANDYMTKPFNVDELRARIR 114
Cdd:cd17551   81 ITADTDREVRLRALEAGATDFLTKPFDPVELLARVR 116
REC_OmpR_PrrA-like cd17627
phosphoacceptor receiver (REC) domain of PrrA-like OmpR family response regulators; The ...
 5-118 4.95e-26

phosphoacceptor receiver (REC) domain of PrrA-like OmpR family response regulators; The Mycobacterium tuberculosis PrrA is part of the PrrA/PrrB two-component system (TCS) that has been implicated in early intracellular multiplication and is essential for viability. Also included in this subfamily is Mycobacterium tuberculosis MprA, part of the MprAB TCS that regulates EspR, a key regulator of the ESX-1 secretion system, and is required for establishment and maintenance of persistent infection in a tissue- and stage-specific fashion. PrrA and MprA belong to the OmpR family of DNA-binding response regulators, which contain N-terminal receiver (REC) and C-terminal DNA-binding winged helix-turn-helix effector domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381142 [Multi-domain]  Cd Length: 116  Bit Score: 97.45  E-value: 4.95e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ-HTDIPIIVISARQ 83
Cdd:cd17627    1 ILVVDDDRAVRESLRRSLRFEGYEVETAVDGAEALRVISGNRPDAVVLDVMMPRLDGLEVCRRLRAaGNDLPILVLTARD 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 613307373  84 EEQTIIQALDNGANDYMTKPFNVDELRARIRVIER 118
Cdd:cd17627   81 SVSDRVAGLDAGADDYLVKPFALEELLARVRALLR 115
REC_OmpR_DrrD-like cd17625
phosphoacceptor receiver (REC) domain of DrrD-like OmpR family response regulators; DrrD is a ...
 6-118 5.68e-26

phosphoacceptor receiver (REC) domain of DrrD-like OmpR family response regulators; DrrD is a OmpR/PhoB homolog from Thermotoga maritima whose function is not yet known. This subfamily also includes Streptococcus agalactiae transcriptional regulatory protein DltR, part of the DltS/DltR two-component system (TCS), and Pseudomonas aeruginosa transcriptional activator protein PfeR, part of the PfeR/PfeS TCS, which activates expression of the ferric enterobactin receptor. The DltS/DltR TCS regulates the expression of the dlt operon, which comprises four genes (dltA, dltB, dltC, and dltD) that catalyze the incorporation of D-alanine residues into the lipoteichoic acids. Members of this subfamily belong to the OmpR/PhoB family, which comprises of two domains, an N-terminal receiver domain and a C-terminal DNA-binding winged helix-turn-helix effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381140 [Multi-domain]  Cd Length: 115  Bit Score: 97.29  E-value: 5.68e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   6 LIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIR-QHTDIPIIVISARQE 84
Cdd:cd17625    1 LVVEDEKDLSEAITKHLKKEGYTVDVCFDGEEGLEYALSGIYDLIILDIMLPGMDGLEVLKSLReEGIETPVLLLTALDA 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 613307373  85 EQTIIQALDNGANDYMTKPFNVDELRARIRVIER 118
Cdd:cd17625   81 VEDRVKGLDLGADDYLPKPFSLAELLARIRALLR 114
PRK13856 PRK13856
two-component response regulator VirG; Provisional
 5-223 1.13e-25

two-component response regulator VirG; Provisional


Pssm-ID: 172377 [Multi-domain]  Cd Length: 241  Bit Score: 100.27  E-value: 1.13e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIVIS-ARQ 83
Cdd:PRK13856   4 VLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLASETVDVVVVDLNLGREDGLEIVRSLATKSDVPIIIISgDRL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  84 EEQTIIQALDNGANDYMTKPFNVDELRARIRVIER----IAKSHQETNFVFTNGLLSIDfGSKSVVINNQEVHLTPNEFS 159
Cdd:PRK13856  84 EEADKVVALELGATDFIAKPFGTREFLARIRVALRvrpnVVRTKDRRSFCFADWTLNLR-QRRLISEAGGEVKLTAGEFN 162

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 613307373 160 LLELLSNHKGKVLTYEMILkrIYGYVNKTEM--PSLRVHMTSLRQKLSQCHEDAKdIIKTHPRIGY 223
Cdd:PRK13856 163 LLVAFLEKPRDVLSREQLL--IASRVREEEVydRSIDVLILRLRRKLEQDPANPQ-LIKTARGAGY 225
PRK10766 PRK10766
two-component system response regulator TorR;
1-205 4.22e-25

two-component system response regulator TorR;


Pssm-ID: 182711 [Multi-domain]  Cd Length: 221  Bit Score: 98.19  E-value: 4.22e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   1 MQSKILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIVIS 80
Cdd:PRK10766   1 MSYHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQHVDLILLDINLPGEDGLMLTRELRSRSTVGIILVT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  81 ARQEEQTIIQALDNGANDYMTKPFNVDEL--RA-----RIRVIERIAKSHQETNFVFTNGLLSIDFGSKSVVINNQEVHL 153
Cdd:PRK10766  81 GRTDSIDRIVGLEMGADDYVTKPLELRELlvRVknllwRISLARQAQPHAQEEDNCYRFAGYCLNVSRRTLERNGEPIKL 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 613307373 154 TPNEFSLLELLSNHKGKVLTYEMILKRIygyVNKTEMPSLR---VHMTSLRQKLS 205
Cdd:PRK10766 161 TKAEYELLVAFVTNPGQVLSRERLLRML---SHRVENPNDRtidVLIRRLRHKLN 212
PRK09836 PRK09836
DNA-binding transcriptional activator CusR; Provisional
 4-225 5.19e-25

DNA-binding transcriptional activator CusR; Provisional


Pssm-ID: 182102 [Multi-domain]  Cd Length: 227  Bit Score: 98.07  E-value: 5.19e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ-HTDIPIIVISAR 82
Cdd:PRK09836   2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRSaNKGMPILLLTAL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  83 QEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERIAKSH-QETNFVFTNglLSIDFGSKSVVINNQEVHLTPNEFSLL 161
Cdd:PRK09836  82 GTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAViIESQFQVAD--LMVDLVSRKVTRSGTRITLTSKEFTLL 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 613307373 162 ELLSNHKGKVLTYEMILKRIYGYVNKTEMPSLRVHMTSLRQKLSQCHEdaKDIIKTHPRIGYQM 225
Cdd:PRK09836 160 EFFLRHQGEVLPRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFE--PKLIQTVRGVGYML 221
REC_OmpR_BaeR-like cd19938
phosphoacceptor receiver (REC) domain of BaeR-like OmpR family response regulators; BaeR is ...
 4-116 5.74e-25

phosphoacceptor receiver (REC) domain of BaeR-like OmpR family response regulators; BaeR is part of the BaeSR two-component system that is involved in regulating genes that confer multidrug and metal resistance. In Salmonella, BaeSR induces AcrD and MdtABC drug efflux systems, increasing multidrug and metal resistance. In Escherichia coli, BaeR stimulates multidrug resistance via mdtABC (multidrug transporter ABC, formerly known as yegMNO) genes, which encode a resistance-nodulation-cell division (RND) drug efflux system. Members of this subfamily belong to the OmpR family of DNA-binding response regulators, which are characterized by a REC domain and a winged helix-turn-helix (wHTH) DNA-binding output effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381165 [Multi-domain]  Cd Length: 114  Bit Score: 94.75  E-value: 5.74e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIVISARQ 83
Cdd:cd19938    1 RILIVEDEPKLAQLLIDYLRAAGYAPTLLAHGDQVLPYVRHTPPDLILLDLMLPGTDGLTLCREIRRFSDVPIIMVTARV 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 613307373  84 EEQTIIQALDNGANDYMTKPFNVDELRARIRVI 116
Cdd:cd19938   81 EEIDRLLGLELGADDYICKPYSPREVVARVKAI 113
REC_OmpR_MtrA-like cd17626
phosphoacceptor receiver (REC) domain of MtrA-like OmpR family response regulators; MtrA is ...
 3-114 6.30e-25

phosphoacceptor receiver (REC) domain of MtrA-like OmpR family response regulators; MtrA is part of MtrA/MtrB (or MtrAB), a highly conserved two-component system (TCS) implicated in the regulation of cell division in the actinobacteria. In unicellular Mycobacterium tuberculosis, MtrAB coordinates DNA replication with cell division and regulates the transcription of resuscitation-promoting factor B. In filamentous Streptomyces venezuelae, it links antibiotic production to sporulation. MtrA belongs to the OmpR family of DNA-binding response regulators that contain N-terminal receiver (REC) and C-terminal DNA-binding winged helix-turn-helix effector domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381141 [Multi-domain]  Cd Length: 115  Bit Score: 94.84  E-value: 6.30e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   3 SKILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIVISAR 82
Cdd:cd17626    1 ARILVVDDDAALAEMIGIVLRGEGFDPAFCGDGTQALAAFREVRPDLVLLDLMLPGIDGIEVCRQIRAESGVPIVMLTAK 80

                         90       100       110
                 ....*....|....*....|....*....|..
gi 613307373  83 QEEQTIIQALDNGANDYMTKPFNVDELRARIR 114
Cdd:cd17626   81 SDTVDVVLGLESGADDYVAKPFKPKELVARIR 112
trans_reg_C cd00383
DNA-binding effector domain of two-component system response regulators; Bacteria and some ...
 135-225 7.83e-25

DNA-binding effector domain of two-component system response regulators; Bacteria and some eukaryotes use two-component signal transduction systems to detect and respond to changes in the environment. The systems consists of a sensor histidine kinase and a response regulator. The former autophosphorylates a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. This C-terminal effector domain belongs to the winged helix-turn-helix family of transcriptional regulators and contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunit of RNA polymerase.


Pssm-ID: 294013 [Multi-domain]  Cd Length: 89  Bit Score: 93.70  E-value: 7.83e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373 135 LSIDFGSKSVVINNQEVHLTPNEFSLLELLSNHKGKVLTYEMILKRIYGYVNKTEMPSLRVHMTSLRQKLSQCHEDakDI 214
Cdd:cd00383    1 LRLDPARREVTVDGEEVELTPKEFELLELLARNPGRVVSREELLEAVWGYDYEVDDRTVDVHISRLRKKLEDDPEP--RL 78

                         90
                 ....*....|.
gi 613307373 215 IKTHPRIGYQM 225
Cdd:cd00383   79 IKTVRGVGYRL 89
REC_OmpR_YycF-like cd17614
phosphoacceptor receiver (REC) domain of YrcF-like OmpR family response regulators; YycF ...
 5-118 9.56e-25

phosphoacceptor receiver (REC) domain of YrcF-like OmpR family response regulators; YycF appears to play an important role in cell wall integrity in a wide range of gram-positive bacteria, and may also modulate cell membrane integrity. It functions as part of a phosphotransfer system that ultimately controls the levels of competence within the bacteria. YycF belongs to the OmpR family of response regulators, which are characterized by a REC domain and a winged helix-turn-helix effector domain involved in DNA binding. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381130 [Multi-domain]  Cd Length: 115  Bit Score: 94.03  E-value: 9.56e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIVISARQE 84
Cdd:cd17614    1 ILVVDDEKPISDILKFNLTKEGYEVVTAYDGREALEKVEEEQPDLILLDLMLPEKDGLEVCREVRKTSNVPIIMLTAKDS 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 613307373  85 EQTIIQALDNGANDYMTKPFNVDELRARIRVIER 118
Cdd:cd17614   81 EVDKVLGLELGADDYVTKPFSNRELLARVKANLR 114
REC_OmpR_NsrR-like cd18159
phosphoacceptor receiver (REC) domain of Streptococcus agalactiae NsrR-like OmpR family ...
 5-116 1.39e-24

phosphoacceptor receiver (REC) domain of Streptococcus agalactiae NsrR-like OmpR family response regulators; Streptococcus agalactiae NsrR is a lantibiotic resistance-associated response regulator and is part of the nisin resistance operon. It is a member of the NsrRK two-component system (TCS) that is involved in the regulation of lantibiotic resistance genes such as a membrane-associated lipoprotein of LanI, and the nsr gene cluster which encodes for the resistance protein NSR and the ABC transporter NsrFP, both conferring resistance against nisin. This subfamily also includes Staphylococcus epidermidis GraR, part of the GraR/GraS TCS involved in resistance against cationic antimicrobial peptides, and Bacillus subtilis BceR, part of the BceS/BceR TCS involved in the regulation of bacitracin resistance. Members of this subfamily belong to the OmpR family of DNA-binding response regulators, which contain N-terminal receiver (REC) and C-terminal DNA-binding winged helix-turn-helix effector domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381143 [Multi-domain]  Cd Length: 113  Bit Score: 93.89  E-value: 1.39e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIVISARQE 84
Cdd:cd18159    1 ILIVEDDETIASLLKKHLEKWGYEVVLIEDFEDVLEEFLQFKPDLVLLDINLPYFDGFYWCREIRQISNVPIIFISSRDD 80

                         90       100       110
                 ....*....|....*....|....*....|..
gi 613307373  85 EQTIIQALDNGANDYMTKPFNVDELRARIRVI 116
Cdd:cd18159   81 NMDQVMAINMGGDDYITKPFDLDVLLAKIKAI 112
PRK11517 PRK11517
DNA-binding response regulator HprR;
4-225 1.96e-23

DNA-binding response regulator HprR;


Pssm-ID: 183172 [Multi-domain]  Cd Length: 223  Bit Score: 93.81  E-value: 1.96e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALTLDYYNV-TTADNATQAHFKIQIDKPdVILLDLGLPDKDGLCLISEIRQHTDIPIIVISAR 82
Cdd:PRK11517   2 KILLIEDNQRTQEWVTQGLSEAGYVIdAVSDGRDGLYLALKDDYA-LIILDIMLPGMDGWQILQTLRTAKQTPVICLTAR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  83 QEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERiakSHQETNFVFTNGLLSIDFGSKSVVINNQEVHLTPNEFSLLE 162
Cdd:PRK11517  81 DSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR---QHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLW 157

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 613307373 163 LLSNHKGKVLTYEMILKRIYGYVNKTEMPSLRVHMTSLRQKLSQCHEdaKDIIKTHPRIGYQM 225
Cdd:PRK11517 158 LLASRAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFP--EKLIATIRGMGYSF 218
COG4567 COG4567
DNA-binding response regulator, ActR/RegA family, consists of REC and Fis-type HTH domains ...
 2-114 3.92e-23

DNA-binding response regulator, ActR/RegA family, consists of REC and Fis-type HTH domains [Signal transduction mechanisms, Transcription];


Pssm-ID: 443624 [Multi-domain]  Cd Length: 177  Bit Score: 91.90  E-value: 3.92e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   2 QSKILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQH-TDIPIIVIS 80
Cdd:COG4567    4 DRSLLLVDDDEAFARVLARALERRGFEVTTAASVEEALALLEQAPPDYAVLDLRLGDGSGLDLIEALRERdPDARIVVLT 83

                         90       100       110
                 ....*....|....*....|....*....|....
gi 613307373  81 ARQEEQTIIQALDNGANDYMTKPFNVDELRARIR 114
Cdd:COG4567   84 GYASIATAVEAIKLGADDYLAKPADADDLLAALE 117
PRK11173 PRK11173
two-component response regulator; Provisional
 1-183 9.35e-23

two-component response regulator; Provisional


Pssm-ID: 183013 [Multi-domain]  Cd Length: 237  Bit Score: 92.39  E-value: 9.35e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   1 MQS-KILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIVI 79
Cdd:PRK11173   1 MQTpHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSENDINLVIMDINLPGKNGLLLARELREQANVALMFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  80 SARQEEQTIIQALDNGANDYMTKPFNVDEL--RAR------IRVIERIAKSHQETNFVFtNGlLSIDFGSKSVVINNQEV 151
Cdd:PRK11173  81 TGRDNEVDKILGLEIGADDYITKPFNPRELtiRARnllsrtMNLGTVSEERRSVESYKF-NG-WELDINSRSLISPDGEQ 158

                        170       180       190
                 ....*....|....*....|....*....|...
gi 613307373 152 HLTP-NEFSLLELLSNHKGKVLTYEMILKRIYG 183
Cdd:PRK11173 159 YKLPrSEFRAMLHFCENPGKIQSRAELLKKMTG 191
PRK10701 PRK10701
DNA-binding transcriptional regulator RstA; Provisional
 3-223 1.22e-22

DNA-binding transcriptional regulator RstA; Provisional


Pssm-ID: 236738 [Multi-domain]  Cd Length: 240  Bit Score: 92.01  E-value: 1.22e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   3 SKILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIVISAR 82
Cdd:PRK10701   2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILREQPDLVLLDIMLPGKDGMTICRDLRPKWQGPIVLLTSL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  83 QEEQTIIQALDNGANDYM--TKPFNVdeLRARIRVIERIAKSHQETNFVFTN----------GLLSIDFGSKSVVINNQE 150
Cdd:PRK10701  82 DSDMNHILALEMGACDYIlkTTPPAV--LLARLRLHLRQNEQATQTKGLQETsltpykalhfGTLTIDPVNRQVTLAGEE 159

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 613307373 151 VHLTPNEFSLLELLSNHKGKVLTYEMILKRIYGyVNKTEMP-SLRVHMTSLRQKLsqcHEDAKDI--IKTHPRIGY 223
Cdd:PRK10701 160 ISLSTADFDLLWELATHAGQIMDRDALLKNLRG-VSYDGLDrSVDVAISRLRKKL---LDNAAEPyrIKTVRNKGY 231
Trans_reg_C pfam00486
Transcriptional regulatory protein, C terminal;
148-225 2.29e-22

Transcriptional regulatory protein, C terminal;


Pssm-ID: 425712 [Multi-domain]  Cd Length: 77  Bit Score: 86.80  E-value: 2.29e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 613307373  148 NQEVHLTPNEFSLLELLSNHKGKVLTYEMILKRIYGYVNKTEMPSLRVHMTSLRQKLSQChEDAKDIIKTHPRIGYQM 225
Cdd:pfam00486   1 GEEVELTPKEFKLLELLAENPGRVVSREQLLEEVWGEDYDVDDNTVDVHISRLRKKLEDD-PRDPRLIKTVRGVGYRL 77
PRK15479 PRK15479
transcriptional regulator TctD;
4-205 2.37e-22

transcriptional regulator TctD;


Pssm-ID: 185376 [Multi-domain]  Cd Length: 221  Bit Score: 90.94  E-value: 2.37e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQH-TDIPIIVISAR 82
Cdd:PRK15479   2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQSEMYALAVLDINMPGMDGLEVLQRLRKRgQTLPVLLLTAR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  83 QEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERiaKSHQETNFVFTNGLLSIDfGSKSVVINNQEVHLTPNEFSLLE 162
Cdd:PRK15479  82 SAVADRVKGLNVGADDYLPKPFELEELDARLRALLR--RSAGQVQEVQQLGELIFH-DEGYFLLQGQPLALTPREQALLT 158

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 613307373 163 LLSNHKGKVLTYEMILKRIYGYVNKTEMPSLRVHMTSLRQKLS 205
Cdd:PRK15479 159 VLMYRRTRPVSRQQLFEQVFSLNDEVSPESIELYIHRLRKKLQ 201
REC_OmpR_BfmR-like cd19939
phosphoacceptor receiver (REC) domain of BfmR-like OmpR family response regulators; ...
 4-118 6.58e-22

phosphoacceptor receiver (REC) domain of BfmR-like OmpR family response regulators; Acinetobacter baumannii BfmR is part of the BfmR/S two-component system that functions as the master regulator of biofilm initiation. BfmR confers resistance to complement-mediated bactericidal activity, independent of capsular polysaccharide, and also increases resistance to the clinically important antimicrobials meropenem and colistin, making it a potential antimicrobial target. Its inhibition would have the dual benefit of significantly decreasing in vivo survival and increasing sensitivity to selected antimicrobials. Members of this subfamily belong to the OmpR family of DNA-binding response regulators, which are characterized by a REC domain and a winged helix-turn-helix (wHTH) DNA-binding output effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381166 [Multi-domain]  Cd Length: 116  Bit Score: 87.04  E-value: 6.58e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIVISARQ 83
Cdd:cd19939    1 RILIVEDELELARLTRDYLIKAGLEVSVFTDGQRAVRRIIDEQPSLVVLDIMLPGMDGLTVCREVREHSHVPILMLTART 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 613307373  84 EEQTIIQALDNGANDYMTKPFNVDELRARIRVIER 118
Cdd:cd19939   81 EEMDRVLGLEMGADDYLCKPFSPRELLARVRALLR 115
REC_NtrC cd19919
phosphoacceptor receiver (REC) domain of DNA-binding transcriptional regulator NtrC; ...
 4-118 8.02e-22

phosphoacceptor receiver (REC) domain of DNA-binding transcriptional regulator NtrC; DNA-binding transcriptional regulator NtrC is also called nitrogen regulation protein NR(I) or nitrogen regulator I (NRI). It contains an N-terminal receiver (REC) domain, followed by a sigma-54 interaction domain, and a C-terminal helix-turn-helix DNA-binding domain. It is part of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. DNA-binding response regulator NtrC is phosphorylated by NtrB; phosphorylation of the N-terminal REC domain activates the central sigma-54 interaction domain and leads to the transcriptional activation from promoters that require sigma(54)-containing RNA polymerase. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381146 [Multi-domain]  Cd Length: 116  Bit Score: 86.56  E-value: 8.02e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ-HTDIPIIVISAR 82
Cdd:cd19919    2 TVWIVDDDSSIRWVLERALAGAGLTVTSFENAQEALAALASSQPDVLISDIRMPGMDGLALLAQIKQrHPDLPVIIMTAH 81

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 613307373  83 QEEQTIIQALDNGANDYMTKPFNVDELrarIRVIER 118
Cdd:cd19919   82 SDLDSAVSAYQGGAFEYLPKPFDIDEA---VALVER 114
REC_OmpR_VirG cd17594
phosphoacceptor receiver (REC) domain of VirG-like OmpR family response regulators; VirG is ...
 4-115 8.55e-22

phosphoacceptor receiver (REC) domain of VirG-like OmpR family response regulators; VirG is part of the VirA/VirG two-component system that regulates the expression of virulence (vir) genes. The histidine kinase VirA senses a phenolic wound response signal, undergoes autophosphorylation, and phosphorelays to the VirG response regulator, which induces transcription of the vir regulon. VirG belongs to the OmpR family of DNA-binding response regulators that contain N-terminal receiver (REC) and C-terminal DNA-binding winged helix-turn-helix effector domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381125 [Multi-domain]  Cd Length: 113  Bit Score: 86.35  E-value: 8.55e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIVISA-R 82
Cdd:cd17594    1 HVLVVDDDAAMRHLLILYLRERGFDVTAAADGAEEARLMLHRRVDLVLLDLRLGQESGLDLLRTIRARSDVPIIIISGdR 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 613307373  83 QEEQTIIQALDNGANDYMTKPFNVDELRARIRV 115
Cdd:cd17594   81 RDEIDRVVGLELGADDYLAKPFGLRELLARVRA 113
YesN COG4753
Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding ...
 4-103 2.21e-21

Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains [Signal transduction mechanisms, Transcription];


Pssm-ID: 443786 [Multi-domain]  Cd Length: 103  Bit Score: 85.21  E-value: 2.21e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALT--LDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ-HTDIPIIVIS 80
Cdd:COG4753    1 KVLIVDDEPLIREGLKRILEweAGFEVVGEAENGEEALELLEEHKPDLVITDINMPGMDGLELLEAIRElDPDTKIIILS 80

                         90       100
                 ....*....|....*....|...
gi 613307373  81 ARQEEQTIIQALDNGANDYMTKP 103
Cdd:COG4753   81 GYSDFEYAQEAIKLGADDYLLKP 103
REC_Rcp-like cd17557
phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and ...
 4-118 2.56e-21

phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains; This family is composed of response regulators (RRs) that are members of phytochrome-associated, light-sensing two-component signal transduction pathways such as Synechocystis sp. Rcp1, Tolypothrix sp. RcpA, and Agrobacterium tumefaciens bacteriophytochrome response regulator AtBRR. They are stand-alone RRs containing only a REC domain with no output/effector domain. The REC domain itself functions as an effector domain. Also included in this family us Methanosaeta harundinacea methanogenesis regulatory protein FilR2, also a stand-alone RR. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381108 [Multi-domain]  Cd Length: 129  Bit Score: 85.55  E-value: 2.56e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAithllDVALTLD-------YYNVTTADNATQA-HF------KIQIDKPDVILLDLGLPDKDGLCLISEIR 69
Cdd:cd17557    1 TILLVEDNPG-----DAELIQEafkeagvPNELHVVRDGEEAlDFlrgegeYADAPRPDLILLDLNMPRMDGFEVLREIK 75

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 613307373  70 QHTD---IPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIER 118
Cdd:cd17557   76 ADPDlrrIPVVVLTTSDAEEDIERAYELGANSYIVKPVDFEEFVEAIRSLGE 127
PRK11361 PRK11361
acetoacetate metabolism transcriptional regulator AtoC;
4-114 1.31e-20

acetoacetate metabolism transcriptional regulator AtoC;


Pssm-ID: 183099 [Multi-domain]  Cd Length: 457  Bit Score: 89.52  E-value: 1.31e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALTLDYYNVTTADNATQA--HFKIQidKPDVILLDLGLPDKDGLCLISEIR-QHTDIPIIVIS 80
Cdd:PRK11361   6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTAlhLFADI--HPDVVLMDIRMPEMDGIKALKEMRsHETRTPVILMT 83

                         90       100       110
                 ....*....|....*....|....*....|....
gi 613307373  81 ARQEEQTIIQALDNGANDYMTKPFNVDELRARIR 114
Cdd:PRK11361  84 AYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQ 117
REC_DC-like cd17534
phosphoacceptor receiver (REC) domain of modulated diguanylate cyclase and similar domains; ...
 4-113 2.37e-20

phosphoacceptor receiver (REC) domain of modulated diguanylate cyclase and similar domains; This groups includes a modulated diguanylate cyclase containing a PAS sensor domain from Desulfovibrio desulfuricans G20. Members of this group contain N-terminal REC domains and various output domains including the GGDEF, histidine kinase, and helix-turn-helix (HTH) DNA binding domains. Also included in this family is Mycobacterium tuberculosis PdtaR, a transcriptional antiterminator that contains a REC domain and an ANTAR RNA-binding output domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381089 [Multi-domain]  Cd Length: 117  Bit Score: 82.84  E-value: 2.37e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALT-LDYYNVTTADNATQAHFKIQIDKPDVILLDLGLP-DKDGLCLISEIRQHTDIPIIVISA 81
Cdd:cd17534    2 KILIVEDEAIIALDLKEILEsLGYEVVGIADSGEEAIELAEENKPDLILMDINLKgDMDGIEAAREIREKFDIPVIFLTA 81

                         90       100       110
                 ....*....|....*....|....*....|..
gi 613307373  82 RQEEQTIIQALDNGANDYMTKPFNVDELRARI 113
Cdd:cd17534   82 YSDEETLERAKETNPYGYLVKPFNERELKAAI 113
Trans_reg_C smart00862
Transcriptional regulatory protein, C terminal; This domain is almost always found associated ...
 148-225 3.92e-20

Transcriptional regulatory protein, C terminal; This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.


Pssm-ID: 214866 [Multi-domain]  Cd Length: 76  Bit Score: 81.06  E-value: 3.92e-20
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 613307373   148 NQEVHLTPNEFSLLELLSNHKGKVLTYEMILKRIYGYVNKTEMPSLRVHMTSLRQKLSQchEDAKDIIKTHPRIGYQM 225
Cdd:smart00862   1 GEPIKLTPKEFRLLELLLRNPGRVVSREELLEAVWGDDEDVDDNTLDVHISRLRKKLED--DGDPRLIETVRGVGYRL 76
REC_NarL-like cd17535
phosphoacceptor receiver (REC) domain of NarL (Nitrate/Nitrite response regulator L) family ...
 5-116 7.29e-20

phosphoacceptor receiver (REC) domain of NarL (Nitrate/Nitrite response regulator L) family response regulators; The NarL family is one of the more abundant families of DNA-binding response regulators (RRs). Members of the NarL family contain a REC domain and a helix-turn-helix (HTH) DNA-binding output domain, with a majority of members containing a LuxR-type HTH domain. They function as transcriptional regulators. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381090 [Multi-domain]  Cd Length: 117  Bit Score: 81.40  E-value: 7.29e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIeDDH-----AITHLLDVALTLDyyNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHT-DIPIIV 78
Cdd:cd17535    1 VLIV-DDHplvreGLRRLLESEPDIE--VVGEAADGEEALALLRELRPDVVLMDLSMPGMDGIEALRRLRRRYpDLKVIV 77

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 613307373  79 ISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVI 116
Cdd:cd17535   78 LTAHDDPEYVLRALKAGAAGYLLKDSSPEELIEAIRAV 115
REC_D1_PleD-like cd17538
first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar ...
 4-104 1.70e-19

first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains; PleD contains a REC domain (D1) with the phosphorylatable aspartate, a REC-like adaptor domain (D2), and the enzymatic diguanylate cyclase (DGC) domain, also called the GGDEF domain according to a conserved sequence motif, as its output domain. The GGDEF-containing PleD response regulators are global regulators of cell metabolism in some important human pathogens. This model describes D1 of PleD and similar domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381093 [Multi-domain]  Cd Length: 104  Bit Score: 80.23  E-value: 1.70e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDG--LC-LISEIRQHTDIPIIVIS 80
Cdd:cd17538    1 KILVVDDEPANRELLEALLSAEGYEVLTADSGQEALALAEEELPDLILLDVMMPGMDGfeVCrRLKEDPETRHIPVIMIT 80

                         90       100
                 ....*....|....*....|....
gi 613307373  81 ARQEEQTIIQALDNGANDYMTKPF 104
Cdd:cd17538   81 ALDDREDRIRGLEAGADDFLSKPI 104
AmiR COG3707
Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding ...
 1-125 5.12e-19

Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains [Signal transduction mechanisms, Transcription];


Pssm-ID: 442921 [Multi-domain]  Cd Length: 194  Bit Score: 81.54  E-value: 5.12e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   1 MQSKILIIEDDHAITHLLDVALT-LDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIVI 79
Cdd:COG3707    2 RGLRVLVVDDEPLRRADLREGLReAGYEVVAEAADGEDAVELVRELKPDLVIVDIDMPDRDGLEAARQISEERPAPVILL 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 613307373  80 SARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERIAKSHQE 125
Cdd:COG3707   82 TAYSDPELIERALEAGVSAYLVKPLDPEDLLPALELALARFRELRA 127
REC_OmpR_kpRstA-like cd17622
phosphoacceptor receiver (REC) domain of kpRstA-like OmpR family response regulators; ...
 3-118 5.67e-19

phosphoacceptor receiver (REC) domain of kpRstA-like OmpR family response regulators; Klebsiella pneumoniae RstA (kpRstA) is part of the RstA/RstB two-component regulatory system that may play a regulatory role in virulence. It belongs to the OmpR family of DNA-binding response regulators that contain N-terminal receiver (REC) and C-terminal DNA-binding winged helix-turn-helix effector domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381137 [Multi-domain]  Cd Length: 116  Bit Score: 79.34  E-value: 5.67e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   3 SKILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIVISAR 82
Cdd:cd17622    1 TRILLVEDDPKLARLIADFLESHGFNVVVEHRGDRALEVIAREKPDAVLLDIMLPGIDGLTLCRDLRPKYQGPILLLTAL 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 613307373  83 QEEQTIIQALDNGANDYMTKPFNVDELRARIRVIER 118
Cdd:cd17622   81 DSDIDHILGLELGADDYVVKPVEPAVLLARLRALLR 116
REC_OmpR_CusR-like cd19935
phosphoacceptor receiver (REC) domain of CusR-like OmpR family response regulators; ...
 5-103 6.58e-19

phosphoacceptor receiver (REC) domain of CusR-like OmpR family response regulators; Escherichia coli CusR is part of the CusS/CusR two-component system (TCS) that is involved in response to copper and silver. Other members of this subfamily include Escherichia coli PcoR, Pseudomonas syringae CopR, and Streptomyces coelicolor CutR, which are all transcriptional regulatory proteins and components of TCSs that regulate genes involved in copper resistance and/or metabolism. member of the subfamily is Escherichia coli HprR (hydrogen peroxide response regulator), previously called YdeW, which is part of the HprSR (or YedVW) TCS involved in stress response to hydrogen peroxide, as well as Cupriavidus metallidurans CzcR, which is part of the CzcS/CzcR TCS involved in the control of cobalt, zinc, and cadmium homeostasis. Members of this subfamily belong to the OmpR family of DNA-binding response regulators, which contain N-terminal receiver (REC) and C-terminal DNA-binding winged helix-turn-helix effector domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381162 [Multi-domain]  Cd Length: 100  Bit Score: 78.64  E-value: 6.58e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHT-DIPIIVISARQ 83
Cdd:cd19935    1 ILVVEDEKKLAEYLKKGLTEEGYAVDVAYDGEDGLHLALTNEYDLIILDVMLPGLDGLEVLRRLRAAGkQTPVLMLTARD 80

                         90       100
                 ....*....|....*....|
gi 613307373  84 EEQTIIQALDNGANDYMTKP 103
Cdd:cd19935   81 SVEDRVKGLDLGADDYLVKP 100
REC_TrrA-like cd17554
phosphoacceptor receiver (REC) domain of Thermotoga maritima response regulator TrrA and ...
 3-116 8.20e-19

phosphoacceptor receiver (REC) domain of Thermotoga maritima response regulator TrrA and similar domains; Thermotoga maritima contains a two-component signal transduction system (TCS) composed of the ThkA sensory histidine kinase (HK) and its cognate response regulator (RR) TrrA; the specific function of the system is unknown. TCSs couple environmental stimuli to adaptive responses. TrrA is a stand-alone RR containing only a REC domain with no output/effector domain. The REC domain itself functions as an effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381106 [Multi-domain]  Cd Length: 113  Bit Score: 78.80  E-value: 8.20e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   3 SKILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHT-DIPIIVISA 81
Cdd:cd17554    1 KKILVVDDEENIRELYKEELEDEGYEVVTAGNGEEALEKLESEDPDLVILDIKMPGMDGLETLRKIREKKpDLPVIICTA 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 613307373  82 RQEEQTIIQALdnGANDYMTKPFNVDELRARIRVI 116
Cdd:cd17554   81 YSEYKSDFSSW--AADAYVVKSSDLTELKETIKRL 113
REC_OmpR_CtrA cd17616
phosphoacceptor receiver (REC) domain of CtrA-like OmpR family response regulators; CtrA is ...
 5-116 2.08e-18

phosphoacceptor receiver (REC) domain of CtrA-like OmpR family response regulators; CtrA is part of the CckA-ChpT-CtrA phosphorelay that is conserved in alphaproteobacteria and is important in orchestrating the cell cycle, polar development, and flagellar biogenesis. CtrA is the master regulator of flagella synthesis genes and also regulates genes involved in the cell cycle, exopolysaccharide synthesis, and cyclic-di-GMP signaling. CtrA is active as a transcription factor when phosphorylated. It is a member of the OmpR family of DNA-binding response regulators, characterized by a REC domain and a winged helix-turn-helix (wHTH) DNA-binding output effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381132 [Multi-domain]  Cd Length: 114  Bit Score: 77.83  E-value: 2.08e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIR-QHTDIPIIVISARQ 83
Cdd:cd17616    1 VLLIEDDSATAQSIELMLKSEGFNVYTTDLGEEGLDLGKLYDYDIILLDLNLPDMSGYEVLRTLRlAKVKTPILILSGLA 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 613307373  84 EEQTIIQALDNGANDYMTKPFNVDELRARIRVI 116
Cdd:cd17616   81 DIEDKVKGLGFGADDYMTKPFHKDELVARIHAI 113
REC_2_DhkD-like cd17580
second phosphoacceptor receiver (REC) domain of Dictyostelium discoideum hybrid signal ...
 5-113 3.56e-18

second phosphoacceptor receiver (REC) domain of Dictyostelium discoideum hybrid signal transduction histidine kinase D and similar domains; Dictyostelium discoideum hybrid signal transduction histidine kinase D (DhkD) is a large protein that contains two histidine kinase (HK) and two REC domains on the intracellular side of a single pass transmembrane domain, and extracellular PAS and PAC domains that likely are involved in ligand binding. This model represents the second REC domain and similar domains. DhkD activates the cAMP phosphodiesterase RegA to ensure proper prestalk and prespore patterning, tip formation, and the vertical elongation of the mound into a finger, in Dictyostelium discoideum. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381118 [Multi-domain]  Cd Length: 112  Bit Score: 76.73  E-value: 3.56e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQH---TDIPIIVISA 81
Cdd:cd17580    1 ILVVDDNEDAAEMLALLLELEGAEVTTAHSGEEALEAAQRFRPDVILSDIGMPGMDGYELARRLRELpwlANTPAIALTG 80

                         90       100       110
                 ....*....|....*....|....*....|..
gi 613307373  82 RQEEQTIIQALDNGANDYMTKPFNVDELRARI 113
Cdd:cd17580   81 YGQPEDRERALEAGFDAHLVKPVDPDELIELI 112
REC_citrate_TCS cd19925
phosphoacceptor receiver (REC) domain of citrate family two-component system response ...
 4-113 3.94e-18

phosphoacceptor receiver (REC) domain of citrate family two-component system response regulators; This family includes Lactobacillus paracasei MaeR, Escherichia coli DcuR and DpiA, Klebsiella pneumoniae CitB, as well as Bacillus DctR, MalR, and CitT. These are all response regulators of two-component systems (TCSs) from the citrate family, and are involved in the transcriptional regulation of genes associated with L-malate catabolism (MaeRK), citrate-specific fermentation (DpiAB, CitAB), plasmid inheritance (DpiAB), anaerobic fumarate respiratory system (DcuRS), and malate transport/utilization (MalKR). REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381152 [Multi-domain]  Cd Length: 118  Bit Score: 76.90  E-value: 3.94e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLL-DVALTLDYYNVT-TADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIR-QHTDIPIIVIS 80
Cdd:cd19925    2 NVLIVEDDPMVAEIHrAYVEQVPGFTVIgTAGTGEEALKLLKERQPDLILLDIYLPDGNGLDLLRELRaAGHDVDVIVVT 81

                         90       100       110
                 ....*....|....*....|....*....|...
gi 613307373  81 ARQEEQTIIQALDNGANDYMTKPFNVDELRARI 113
Cdd:cd19925   82 AANDVETVREALRLGVVDYLIKPFTFERLRQRL 114
REC_NtrC1-like cd17572
phosphoacceptor receiver (REC) domain of nitrogen regulatory protein C 1 (NtrC1) from Aquifex ...
 5-114 6.84e-18

phosphoacceptor receiver (REC) domain of nitrogen regulatory protein C 1 (NtrC1) from Aquifex aeolicus and similar NtrC family response regulators; NtrC family proteins are transcriptional regulators that have REC, AAA+ ATPase/sigma-54 interaction, and DNA-binding output domains. This subfamily of NtrC proteins include Aquifex aeolicus NtrC1 and Vibrio quorum-sensing signal integrator LuxO. The N-terminal REC domain of NtrC proteins regulate the activity of the protein and its phosphorylation controls the AAA+ domain oligomerization, while the central AAA+ domain participates in nucleotide binding, hydrolysis, oligomerization, and sigma54 interaction. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381114 [Multi-domain]  Cd Length: 121  Bit Score: 76.47  E-value: 6.84e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ-HTDIPIIVISARQ 83
Cdd:cd17572    1 VLLVEDSPSLAALYQEYLSDEGYKVTHVETGKEALAFLSDQPPDVVLLDLKLPDMSGMEILKWIQErSLPTSVIVITAHG 80

                         90       100       110
                 ....*....|....*....|....*....|.
gi 613307373  84 EEQTIIQALDNGANDYMTKPFNVDELRARIR 114
Cdd:cd17572   81 SVDIAVEAMRLGAYDFLEKPFDADRLRVTVR 111
REC_hyHK_CKI1_RcsC-like cd17546
phosphoacceptor receiver (REC) domain of hybrid sensor histidine kinases/response regulators ...
 5-113 2.74e-17

phosphoacceptor receiver (REC) domain of hybrid sensor histidine kinases/response regulators similar to Arabidopsis thaliana CKI1 and Escherichia coli RcsC; This family is composed of hybrid sensor histidine kinases/response regulators that are sensor histidine kinases (HKs) fused with a REC domain, similar to the sensor histidine kinase CKI1 from Arabidopsis thaliana, which is involved in multi-step phosphorelay (MSP) signaling that mediates responses to a variety of important stimuli in plants. MSP involves a signal being transferred from HKs via histidine phosphotransfer proteins (AHP1-AHP5) to nuclear response regulators. The CKI1 REC domain specifically interacts with the downstream signaling protein AHP2, AHP3 and AHP5. The plant MSP system has evolved from the prokaryotic two-component system (TCS), which allows organisms to sense and respond to changes in environmental conditions. This family also includes bacterial hybrid sensor HKs such as Escherichia coli RcsC, which is a component of the Rcs signalling pathway that controls a variety of physiological functions like capsule synthesis, cell division, and motility. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381099 [Multi-domain]  Cd Length: 113  Bit Score: 74.43  E-value: 2.74e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ----HTDIPIIVIS 80
Cdd:cd17546    1 VLVVDDNPVNRKVLKKLLEKLGYEVDVAENGQEALELLKEEPFDLVLMDLQMPVMDGLEATRRIREleggGRRTPIIALT 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 613307373  81 ARQEEQTIIQALDNGANDYMTKPFNVDELRARI 113
Cdd:cd17546   81 ANALEEDREKCLEAGMDDYLSKPVKLDQLKEVL 113
REC_NtrX-like cd17550
phosphoacceptor receiver (REC) domain of nitrogen assimilation regulatory protein NtrX and ...
 5-109 3.11e-17

phosphoacceptor receiver (REC) domain of nitrogen assimilation regulatory protein NtrX and similar proteins; NtrX is part of the two-component regulatory system NtrY/NtrX that is involved in the activation of nitrogen assimilatory genes such as Gln. It is phosphorylated by the histidine kinase NtrY and interacts with sigma-54. NtrX is a member of the NtrC family, characterized by a domain architecture containing an N-terminal REC domain, followed by a central sigma-54 interaction/ATPase domain, and a C-terminal DNA binding domain. NtrC family response regulators are sigma54-dependent transcriptional activators. Also included in this subfamily is Aquifex aeolicus NtrC4. The ability of the central domain to hydrolyze ATP and thus to interact effectively with a complex of RNA polymerase, sigma54, and promoter, is controlled by the phosphorylation status of the REC domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381102 [Multi-domain]  Cd Length: 115  Bit Score: 74.46  E-value: 3.11e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ-HTDIPIIVISARQ 83
Cdd:cd17550    1 ILIVDDEEDIRESLSGILEDEGYEVDTAADGEEALKLIKERRPDLVLLDIWLPDMDGLELLKEIKEkYPDLPVIMISGHG 80

                         90       100
                 ....*....|....*....|....*.
gi 613307373  84 EEQTIIQALDNGANDYMTKPFNVDEL 109
Cdd:cd17550   81 TIETAVKATKLGAYDFIEKPLSLDRL 106
REC_RssB-like cd17555
phosphoacceptor receiver (REC) domain of Pseudomonas aeruginosa RssB and similar domains; ...
 4-103 4.92e-17

phosphoacceptor receiver (REC) domain of Pseudomonas aeruginosa RssB and similar domains; Pseudomonas aeruginosa RssB is an orphan atypical response regulator containing a REC domain and a PP2C-type protein phosphatase output domain. Its function is still unknown. Escherichia RssB, which is not included in this subfamily, is a ClpX adaptor protein which alters ClpX specificity by mediating a specific interaction between ClpX and the substrates such as RpoS, an RNA polymerase sigma factor. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381107 [Multi-domain]  Cd Length: 116  Bit Score: 74.16  E-value: 4.92e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALTLDYYNVTTADNATQ--AHFKIQidKPDVILLDLGLPDKDGLCLISEIRQ-HTDIPIIVIS 80
Cdd:cd17555    2 TILVIDDDEVVRESIAAYLEDSGFQVLQAADGRQglELFRSE--QPDLVLCDLRMPEMDGLEVLKQITKeSPDTPVIVVS 79

                         90       100
                 ....*....|....*....|...
gi 613307373  81 ARQEEQTIIQALDNGANDYMTKP 103
Cdd:cd17555   80 GAGVMSDAVEALRLGAWDYLTKP 102
REC_HP-RR-like cd17573
phosphoacceptor receiver (REC) domain of orphan response regulator HP-RR and similar proteins; ...
 5-113 7.99e-17

phosphoacceptor receiver (REC) domain of orphan response regulator HP-RR and similar proteins; Helicobacter pylori response regulator hp1043 (HP-RR) is an orphan response regulator which is phosphorylation-independent and is essential for growth. HP-RR functions as a cell growth-associated regulator in the absence of post-translational modification. Members of this subfamily contain REC and DNA-binding output domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381115 [Multi-domain]  Cd Length: 110  Bit Score: 73.23  E-value: 7.99e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ-HTDIPIIVISARQ 83
Cdd:cd17573    1 ILLIEDDSTLGKEISKGLNEKGYQADVAESLKDGEYYIDIRNYDLVLVSDKLPDGNGLSIVSRIKEkHPSIVVIVLSDNP 80

                         90       100       110
                 ....*....|....*....|....*....|
gi 613307373  84 EEQTIIQALDNGANDYMTKPFNVDELRARI 113
Cdd:cd17573   81 KTEQEIEAFKEGADDYIAKPFDFKVLVARI 110
glnG PRK10923
nitrogen regulation protein NR(I); Provisional
 1-127 8.70e-17

nitrogen regulation protein NR(I); Provisional


Pssm-ID: 182842 [Multi-domain]  Cd Length: 469  Bit Score: 78.37  E-value: 8.70e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   1 MQ-SKILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ-HTDIPIIV 78
Cdd:PRK10923   1 MQrGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQrHPMLPVII 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 613307373  79 ISARQEEQTIIQALDNGANDYMTKPFNVDELRARI-RVIERIAKSHQETN 127
Cdd:PRK10923  81 MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVeRAISHYQEQQQPRN 130
REC_RegA-like cd17563
phosphoacceptor receiver (REC) domain of photosynthetic apparatus regulatory protein RegA; ...
 4-109 9.02e-17

phosphoacceptor receiver (REC) domain of photosynthetic apparatus regulatory protein RegA; Rhodobacter sphaeroides RegA, also called response regulator PrrA, is the DNA binding regulatory protein of a redox-responsive two-component regulatory system RegB/RegA that is involved in transactivating anaerobic expression of the photosynthetic apparatus. It contains a REC domain and a DNA-binding helix-turn-helix output domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381111 [Multi-domain]  Cd Length: 112  Bit Score: 73.25  E-value: 9.02e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHT-DIPIIV---- 78
Cdd:cd17563    2 SLLLVDDDEVFAERLARALERRGFEVETAHSVEEALALAREEKPDYAVLDLRLGGDSGLDLIPPLRALQpDARIVVltgy 81

                         90       100       110
                 ....*....|....*....|....*....|...
gi 613307373  79 --ISarqeeqTIIQALDNGANDYMTKPFNVDEL 109
Cdd:cd17563   82 asIA------TAVEAIKLGADDYLAKPADADEI 108
REC_CheY4-like cd17562
phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY ...
 4-119 9.07e-17

phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins; CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY4 and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381110 [Multi-domain]  Cd Length: 118  Bit Score: 73.49  E-value: 9.07e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHT---DIPIIVIS 80
Cdd:cd17562    2 KILAVDDSASIRQMVSFTLRGAGYEVVEAADGRDALSKAQSKKFDLIITDQNMPNMDGIELIKELRKLPaykFTPILMLT 81

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 613307373  81 ARQEEQTIIQALDNGANDYMTKPFNVDELrarIRVIERI 119
Cdd:cd17562   82 TESSDEKKQEGKAAGATGWLVKPFDPEQL---LEVVKKV 117
REC_2_GGDEF cd17544
second phosphoacceptor receiver (REC) domain of uncharacterized GGDEF domain proteins; This ...
 4-113 9.82e-17

second phosphoacceptor receiver (REC) domain of uncharacterized GGDEF domain proteins; This family is composed of uncharacterized PleD-like response regulators that contain two N-terminal REC domains and a C-terminal diguanylate cyclase output domain with the characteristic GGDEF motif at the active site. Unlike PleD which contains a REC-like adaptor domain, the second REC domain of these uncharacterized GGDEF domain proteins, described in this model, contains characteristic metal-binding and active site residues. PleD response regulators are global regulators of cell metabolism in some important human pathogens. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381098 [Multi-domain]  Cd Length: 122  Bit Score: 73.32  E-value: 9.82e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDD----HAITHLLDVALtldyYNVTTADNATQAhFKIQIDKPDV--ILLDLGLPDKDGLCLISEIRQH---TDI 74
Cdd:cd17544    2 KVLVVDDSatsrNHLRALLRRHN----FQVLEAANGQEA-LEVLEQHPDIklVITDYNMPEMDGFELVREIRKKysrDQL 76

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 613307373  75 PIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARI 113
Cdd:cd17544   77 AIIGISASGDNALSARFIKAGANDFLTKPFLPEEFYCRV 115
REC_DivK-like cd17548
phosphoacceptor receiver (REC) domain of DivK and similar proteins; Caulobacter crescentus ...
 4-114 1.05e-16

phosphoacceptor receiver (REC) domain of DivK and similar proteins; Caulobacter crescentus DivK is an essential response regulator that is involved in the complex phosphorelay pathways controlling both cell division and motility. It localizes cell cycle regulators to specific poles of the cell during division. DivK contains a stand-alone REC domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381100 [Multi-domain]  Cd Length: 115  Bit Score: 72.96  E-value: 1.05e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ--HT-DIPIIVIS 80
Cdd:cd17548    1 KILIVEDNPLNMKLARDLLESAGYEVLEAADGEEALEIARKEKPDLILMDIQLPGMDGLEATRLLKEdpATrDIPVIALT 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 613307373  81 A---RQEEQTIIQAldnGANDYMTKPFNVDELRARIR 114
Cdd:cd17548   81 AyamKGDREKILEA---GCDGYISKPIDTREFLETVA 114
REC_CheY_CheY3 cd19923
phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY3 and similar CheY ...
 4-116 1.29e-16

phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY3 and similar CheY family proteins; CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY3, Escherichia coli CheY, and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381150 [Multi-domain]  Cd Length: 119  Bit Score: 73.14  E-value: 1.29e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALT-LDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIR---QHTDIPIIVI 79
Cdd:cd19923    2 KVLVVDDFSTMRRIIKNLLKeLGFNNVEEAEDGVDALEKLKAGGFDFVITDWNMPNMDGLELLKTIRadgALSHLPVLMV 81

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 613307373  80 SARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVI 116
Cdd:cd19923   82 TAEAKKENVIAAAQAGVNNYIVKPFTAATLKEKLEKI 118
REC_CheY cd17542
phosphoacceptor receiver (REC) domain of chemotaxis protein CheY; The chemotaxis response ...
 4-121 1.65e-16

phosphoacceptor receiver (REC) domain of chemotaxis protein CheY; The chemotaxis response regulator CheY contains a stand-alone REC domain. Chemotaxis is a behavior known for motile bacteria that directs their movement in response to chemical gradients. CheY is involved in transmitting sensory signals from chemoreceptors to the flagellar motors. Phosphorylated CheY interacts with the flagella switch components FliM and FliY, which causes counterclockwise rotation of the flagella, resulting in smooth swimming. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381097 [Multi-domain]  Cd Length: 117  Bit Score: 72.70  E-value: 1.65e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALTLD-YYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHT-DIPIIVISA 81
Cdd:cd17542    2 KVLIVDDAAFMRMMLKDILTKAgYEVVGEAANGEEAVEKYKELKPDLVTMDITMPEMDGIEALKEIKKIDpNAKVIMCSA 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 613307373  82 RQEEQTIIQALDNGANDYMTKPFNVDelrariRVIERIAK 121
Cdd:cd17542   82 MGQEEMVKEAIKAGAKDFIVKPFQPE------RVLEAVEK 115
REC_PA4781-like cd19920
phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar ...
 5-104 1.87e-16

phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains; Pseudomonas aeruginosa cyclic di-GMP phosphodiesterase PA4781 contains an N-terminal REC domain and a C-terminal catalytic HD-GYP domain, characteristics of RpfG family response regulators. PA4781 is involved in cyclic di-3',5'-GMP (c-di-GMP) hydrolysis/degradation in a two-step reaction via the linear intermediate pGpG to produce GMP. Its unphosphorylated REC domain prevents accessibility of c-di-GMP to the active site. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381147 [Multi-domain]  Cd Length: 103  Bit Score: 72.16  E-value: 1.87e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ--HT-DIPIIVISA 81
Cdd:cd19920    1 ILIVDDVPDNLRLLSELLRAAGYRVLVATDGQQALQRAQAEPPDLILLDVMMPGMDGFEVCRRLKAdpATrHIPVIFLTA 80

                         90       100
                 ....*....|....*....|...
gi 613307373  82 RQEEQTIIQALDNGANDYMTKPF 104
Cdd:cd19920   81 LTDTEDKVKGFELGAVDYITKPF 103
LytT COG3279
DNA-binding response regulator, LytR/AlgR family [Transcription, Signal transduction ...
 4-151 4.81e-16

DNA-binding response regulator, LytR/AlgR family [Transcription, Signal transduction mechanisms];


Pssm-ID: 442510 [Multi-domain]  Cd Length: 235  Bit Score: 74.08  E-value: 4.81e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDD-HAITHLLDVALTLDYYN-VTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ-HTDIPIIVIS 80
Cdd:COG3279    3 KILIVDDEpLARERLERLLEKYPDLEvVGEASNGEEALELLEEHKPDLVFLDIQMPGLDGFELARQLRElDPPPPIIFTT 82

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 613307373  81 ArqEEQTIIQALDNGANDYMTKPFNVDELRARI-RVIERIAKSHQETNFVFTNGLLSIDFGSKSVVINNQEV 151
Cdd:COG3279   83 A--YDEYALEAFEVNAVDYLLKPIDEERLAKALeKAKERLEAKAAAEASPEEKDRIFVKSGGKLVKIPLDDI 152
REC_DctD-like cd17549
phosphoacceptor receiver (REC) domain of C4-dicarboxylic acid transport protein D (DctD) and ...
 5-114 1.11e-15

phosphoacceptor receiver (REC) domain of C4-dicarboxylic acid transport protein D (DctD) and similar proteins; C4-dicarboxylic acid transport protein D (DctD) is part of the two-component regulatory system DctB/DctD, which regulates C4-dicarboxylate transport via regulation of expression of the dctPQM operon and dctA. It is an activator of sigma(54)-RNA polymerase holoenzyme that uses the energy released from ATP hydrolysis to stimulate the isomerization of a closed promoter complex to an open complex capable of initiating transcription. DctD is a member of the NtrC family, characterized by a domain architecture containing an N-terminal REC domain, followed by a central sigma-54 interaction/ATPase domain, and a C-terminal DNA binding domain. The ability of the central domain to hydrolyze ATP and thus to interact effectively with a complex of RNA polymerase, sigma54, and promoter, is controlled by the phosphorylation status of the REC domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381101 [Multi-domain]  Cd Length: 130  Bit Score: 70.98  E-value: 1.11e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ-HTDIPIIVISARQ 83
Cdd:cd17549    1 VLLVDDDADVREALQQTLELAGFRVRAFADAEEALAALSPDFPGVVISDIRMPGMDGLELLAQIRElDPDLPVILITGHG 80

                         90       100       110
                 ....*....|....*....|....*....|.
gi 613307373  84 EEQTIIQALDNGANDYMTKPFNVDELRARIR 114
Cdd:cd17549   81 DVPMAVEAMRAGAYDFLEKPFDPERLLDVVR 111
REC_RcNtrC-like cd19928
phosphoacceptor receiver (REC) domain of Rhodobacter capsulatus nitrogen regulatory protein C ...
 5-103 1.20e-15

phosphoacceptor receiver (REC) domain of Rhodobacter capsulatus nitrogen regulatory protein C (NtrC) and similar NtrC family response regulators; NtrC family proteins are transcriptional regulators that have REC, AAA+ ATPase/sigma-54 interaction, and DNA-binding output domains. This subfamily of NtrC proteins include NtrC, also called nitrogen regulator I (NRI), from Rhodobacter capsulatus, Azospirillum brasilense, and Azorhizobium caulinodans. NtrC is part of the NtrB/NtrC two-component system that controls the expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. The N-terminal REC domain of NtrC proteins regulate the activity of the protein and its phosphorylation controls the AAA+ domain oligomerization, while the central AAA+ domain participates in nucleotide binding, hydrolysis, oligomerization, and sigma54 interaction. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381155 [Multi-domain]  Cd Length: 100  Bit Score: 69.84  E-value: 1.20e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ-HTDIPIIVISARQ 83
Cdd:cd19928    1 ILVADDDRAIRTVLTQALGRAGYEVRTTGNAATLWRWVEEGEGDLVITDVVMPDENGLDLIPRIKKaRPDLPIIVMSAQN 80

                         90       100
                 ....*....|....*....|
gi 613307373  84 EEQTIIQALDNGANDYMTKP 103
Cdd:cd19928   81 TLMTAVKAAERGAFEYLPKP 100
REC_OmpR_ChvI-like cd19936
phosphoacceptor receiver (REC) domain of ChvI-like OmpR family response regulators; ...
 5-103 1.69e-15

phosphoacceptor receiver (REC) domain of ChvI-like OmpR family response regulators; Sinorhizobium meliloti ChvI is part of the ExoS/ChvI two-component regulatory system (TCS) that is required for nitrogen-fixing symbiosis and exopolysaccharide synthesis. ExoS/ChvI also play important roles in regulating biofilm formation, motility, nutrient utilization, and the viability of free-living bacteria. ChvI belongs to the OmpR family of DNA-binding response regulators that contain N-terminal receiver (REC) and C-terminal DNA-binding winged helix-turn-helix effector domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381163 [Multi-domain]  Cd Length: 99  Bit Score: 69.40  E-value: 1.69e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIVISARQE 84
Cdd:cd19936    1 IALVDDDRNILTSVSMALEAEGFSVETYTDGASALDGLNARPPDLAILDIKMPRMDGMELLQRLRQKSTLPVIFLTSKDD 80

                         90
                 ....*....|....*....
gi 613307373  85 EQTIIQALDNGANDYMTKP 103
Cdd:cd19936   81 EIDEVFGLRMGADDYITKP 99
FixJ COG4566
DNA-binding response regulator, FixJ family, consists of REC and HTH domains [Signal ...
 5-125 3.37e-15

DNA-binding response regulator, FixJ family, consists of REC and HTH domains [Signal transduction mechanisms, Transcription];


Pssm-ID: 443623 [Multi-domain]  Cd Length: 196  Bit Score: 71.28  E-value: 3.37e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQ--AHFkiQIDKPDVILLDLGLPDKDGLCLISEIR-QHTDIPIIVISA 81
Cdd:COG4566    2 VYIVDDDEAVRDSLAFLLESAGLRVETFASAEAflAAL--DPDRPGCLLLDVRMPGMSGLELQEELAaRGSPLPVIFLTG 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 613307373  82 RQEEQTIIQALDNGANDYMTKPFNVDELRARI-RVIERIAKSHQE 125
Cdd:COG4566   80 HGDVPMAVRAMKAGAVDFLEKPFDDQALLDAVrRALARDRARRAE 124
REC_OmpR_RegX3-like cd17621
phosphoacceptor receiver (REC) domain of RegX3-like OmpR family response regulators; RegX3 is ...
 5-103 6.11e-15

phosphoacceptor receiver (REC) domain of RegX3-like OmpR family response regulators; RegX3 is a member of the SenX3-RegX3 two-component system that is involved in phosphate-sensing signal transduction. Phosphorylated RegX3 functions as a transcriptional activator of phoA. It induces transcription in phosphate limiting environment and also controls expression of several critical metabolic enzymes in aerobic condition. RegX3 belongs to the OmpR family of DNA-binding response regulators that contain N-terminal receiver and C-terminal DNA-binding winged helix-turn-helix effector domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381136 [Multi-domain]  Cd Length: 99  Bit Score: 67.99  E-value: 6.11e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIVISARQE 84
Cdd:cd17621    1 VLVVEDEESFSDPLAYLLRKEGFEVTVATDGPAALAEFDRAGADIVLLDLMLPGLSGTEVCRQLRARSNVPVIMVTAKDS 80

                         90
                 ....*....|....*....
gi 613307373  85 EQTIIQALDNGANDYMTKP 103
Cdd:cd17621   81 EIDKVVGLELGADDYVTKP 99
REC_CheB-like cd17541
phosphoacceptor receiver (REC) domain of chemotaxis response regulator protein-glutamate ...
 29-119 1.61e-14

phosphoacceptor receiver (REC) domain of chemotaxis response regulator protein-glutamate methylesterase CheB and similar chemotaxis proteins; Methylesterase CheB is a chemotaxis response regulator with an N-terminal REC domain and a C-terminal methylesterase domain. Chemotaxis is a behavior known in motile bacteria that directs their movement in response to chemical gradients. CheB is a phosphorylation-activated response regulator involved in the reversible modification of bacterial chemotaxis receptors. It catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR. The CheB REC domain packs against the active site of the C-terminal domain and inhibits methylesterase activity by directly restricting access to the active site. Also included in this family is chemotaxis response regulator CheY, which contains a stand-alone REC domain, and an uncharacterized subfamily composed of proteins containing an N-terminal REC domain and a C-terminal CheY-P phosphatase (CheC) domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381096 [Multi-domain]  Cd Length: 125  Bit Score: 67.42  E-value: 1.61e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  29 VTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIVISARQEE--QTIIQALDNGANDYMTKP--- 103
Cdd:cd17541   29 VGTARDGEEALEKIKELKPDVITLDIEMPVMDGLEALRRIMAERPTPVVMVSSLTEEgaEITLEALELGAVDFIAKPsgg 108

                         90
                 ....*....|....*...
gi 613307373 104 --FNVDELRARIrvIERI 119
Cdd:cd17541  109 isLDLEEIAEEL--IEKI 124
CadC1 COG3710
DNA-binding winged helix-turn-helix (wHTH) domain [Transcription];
133-224 1.64e-14

DNA-binding winged helix-turn-helix (wHTH) domain [Transcription];


Pssm-ID: 442924 [Multi-domain]  Cd Length: 106  Bit Score: 67.24  E-value: 1.64e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373 133 GLLSIDFGSKSVVINNQEVHLTPNEFSLLELLSNHKGKVLTYEMILKRIYG--YVNKTempSLRVHMTSLRQKLSQCHED 210
Cdd:COG3710    6 GDFRLDPARRELLRDGEPVRLSPRAFDLLLLLLEHPGRVVSRDELLAAVWPgrVVSDN---SLTQAISRLRKALGDDGLE 82

                         90
                 ....*....|....
gi 613307373 211 AkDIIKTHPRIGYQ 224
Cdd:COG3710   83 P-RLIRTVPRRGYR 95
REC_Spo0F-like cd17553
phosphoacceptor receiver (REC) domain of Spo0F and similar domains; Spo0F, a stand-alone ...
 4-114 2.09e-14

phosphoacceptor receiver (REC) domain of Spo0F and similar domains; Spo0F, a stand-alone response regulator containing only a REC domain with no output/effector domain, controls sporulation in Bacillus subtilis through the exchange of a phosphoryl group. Bacillus subtilis forms spores when conditions for growth become unfavorable. The initiation of sporulation is controlled by a phosphorelay (an expanded version of the two-component system) that consists of four main components: a histidine kinase (KinA), a secondary messenger (Spo0F), a phosphotransferase (Spo0B), and a transcription factor (Spo0A). REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381105 [Multi-domain]  Cd Length: 117  Bit Score: 67.19  E-value: 2.09e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ-HTDIPIIVISAR 82
Cdd:cd17553    2 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKViDENIRVIIMTAY 81

                         90       100       110
                 ....*....|....*....|....*....|..
gi 613307373  83 QEEQTIIQALDNGANDYMTKPFNVDELRARIR 114
Cdd:cd17553   82 GELDMIQESKELGALTHFAKPFDIDEIRDAVK 113
Spo0A COG5801
Stage 0 sporulation initiation regulator Spo0A (response regulator, REC-HTH domains) [Cell ...
 4-114 2.52e-14

Stage 0 sporulation initiation regulator Spo0A (response regulator, REC-HTH domains) [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];


Pssm-ID: 444503 [Multi-domain]  Cd Length: 264  Bit Score: 69.83  E-value: 2.52e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALTL--DYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIP---IIV 78
Cdd:COG5801    6 KVLIADDNREFCELLEEYLSSqpDMEVVGVAYNGLEALELIEEKKPDVVILDIIMPHLDGLGVLEKLREMNLEKrpkVIM 85

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 613307373  79 ISARQEEQTIIQALDNGANDYMTKPFNVDELRARIR 114
Cdd:COG5801   86 LTAFGQEDITQRAVELGADYYILKPFDLDVLAERIR 121
REC_YesN-like cd17536
phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response ...
 5-121 4.00e-14

phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators; This family is composed of uncharacterized response regulators that contain a REC domain and a AraC family helix-turn-helix (HTH) DNA-binding output domain, including Bacillus subtilis uncharacterized transcriptional regulatory protein YesN and Staphylococcus aureus uncharacterized response regulatory protein SAR0214. YesN is a member of the two-component regulatory system YesM/YesN and SAR0214 is a member of the probable two-component regulatory system SAR0215/SAR0214. Also included in this family is the AlgR-like group of LytTR/AlgR family response, which includes Pseudomonas aeruginosa positive alginate biosynthesis regulatory protein AlgR and Bacillus subtilis sensory transduction protein LytT, among others. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381091 [Multi-domain]  Cd Length: 121  Bit Score: 66.59  E-value: 4.00e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDH----AITHLLDVAlTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIR-QHTDIPIIVI 79
Cdd:cd17536    1 VLIVDDEPlireGLKKLIDWE-ELGFEVVGEAENGEEALELIEEHKPDIVITDIRMPGMDGLELIEKIReLYPDIKIIIL 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 613307373  80 SARQEEQTIIQALDNGANDYMTKPFNVDELrarIRVIERIAK 121
Cdd:cd17536   80 SGYDDFEYAQKAIRLGVVDYLLKPVDEEEL---EEALEKAKE 118
pleD PRK09581
response regulator PleD; Reviewed
 1-118 5.22e-14

response regulator PleD; Reviewed


Pssm-ID: 236577 [Multi-domain]  Cd Length: 457  Bit Score: 70.31  E-value: 5.22e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   1 MQSKILIIEDDHAITHLLDVALTLDYYNVTTADNATQAhfkIQI---DKPDVILLDLGLPDKDGLCLISEIRQH---TDI 74
Cdd:PRK09581   1 MTARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEA---IAIcerEQPDIILLDVMMPGMDGFEVCRRLKSDpatTHI 77

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 613307373  75 PIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIER 118
Cdd:PRK09581  78 PVVMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTR 121
REC_RR468-like cd17552
phosphoacceptor receiver (REC) domain of Thermotoga maritima response regulator RR468 and ...
 4-114 5.92e-14

phosphoacceptor receiver (REC) domain of Thermotoga maritima response regulator RR468 and similar domains; Thermotoga maritima RR468 (encoded by gene TM0468) is the cognate response regulator (RR) of the class I histidine kinase HK853 (product of gene TM0853). HK853/RR468 comprise a two-component system (TCS) that couples environmental stimuli to adaptive responses. This subfamily also includes Fremyella diplosiphon complementary adaptation response regulator homolog RcaF, a small RR that is involved in four-step phosphorelays of the complementary chromatic adaptation (CCA) system that occurs in many cyanobacteria. Both RR468 and RcaF are stand-alone RRs containing only a REC domain with no output/effector domain. The REC domain itself functions as an effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381104 [Multi-domain]  Cd Length: 121  Bit Score: 66.04  E-value: 5.92e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVAL-TLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHT---DIPIIVI 79
Cdd:cd17552    3 RILVIDDEEDIREVVQACLeKLAGWEVLTASSGQEGLEKAATEQPDAILLDVMMPDMDGLATLKKLQANPetqSIPVILL 82

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 613307373  80 SARQEEQTIIQALDNGANDYMTKPFNVDELRARIR 114
Cdd:cd17552   83 TAKAQPSDRQRFASLGVAGVIAKPFDPLTLAEQIA 117
REC_typeB_ARR-like cd17584
phosphoacceptor receiver (REC) domain of type B Arabidopsis response regulators (ARRs) and ...
 5-111 1.76e-13

phosphoacceptor receiver (REC) domain of type B Arabidopsis response regulators (ARRs) and similar domains; Type-B ARRs (Arabidopsis response regulators) are a class of MYB-type transcription factors that act as major players in the transcriptional activation of cytokinin-responsive genes. They directly regulate the expression of type-A ARR genes and other downstream target genes. Cytokinin is a plant hormone implicated in many growth and development processes including shoot organogenesis, leaf senescence, sink/source relationships, vascular development, lateral bud release, and photomorphogenic development. Cytokinin signaling involves a phosphorelay cascade by histidine kinase receptors (AHKs), histidine phosphotransfer proteins (AHPs) and downstream ARRs. ARRs are divided into two groups, type-A and -B, according to their sequence and domain structure. Type-B ARRs contain a receiver (REC) domain and a large C-terminal extension that has characteristics of an effector or output domain, with a Myb-like DNA binding domain referred to as the GARP domain. The GARP domain is a motif specific to plant transcription factors. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381121 [Multi-domain]  Cd Length: 115  Bit Score: 64.57  E-value: 1.76e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQA--HFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIVISAR 82
Cdd:cd17584    1 VLVVDDDPTCLAILKRMLLRCGYQVTTCTDAEEAlsMLRENKDEFDLVITDVHMPDMDGFEFLELIRLEMDLPVIMMSAD 80

                         90       100
                 ....*....|....*....|....*....
gi 613307373  83 QEEQTIIQALDNGANDYMTKPFNVDELRA 111
Cdd:cd17584   81 GSTSTVMKGLAHGACDYLLKPVSIEDLKN 109
REC_PilR cd19926
phosphoacceptor receiver (REC) domain of type 4 fimbriae expression regulatory protein PilR ...
 5-103 4.76e-13

phosphoacceptor receiver (REC) domain of type 4 fimbriae expression regulatory protein PilR and similar proteins; Pseudomonas aeruginosa PilR is the response regulator of the PilS/PilR two-component regulatory system (PilSR TCS) that acts in conjunction with sigma-54 to regulate the expression of type 4 pilus (T4P) major subunit PilA. In addition, the PilSR TCS regulates flagellum-dependent swimming motility and pilus-dependent twitching motility. PilR contains an N-terminal REC domain, a central sigma-54 interaction domain, and a C-terminal Fis-type helix-turn-helix DNA-binding domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381153 [Multi-domain]  Cd Length: 100  Bit Score: 62.94  E-value: 4.76e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQH-TDIPIIVISARQ 83
Cdd:cd19926    1 VLVVDDEPDIRELLEITLGRMGLDVRSARNVKEARELLASEPYDLCLTDMRLPDGSGLELVQHIQQRlPQTPVAVITAYG 80

                         90       100
                 ....*....|....*....|
gi 613307373  84 EEQTIIQALDNGANDYMTKP 103
Cdd:cd19926   81 SLDTAIEALKAGAFDFLTKP 100
REC_WspR-like cd17575
phosphoacceptor receiver (REC) domain of WspR response regulator and similar proteins; The ...
 46-114 6.90e-13

phosphoacceptor receiver (REC) domain of WspR response regulator and similar proteins; The GGDEF response regulator WspR is part of the Wsp system that is homologous to chemotaxis systems and also includes the membrane-bound receptor protein WspA. In response to growth on surfaces, WspR is phosphorylated by the Wsp signal transduction complex and is activated, functioning as a diguanylate cyclase (DGC) that catalyzes c-di-GMP synthesis. WspR is a hybrid response regulator-diguanylate cyclase, containing an N-terminal REC domain and a C-terminal GGDEF domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381117 [Multi-domain]  Cd Length: 128  Bit Score: 63.20  E-value: 6.90e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 613307373  46 KPDVILLDLGLPDKDGLCLISEIRQH---TDIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIR 114
Cdd:cd17575   45 KPTVILQDLVMPGVDGLTLVRFFRANpatRDIPIIVLSTKEEPEVKSEAFALGANDYLVKLPDKIELVARIR 116
PRK15369 PRK15369
two component system response regulator;
1-102 7.25e-13

two component system response regulator;


Pssm-ID: 185267 [Multi-domain]  Cd Length: 211  Bit Score: 65.10  E-value: 7.25e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   1 MQSKILIIEDDHAITHLLDVALTL--DYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQH-TDIPII 77
Cdd:PRK15369   2 KNYKILLVDDHELIINGIKNMLAPypRYKIVGQVDNGLEVYNACRQLEPDIVILDLGLPGMNGLDVIPQLHQRwPAMNIL 81

                         90       100
                 ....*....|....*....|....*
gi 613307373  78 VISARQEEQTIIQALDNGANDYMTK 102
Cdd:PRK15369  82 VLTARQEEHMASRTLAAGALGYVLK 106
REC_GlnL-like cd17565
phosphoacceptor receiver (REC) domain of transcriptional regulatory protein GlnL and similar ...
 5-103 1.80e-12

phosphoacceptor receiver (REC) domain of transcriptional regulatory protein GlnL and similar proteins; Bacillus subtilis GlnL is part of the GlnK-GlnL (formerly YcbA-YcbB) two-component system that positively regulates the expression of the glsA-glnT (formerly ybgJ-ybgH) operon in response to glutamine. It contains a REC domain and a DNA-binding output domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381112 [Multi-domain]  Cd Length: 103  Bit Score: 61.52  E-value: 1.80e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDvALTLDYYN---VTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ-HTDIPIIVIS 80
Cdd:cd17565    1 FYIVDDDKNIIKILS-DIIEDDDLgevVGEADNGAQAYDEILFLQPDIVLIDLLMPGMDGIQLVRKLKDtGSNGKFIMIS 79

                         90       100
                 ....*....|....*....|...
gi 613307373  81 ARQEEQTIIQALDNGANDYMTKP 103
Cdd:cd17565   80 QVSDKEMIGKAYQAGIEFFINKP 102
REC_hyHK cd17598
phosphoacceptor receiver (REC) domain of uncharacterized hybrid sensor histidine kinase ...
 5-116 1.94e-12

phosphoacceptor receiver (REC) domain of uncharacterized hybrid sensor histidine kinase/response regulators; Typically, two-component regulatory systems (TCSs) consist of a sensor (histidine kinase) that responds to specific input(s) by modifying the output of a cognate response regulator (RR). TCSs allow organisms to sense and respond to changes in environmental conditions. Hybrid sensor histidine kinase/response regulators contain all the elements of a classical TCS in a single polypeptide chain. RRs share the common phosphoacceptor REC domain and different effector/output domains such as DNA, RNA, ligand-binding, protein-binding, or enzymatic domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381128 [Multi-domain]  Cd Length: 118  Bit Score: 61.96  E-value: 1.94e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQH---TDIPIIVISA 81
Cdd:cd17598    1 ILIVEDSPTQAEQLKHILEEQGYKVQVARNGREALAMLAEHRPTLVISDIVMPEMDGYELCRKIKSDpdlKDIPVILLTT 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 613307373  82 RQEEQTIIQALDNGANDYMTKPFNVDELRARIRVI 116
Cdd:cd17598   81 LSDPRDVIRGLECGADNFITKPYDEKYLLSRIKYI 115
PRK15115 PRK15115
response regulator GlrR; Provisional
 3-113 3.16e-12

response regulator GlrR; Provisional


Pssm-ID: 185070 [Multi-domain]  Cd Length: 444  Bit Score: 65.24  E-value: 3.16e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   3 SKILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEI-RQHTDIPIIVISA 81
Cdd:PRK15115   6 AHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNREKVDLVISDLRMDEMDGMQLFAEIqKVQPGMPVIILTA 85

                         90       100       110
                 ....*....|....*....|....*....|..
gi 613307373  82 RQEEQTIIQALDNGANDYMTKPFNVDELRARI 113
Cdd:PRK15115  86 HGSIPDAVAATQQGVFSFLTKPVDRDALYKAI 117
REC_CpdR_CckA-like cd18160
phosphoacceptor receiver (REC) domain of Brucella abortus CpdR and CckA, and similar domains; ...
 4-104 5.54e-12

phosphoacceptor receiver (REC) domain of Brucella abortus CpdR and CckA, and similar domains; Two-component systems (TCSs), consisting of a sensor and a response regulator, are used by bacteria to adapt to changing environments. Processes regulated by TCSs in bacteria include sporulation, pathogenicity, virulence, chemotaxis and membrane transport. Response regulators share the common phosphoacceptor REC domain and differ output domains such as DNA, RNA, ligand, and protein-binding, or enzymatic domain. CpdR is a stand-alone REC protein. CckA is a sensor histidine kinase containing N-terminal PAS domains and a C-terminal REC domain. CpdR and CckA are components of a regulatory phosphorelay system (composed of CckA, ChpT, CtrA and CpdR) that controls Brucella abortus cell growth, division, and intracellular survival inside mammalian host cells. CckA autophosphorylates in the presence of ATP and transfers a phosphoryl group to the conserved aspartic acid residue on its C-terminal REC domain, which is relayed to the ChpT phosphotransferase. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381144 [Multi-domain]  Cd Length: 103  Bit Score: 60.21  E-value: 5.54e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKP-DVILLDLGLPDKDGLCLISEIRQ-HTDIPIIVISA 81
Cdd:cd18160    1 TILLADDEPSVRKFIVTTLKKAGYAVTEAESGAEALEKLQQGKDiDIVVTDIVMPEMDGIELAREARKiDPDVKILFISG 80

                         90       100
                 ....*....|....*....|...
gi 613307373  82 RQEEQTIIQALDNGANDYMTKPF 104
Cdd:cd18160   81 GAAAAPELLSDAVGDNATLKKPF 103
PRK10365 PRK10365
sigma-54-dependent response regulator transcription factor ZraR;
5-124 5.89e-12

sigma-54-dependent response regulator transcription factor ZraR;


Pssm-ID: 182412 [Multi-domain]  Cd Length: 441  Bit Score: 64.28  E-value: 5.89e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ-HTDIPIIVISARQ 83
Cdd:PRK10365   8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATLKEIKAlNPAIPVLIMTAYS 87

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 613307373  84 EEQTIIQALDNGANDYMTKPFNVDELRARIrvIERIAKSHQ 124
Cdd:PRK10365  88 SVETAVEALKTGALDYLIKPLDFDNLQATL--EKALAHTHS 126
pleD PRK09581
response regulator PleD; Reviewed
 3-115 1.02e-11

response regulator PleD; Reviewed


Pssm-ID: 236577 [Multi-domain]  Cd Length: 457  Bit Score: 63.77  E-value: 1.02e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   3 SKILIIEDDHAITHLLDVALTLDYYNVTTADNATQAhFKIQIDKPDVILLDLGLPDKDGLCLISEIR--QHTD-IPIIVI 79
Cdd:PRK09581 156 GRILLVDDDVSQAERIANILKEEFRVVVVSDPSEAL-FNAAETNYDLVIVSANFENYDPLRLCSQLRskERTRyVPILLL 234

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 613307373  80 SARQEEQTIIQALDNGANDYMTKPFNVDELRARIRV 115
Cdd:PRK09581 235 VDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRT 270
REC_Ycf29 cd19927
phosphoacceptor receiver (REC) domain of probable transcriptional regulator Ycf29; Ycf29 is a ...
 5-103 2.05e-11

phosphoacceptor receiver (REC) domain of probable transcriptional regulator Ycf29; Ycf29 is a probable response regulator of a two-component system (TCS), typically consisting a sensor and a response regulator, that functions in adaptation to changing environments. Processes regulated by TCSs in bacteria include sporulation, pathogenicity, virulence, chemotaxis, and membrane transport. Ycf29 contains an N-terminal REC domain and a LuxR-type helix-turn-helix DNA-binding output domain. REC domains function as phosphorylation-mediated switches within RRs, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381154 [Multi-domain]  Cd Length: 102  Bit Score: 58.54  E-value: 2.05e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTD---IPIIVISA 81
Cdd:cd19927    1 ILLVDDDPGIRLAVKDYLEDQGFTVIAASNGLEALDLLNQYIPDLIISDIIMPGVDGYSLLGKLRKNADfdtIPVIFLTA 80

                         90       100
                 ....*....|....*....|..
gi 613307373  82 RQEEQTIIQALDNGANDYMTKP 103
Cdd:cd19927   81 KGMTSDRIKGYNAGCDGYLSKP 102
PRK00742 PRK00742
chemotaxis-specific protein-glutamate methyltransferase CheB;
29-118 2.41e-11

chemotaxis-specific protein-glutamate methyltransferase CheB;


Pssm-ID: 234828 [Multi-domain]  Cd Length: 354  Bit Score: 62.09  E-value: 2.41e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  29 VTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIVISARQEE--QTIIQALDNGANDYMTKPF-- 104
Cdd:PRK00742  32 VGTAPDGLEAREKIKKLNPDVITLDVEMPVMDGLDALEKIMRLRPTPVVMVSSLTERgaEITLRALELGAVDFVTKPFlg 111

                         90       100
                 ....*....|....*....|.
gi 613307373 105 -------NVDELRARIRVIER 118
Cdd:PRK00742 112 islgmdeYKEELAEKVRAAAR 132
PRK10610 PRK10610
chemotaxis protein CheY;
4-119 1.80e-10

chemotaxis protein CheY;


Pssm-ID: 170568 [Multi-domain]  Cd Length: 129  Bit Score: 56.91  E-value: 1.80e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALT-LDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIR---QHTDIPIIVI 79
Cdd:PRK10610   7 KFLVVDDFSTMRRIVRNLLKeLGFNNVEEAEDGVDALNKLQAGGFGFVISDWNMPNMDGLELLKTIRadgAMSALPVLMV 86

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 613307373  80 SARQEEQTIIQALDNGANDYMTKPFNVDELRARI-RVIERI 119
Cdd:PRK10610  87 TAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLnKIFEKL 127
REC_LytTR_AlgR-like cd17532
phosphoacceptor receiver (REC) domain of LytTR/AlgR family response regulators similar to AlgR; ...
 29-124 1.82e-10

phosphoacceptor receiver (REC) domain of LytTR/AlgR family response regulators similar to AlgR; Members of the LytTR/AlgR family of response regulators contain a REC domain and a unique LytTR DNA-binding output domain that lacks the helix-turn-helix motif and consists mostly of beta-strands. Transcriptional regulators with the LytTR-type output domains are involved in biosynthesis of extracellular polysaccharides, fimbriation, expression of exoproteins, including toxins, and quorum sensing. Included in this AlgR-like group of LytTR/AlgR family response regulators are Streptococcus agalactiae sensory transduction protein LytR, Pseudomonas aeruginosa positive alginate biosynthesis regulatory protein AlgR, Bacillus subtilis sensory transduction protein LytT, and Escherichia coli transcriptional regulatory protein BtsR, which are members of two-component regulatory systems. LytR and LytT are components of regulatory systems that regulate genes involved in cell wall metabolism. AlgR positively regulates the algD gene, which codes for a GDP-mannose dehydrogenase, a key enzyme in the alginate biosynthesis pathway. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381087 [Multi-domain]  Cd Length: 118  Bit Score: 56.39  E-value: 1.82e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  29 VTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIV-ISARqeEQTIIQALDNGANDYMTKPFNVD 107
Cdd:cd17532   27 VGEAENGEEALEAIEELKPDVVFLDIQMPGLDGLELAKKLSKLAKPPLIVfVTAY--DEYAVEAFELNAVDYLLKPFSEE 104

                         90
                 ....*....|....*..
gi 613307373 108 ELrarIRVIERIAKSHQ 124
Cdd:cd17532  105 RL---AEALAKLRKRLS 118
REC_FixJ cd17537
phosphoacceptor receiver (REC) domain of FixJ family response regulators; FixJ family response ...
 5-114 2.05e-10

phosphoacceptor receiver (REC) domain of FixJ family response regulators; FixJ family response regulators contain an N-terminal receiver domain (REC) and a C-terminal LuxR family helix-turn-helix (HTH) DNA-binding output domain. The Sinorhizobium meliloti two-component system FixL/FixJ regulates nitrogen fixation in response to oxygen during symbiosis. Under microaerobic conditions, the kinase FixL phosphorylates the response regulator FixJ resulting in the regulation of nitrogen fixation genes such as nifA and fixK. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381092 [Multi-domain]  Cd Length: 116  Bit Score: 56.45  E-value: 2.05e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQ--AHFkiQIDKPDVILLDLGLPDKDGLCLISEIRQ-HTDIPIIVISA 81
Cdd:cd17537    3 VYVVDDDEAVRDSLAFLLRSVGLAVKTFTSASAflAAA--PPDQPGCLVLDVRMPGMSGLELQDELLArGSNIPIIFITG 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 613307373  82 RQEEQTIIQALDNGANDYMTKPFNVDELRARIR 114
Cdd:cd17537   81 HGDVPMAVEAMKAGAVDFLEKPFRDQVLLDAIE 113
psREC-like_D2_PleD cd17539
REC-like adaptor domain (D2) of response regulator PleD; PleD contains a REC domain (D1) with ...
 5-114 2.20e-10

REC-like adaptor domain (D2) of response regulator PleD; PleD contains a REC domain (D1) with the phosphorylatable aspartate, a pseudo receiver (psREC)-like adaptor domain (D2), and the enzymatic diguanylate cyclase (DGC) domain, also called the GGDEF domain according to a conserved sequence motif, as its output domain. The GGDEF-containing PleD response regulators are global regulators of cell metabolism in some important human pathogens. This model describes the REC-like adaptor domain D2 of PleD, which is an inactive domain.


Pssm-ID: 381094 [Multi-domain]  Cd Length: 124  Bit Score: 56.55  E-value: 2.20e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYyNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIR--QHT-DIPIIVISA 81
Cdd:cd17539    1 VLLVDDRPSSAERIAAMLSSEH-EVVVEADPDEALFRAAEGPFDLVIVSLALEDFDGLRLCSQLRslERTrQLPILAVAD 79

                         90       100       110
                 ....*....|....*....|....*....|...
gi 613307373  82 RQEEQTIIQALDNGANDYMTKPFNVDELRARIR 114
Cdd:cd17539   80 PGDRGRLIRALEIGVNDYLVRPIDPNELLARVR 112
REC_PdtaR-like cd19932
phosphoacceptor receiver (REC) domain of PdtaR and similar proteins; This subfamily includes ...
 4-115 3.09e-10

phosphoacceptor receiver (REC) domain of PdtaR and similar proteins; This subfamily includes Mycobacterium tuberculosis PdtaR, also called Rv1626, and similar proteins containing a REC domain and an ANTAR (AmiR and NasR transcription antitermination regulators) RNA-binding output domain. PdtaR is a response regulator that acts at the level of transcriptional antitermination and is a member of the PdtaR/PdtaS two-component regulatory system. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381159 [Multi-domain]  Cd Length: 118  Bit Score: 55.88  E-value: 3.09e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAIThlLDVALTLD---YYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIVIS 80
Cdd:cd19932    2 RVLIAEDEALIR--MDLREMLEeagYEVVGEASDGEEAVELAKKHKPDLVIMDVKMPRLDGIEAAKIITSENIAPIVLLT 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 613307373  81 ARQEEQTIIQALDNGANDYMTKPFNVDELRARIRV 115
Cdd:cd19932   80 AYSQQDLVERAKEAGAMAYLVKPFSESDLIPAIEM 114
REC smart00448
cheY-homologous receiver domain; CheY regulates the clockwise rotation of E. coli flagellar ...
 4-57 3.57e-10

cheY-homologous receiver domain; CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.


Pssm-ID: 214668 [Multi-domain]  Cd Length: 55  Bit Score: 54.11  E-value: 3.57e-10
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 613307373     4 KILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLP 57
Cdd:smart00448   2 RILVVDDDPLLRELLKALLEKEGYEVDEATDGEEALELLKEEKPDLILLDIMMP 55
PEP_resp_reg TIGR02915
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ...
 5-109 4.02e-10

PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]


Pssm-ID: 274348 [Multi-domain]  Cd Length: 445  Bit Score: 58.99  E-value: 4.02e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373    5 ILIIEDDHAITHLLDVALtlDYYNVTTADNATQAHFKIQIDKPDVILLDLGLP-DKDG-----LCLISEIRQHTDIPIIV 78
Cdd:TIGR02915   1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRHEPAVVTLDLGLPpDADGaseglAALQQILAIAPDTKVIV 78

                          90       100       110
                  ....*....|....*....|....*....|.
gi 613307373   79 ISARQEEQTIIQALDNGANDYMTKPFNVDEL 109
Cdd:TIGR02915  79 ITGNDDRENAVKAIGLGAYDFYQKPIDPDVL 109
REC_TPR cd17589
phosphoacceptor receiver (REC) domain of uncharacterized tetratricopeptide repeat (TPR) ...
 5-113 1.02e-09

phosphoacceptor receiver (REC) domain of uncharacterized tetratricopeptide repeat (TPR)-containing response regulators; Response regulators share the common phosphoacceptor REC domain and different output domains. This subfamily contains uncharacterized response regulators with TPR repeats as the effector or output domain, which might contain between 3 to 16 TPR repeats (each about 34 amino acids). TPR-containing proteins occur in all domains of life and the abundance of TPR-containing proteins in a bacterial proteome is not indicative of virulence. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays. Some members in this subfamily may contain inactive REC domains lacking canonical metal-binding and active site residues.


Pssm-ID: 381123 [Multi-domain]  Cd Length: 115  Bit Score: 54.58  E-value: 1.02e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIED-DHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPD-KDGLCLISEIRQHTDIP----IIV 78
Cdd:cd17589    1 FLIVDDqPTFRSMLKSMLRSLGVTRIDTASSGEEALRMCENKTYDIVLCDYNLGKgKNGQQLLEELRHKKLISpstvFIM 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 613307373  79 ISARQEEQTIIQALDNGANDYMTKPFNVDELRARI 113
Cdd:cd17589   81 VTGESSRAMVLSALELEPDDYLLKPFTVSELRERL 115
dpiA PRK10046
two-component response regulator DpiA; Provisional
 5-125 1.18e-09

two-component response regulator DpiA; Provisional


Pssm-ID: 182208 [Multi-domain]  Cd Length: 225  Bit Score: 56.56  E-value: 1.18e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDH--AITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ-HTDIPIIVISA 81
Cdd:PRK10046   7 LLIVEDETplAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQaHYPGDVVFTTA 86

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 613307373  82 RQEEQTIIQALDNGANDYMTKPFNVDEL-------RARIRVIERIAKSHQE 125
Cdd:PRK10046  87 ASDMETVSEAVRCGVFDYLIKPIAYERLgqtltrfRQRKHMLESIDSASQK 137
REC_Spo0A cd17561
phosphoacceptor receiver (REC) domain of Spo0A; Spo0A is a response regulator of the ...
 2-104 3.21e-09

phosphoacceptor receiver (REC) domain of Spo0A; Spo0A is a response regulator of the phosphorelay system in the early stage of spore formation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress and may act in the with sigma factor spo0H to control the expression of some genes that are critical to the sporulation process. Spo0A contains a regulatory N-terminal REC domain and a C-terminal DNA-binding transcription activation domain as its effector/output domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381109 [Multi-domain]  Cd Length: 108  Bit Score: 53.00  E-value: 3.21e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   2 QSKILIIEDDHAITHLLDVALTL--DYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ---HTDIPI 76
Cdd:cd17561    1 KIKVLIADDNREFVQLLEEYLNSqpDMEVVGVAHNGQEALELIEEKEPDVLLLDIIMPHLDGIGVLEKLRRmrlEKRPKI 80

                         90       100
                 ....*....|....*....|....*...
gi 613307373  77 IVISARQEEQTIIQALDNGANDYMTKPF 104
Cdd:cd17561   81 IMLTAFGQEDITQRAVELGASYYILKPF 108
PRK09959 PRK09959
acid-sensing system histidine kinase EvgS;
6-193 4.84e-09

acid-sensing system histidine kinase EvgS;


Pssm-ID: 182169 [Multi-domain]  Cd Length: 1197  Bit Score: 55.90  E-value: 4.84e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373    6 LIIEDDHAITHLL-DVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIR-QHTDIPIIVISARQ 83
Cdd:PRK09959  961 ILIADDHPTNRLLlKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFELTRKLReQNSSLPIWGLTANA 1040

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   84 EEQTIIQALDNGANDYMTKPFNVDELRARIRVIERIAK-----SHQETNFVFTNGLLSIDFGSKSVVINNQEVHLT-PNE 157
Cdd:PRK09959 1041 QANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQVAHiapqyRHLDIEALKNNTANDLQLMQEILMTFQHETHKDlPAA 1120

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 613307373  158 FSLLELLSNHkgkvlTYEMILKRIYGYVNKTEMPSL 193
Cdd:PRK09959 1121 FHALEAGDNR-----TFHQCIHRIHGAANILNLQKL 1151
psREC_PRR cd17582
pseudo receiver domain of pseudo-response regulators; In Arabidopsis, five pseudo-response ...
 5-103 5.02e-09

pseudo receiver domain of pseudo-response regulators; In Arabidopsis, five pseudo-response regulators (PRRs), also called APRRs, comprise a core group of clock components that controls the pace of the central oscillator of the circadian clock, an endogenous time-keeping mechanism that enables organisms to adapt to external daily cycles. The coordinated sequential expression of PRR9 (APRR9), PRR7 (APRR7), PRR5 (APRR5), PRR3 (APRR3), and PRR1 (APRR1) results in circadian waves that may be at the basis of the endogenous circadian clock. PRRs contain an N-terminal pseudo receiver (psREC) domain that resembles the receiver domain of a two-component response regulator, but lacks an aspartate residue that accepts a phosphoryl group from the sensor kinase, and a CCT motif at the C-terminus that contains a putative nuclear localization signal. The psREC domain is involved in protein-protein interactions.


Pssm-ID: 381120 [Multi-domain]  Cd Length: 104  Bit Score: 52.40  E-value: 5.02e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAhFKIQIDKP---DVILLDLGLPDKDGLCLISEIRQHTD---IPIIV 78
Cdd:cd17582    1 VLLVENDDSTRQIVTALLRKCSYEVTAASDGLQA-WDVLEDEQneiDLILTEVDLPVSSGFKLLSYIMRHKIcknIPVIM 79

                         90       100
                 ....*....|....*....|....*
gi 613307373  79 ISARQEEQTIIQALDNGANDYMTKP 103
Cdd:cd17582   80 MSSQDSVGVVFKCLSKGAADYLVKP 104
PRK10693 PRK10693
two-component system response regulator RssB;
32-110 5.84e-09

two-component system response regulator RssB;


Pssm-ID: 182652 [Multi-domain]  Cd Length: 303  Bit Score: 55.00  E-value: 5.84e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  32 ADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQH-TDIPIIVISARQEEQTIIQALDNGANDYMTKPF-NVDEL 109
Cdd:PRK10693   3 AANGVDALELLGGFTPDLIICDLAMPRMNGIEFVEHLRNRgDQTPVLVISATENMADIAKALRLGVQDVLLKPVkDLNRL 82


                 .
gi 613307373 110 R 110
Cdd:PRK10693  83 R 83
REC_HupR-like cd17569
phosphoacceptor receiver (REC) domain of hydrogen uptake protein regulator (HupR) and similar ...
 4-114 1.42e-08

phosphoacceptor receiver (REC) domain of hydrogen uptake protein regulator (HupR) and similar domains; This family is composed of mostly uncharacterized response regulators with similarity to the REC domains of response regulator components of two-component systems that regulates hydrogenase activity, including HupR and HoxA. HupR is part of the HupT/HupR system that controls the synthesis of the membrane-bound [NiFe]hydrogenase, HupSL, of the photosynthetic bacterium Rhodobacter capsulatus. It contains an N-terminal REC domain, a central sigma-54 interaction domain that lacks ATPase activity, and a C-terminal DNA-binding domain. Members of this family contain a REC domain and various output domains including the cyclase homology domain (CHD) and the c-di-GMP phosphodiesterase domains, HD-GYP and EAL. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381113 [Multi-domain]  Cd Length: 118  Bit Score: 51.25  E-value: 1.42e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHT-DIPIIVISAR 82
Cdd:cd17569    2 TILLVDDEPNILKALKRLLRREGYEVLTATSGEEALEILKQEPVDVVISDQRMPGMDGAELLKRVRERYpDTVRILLTGY 81

                         90       100       110
                 ....*....|....*....|....*....|...
gi 613307373  83 QEEQTIIQALDNGAND-YMTKPFNVDELRARIR 114
Cdd:cd17569   82 ADLDAAIEAINEGEIYrFLTKPWDDEELKETIR 114
REC_CheC-like cd17593
phosphoacceptor receiver (REC) domain of uncharacterized response regulators containing a CheC ...
 28-111 1.48e-08

phosphoacceptor receiver (REC) domain of uncharacterized response regulators containing a CheC domain; This subfamily is composed of uncharacterized proteins containing an N-terminal REC domain and a C-terminal CheC domain that may function as the output/effector domain of a response regulator. CheC is a CheY-P phosphatase, affecting the level of phosphorylated CheY which controls the sense of flagella rotation and determine swimming behavior of chemotactic bacteria. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381124 [Multi-domain]  Cd Length: 117  Bit Score: 51.38  E-value: 1.48e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  28 NVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHT-DIPIIVISARQEEQTIIQALDNGANDYMTKPFNV 106
Cdd:cd17593   27 EITFAENGEEALEILREGRIDVLFLDLTMPVMDGYEVLEALPVEQlETKVIVVSGDVQPEAKERVLELGALAFLKKPFDP 106


                 ....*
gi 613307373 107 DELRA 111
Cdd:cd17593  107 EKLAQ 111
PRK12555 PRK12555
chemotaxis-specific protein-glutamate methyltransferase CheB;
4-119 1.63e-08

chemotaxis-specific protein-glutamate methyltransferase CheB;


Pssm-ID: 237135 [Multi-domain]  Cd Length: 337  Bit Score: 53.73  E-value: 1.63e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALTL--DYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIVISA 81
Cdd:PRK12555   2 RIGIVNDSPLAVEALRRALARdpDHEVVWVATDGAQAVERCAAQPPDVILMDLEMPRMDGVEATRRIMAERPCPILIVTS 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 613307373  82 RQEEQT--IIQALDNGANDYMTKPF---------NVDELRARIRVIERI 119
Cdd:PRK12555  82 LTERNAsrVFEAMGAGALDAVDTPTlgigagleeYAAELLAKIDQIGRL 130
REC_PatA-like cd17602
phosphoacceptor receiver (REC) domain of PatA and similar domains; Nostoc sp. (or Anabaena sp.) ...
 5-103 3.77e-08

phosphoacceptor receiver (REC) domain of PatA and similar domains; Nostoc sp. (or Anabaena sp.) PatA is necessary for proper patterning of heterocysts along filaments. PatA contains phosphoacceptor REC domain at its C-terminus and an N-terminal PATAN (PatA N-terminus) domain, which was proposed in a bioinformatics study to mediate protein-protein interactions. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays. Some members of this group may have an inactive REC domain, lacking canonical metal-binding and active site residues.


Pssm-ID: 381129 [Multi-domain]  Cd Length: 102  Bit Score: 49.67  E-value: 3.77e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHT---DIPIIVISA 81
Cdd:cd17602    1 VACVDDRPSIQKMIEYFLEKQGFRVVVIDDPLRALTTLLNSKPDLILIDIDMPDLDGYELCSLLRKSSalkDTPIIMLTG 80

                         90       100
                 ....*....|....*....|..
gi 613307373  82 RQEEQTIIQALDNGANDYMTKP 103
Cdd:cd17602   81 KDGLVDRIRAKMAGASGYLTKP 102
CitB COG2197
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal ...
 4-68 8.31e-08

DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal transduction mechanisms, Transcription];


Pssm-ID: 441799 [Multi-domain]  Cd Length: 131  Bit Score: 49.51  E-value: 8.31e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 613307373   4 KILIIEDD----HAITHLLDvaLTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEI 68
Cdd:COG2197    3 RVLIVDDHplvrEGLRALLE--AEPDIEVVGEAADGEEALELLEELRPDVVLLDIRMPGMDGLEALRRL 69
REC_DesR-like cd19930
phosphoacceptor receiver (REC) domain of DesR and similar proteins; This group is composed of ...
 5-114 1.56e-07

phosphoacceptor receiver (REC) domain of DesR and similar proteins; This group is composed of Bacillus subtilis DesR, Streptococcus pneumoniae response regulator spr1814, and similar proteins, all containing an N-terminal REC domain and a C-terminal LuxR family helix-turn-helix (HTH) DNA-binding output domain. DesR is a response regulator that, together with its cognate sensor kinase DesK, comprises a two-component regulatory system that controls membrane fluidity. Phosphorylation of the REC domain of DesR is allosterically coupled to two distinct exposed surfaces of the protein, controlling noncanonical dimerization/tetramerization, cooperative activation, and DesK binding. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381157 [Multi-domain]  Cd Length: 117  Bit Score: 48.42  E-value: 1.56e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTL--DYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIR-QHTDIPIIVISA 81
Cdd:cd19930    1 VLIAEDQEMVRGALAALLELedDLEVVAQASNGQEALRLVLKHSPDVAILDIEMPGRTGLEVAAELReELPDTKVLIVTT 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 613307373  82 RQEEQTIIQALDNGANDYMTKPFNVDELRARIR 114
Cdd:cd19930   81 FGRPGYFRRALAAGVDGYVLKDRPIEELADAIR 113
REC_typeA_ARR cd17581
phosphoacceptor receiver (REC) domain of type A Arabidopsis response regulators (ARRs) and ...
 5-103 2.19e-07

phosphoacceptor receiver (REC) domain of type A Arabidopsis response regulators (ARRs) and similar proteins; Type-A response regulators of Arabidopsis (ARRs) are involved in cytokinin signaling, which involves a phosphorelay cascade by histidine kinase receptors (AHKs), histidine phosphotransfer proteins (AHPs) and downstream ARRs. Cytokinin is a plant hormone implicated in many growth and development processes including shoot organogenesis, leaf senescence, sink/source relationships, vascular development, lateral bud release, and photomorphogenic development. Type-A ARRs function downstream of and are regulated by type-B ARRs, which are a class of MYB-type transcription factors. As primary cytokinin response genes, type-A ARRs act as redundant negative feedback regulators of cytokinin signaling by inactivating the phosphorelay. ARRs are divided into two groups, type-A and -B, according to their sequence and domain structure. Type-A ARRs are similar in domain structure to CheY, in that they lack a typical output domain and only contain a stand-alone receiver (REC) domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381119 [Multi-domain]  Cd Length: 122  Bit Score: 48.13  E-value: 2.19e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQA-----------HFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHT- 72
Cdd:cd17581    1 VLAVDDSLVDRKVIERLLRISSCRVTAVDSGKRAleflgledeedSSNFNEPKVNMIITDYCMPGMTGYDLLKKVKESSa 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 613307373  73 --DIPIIVISARQEEQTIIQALDNGANDYMTKP 103
Cdd:cd17581   81 lkEIPVVIMSSENIPTRISRCLEEGAEDFLLKP 113
PRK11107 PRK11107
hybrid sensory histidine kinase BarA; Provisional
 28-118 3.16e-07

hybrid sensory histidine kinase BarA; Provisional


Pssm-ID: 236848 [Multi-domain]  Cd Length: 919  Bit Score: 50.62  E-value: 3.16e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  28 NVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ---HTDIPIIVISA---RQEEQTIIQAldnGANDYMT 101
Cdd:PRK11107 693 HVVLCDSGHQAVEQAKQRPFDLILMDIQMPGMDGIRACELIRQlphNQNTPIIAVTAhamAGERERLLSA---GMDDYLA 769

                         90
                 ....*....|....*..
gi 613307373 102 KPfnVDELRARiRVIER 118
Cdd:PRK11107 770 KP--IDEAMLK-QVLLR 783
REC_PhyR cd17540
phosphoacceptor receiver (REC) domain of response regulator PhyR and similar proteins; PhyR is ...
 3-113 6.58e-07

phosphoacceptor receiver (REC) domain of response regulator PhyR and similar proteins; PhyR is a hybrid stress regulator that contains an N-terminal sigma-like (SL) domain and a C-terminal REC domain. Phosphorylation of the REC domain is known to promote binding of the SL domain to an anti-sigma factor. PhyR thus functions as an anti-anti-sigma factor in its phosphorylated state. It is involved in the general stress response. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381095 [Multi-domain]  Cd Length: 117  Bit Score: 46.86  E-value: 6.58e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   3 SKILIIEDDHAIT-HLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPD-KDGLCLISEIRQHTDIPIIVIS 80
Cdd:cd17540    1 TRVLIIEDEPLIAmDLEQIVEDLGHQVVGIARTRDEAVALARRERPDLILADIQLADgSSGIDAVNEILTTHDVPVIFVT 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 613307373  81 ARQEeqtiiqALDNGAN---DYM-TKPFNVDELRARI 113
Cdd:cd17540   81 AYPE------RLLTGERpepTFLiTKPFDPEMVKAAI 111
PRK10651 PRK10651
transcriptional regulator NarL; Provisional
 5-114 1.36e-06

transcriptional regulator NarL; Provisional


Pssm-ID: 182619 [Multi-domain]  Cd Length: 216  Bit Score: 47.33  E-value: 1.36e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIeDDH-----AITHLLDVALTLDYynVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHT-DIPIIV 78
Cdd:PRK10651   9 ILLI-DDHpmlrtGVKQLISMAPDITV--VGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSlSGRIVV 85

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 613307373  79 ISARQEEQTIIQALDNGANDYMTKPFNVDELRARIR 114
Cdd:PRK10651  86 FSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQ 121
REC_NarL cd19931
phosphoacceptor receiver (REC) domain of Nitrate/Nitrite response regulator L (NarL); Nitrate ...
 5-114 2.21e-06

phosphoacceptor receiver (REC) domain of Nitrate/Nitrite response regulator L (NarL); Nitrate/nitrite response regulator protein NarL contains an N-terminal REC domain and a C-terminal LuxR family helix-turn-helix (HTH) DNA-binding output domain. Escherichia coli NarL activates the expression of the nitrate reductase (narGHJI) and formate dehydrogenase-N (fdnGHI) operons, and represses the transcription of the fumarate reductase (frdABCD) operon in response to a nitrate/nitrite induction signal. Phosphorylation of the NarL REC domain releases the C-terminal HTH output domain that subsequently binds specific DNA promoter sites to repress or activate gene expression. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381158 [Multi-domain]  Cd Length: 117  Bit Score: 45.42  E-value: 2.21e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIeDDHA-----ITHLLDvaLTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQH-TDIPIIV 78
Cdd:cd19931    1 VLLI-DDHPllrkgIKQLIE--LDPDFTVVGEASSGEEGIELAERLDPDLILLDLNMKGMSGLDTLKALREEgVSARIVI 77

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 613307373  79 ISARQEEQTIIQALDNGANDYMTKPFNVDELRARIR 114
Cdd:cd19931   78 LTVSDAEDDVVTALRAGADGYLLKDMEPEDLLEALK 113
REC_RocR cd17530
phosphoacceptor receiver (REC) domain of response regulator RocR; The response regulator RocR ...
 4-111 2.32e-06

phosphoacceptor receiver (REC) domain of response regulator RocR; The response regulator RocR from some pathogens contains an N-terminal phosphoreceiver (REC) domain and a C-terminal EAL domain that possesses c-di-GMP specific phosphodiesterase activity. The RocR REC domain is phosphorylated and modulates its EAL domain enzymatic activity, regulating the local level of c-di-GMP. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381086 [Multi-domain]  Cd Length: 123  Bit Score: 45.51  E-value: 2.32e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLL-DVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ-HTDIPIIVIS- 80
Cdd:cd17530    2 RVLVLDDDPFQCMMAaTILEDLGPGNVDEADDGREALVILLCNAPDIIICDLKMPDMDGIEFLRHLAEsHSNAAVILMSg 81

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 613307373  81 --ARQEEQTIIQALDNGAN--DYMTKPFNVDELRA 111
Cdd:cd17530   82 ldGGILESAETLAGANGLNllGTLSKPFSPEELTE 116
fixJ PRK09390
response regulator FixJ; Provisional
 7-127 3.84e-06

response regulator FixJ; Provisional


Pssm-ID: 181815 [Multi-domain]  Cd Length: 202  Bit Score: 46.15  E-value: 3.84e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   7 IIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQH-TDIPIIVISARQEE 85
Cdd:PRK09390   8 VVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGLRFGCVVTDVRMPGIDGIELLRRLKARgSPLPVIVMTGHGDV 87

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 613307373  86 QTIIQALDNGANDYMTKPFN----VDELRARIRVIERIAKSHQETN 127
Cdd:PRK09390  88 PLAVEAMKLGAVDFIEKPFEderlIGAIERALAQAPEAAKSEAVAA 133
REC_CheV-like cd19924
phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins; This ...
 5-103 1.86e-05

phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins; This subfamily includes the REC domains of Bacillus subtilis chemotaxis protein CheV, Myxococcus xanthus gliding motility regulatory protein FrzE, and similar proteins. CheV is a hybrid protein with an N-terminal CheW-like domain and a C-terminal CheY-like REC domain. The CheV pathway is one of three systems employed by B. subtilis for sensory adaptation that contribute to chemotaxis. It is involved in the transmission of sensory signals from chemoreceptors to flagellar motors. Together with CheW, it is involved in the coupling of methyl-accepting chemoreceptors to the central two-component histidine kinase CheA. FrzE is a hybrid sensor histidine kinase/response regulator that is part of the Frz pathway that controls cell reversal frequency to support directional motility during swarming and fruiting body formation. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381151 [Multi-domain]  Cd Length: 111  Bit Score: 42.37  E-value: 1.86e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKP---------DVILLDLGLPDKDGLCLISEIRQH---T 72
Cdd:cd19924    1 ILVVDDSPTARKQLRDLLKNLGFEIAEAVDGEEALNKLENLAKegndlskelDLIITDIEMPKMDGYELTFELRDDprlA 80

                         90       100       110
                 ....*....|....*....|....*....|.
gi 613307373  73 DIPIIVISARQEEQTIIQALDNGANDYMTKP 103
Cdd:cd19924   81 NIPVILNSSLSGEFSRARGKKVGADAYLAKF 111
PRK10430 PRK10430
two-component system response regulator DcuR;
5-104 3.85e-05

two-component system response regulator DcuR;


Pssm-ID: 182454 [Multi-domain]  Cd Length: 239  Bit Score: 43.56  E-value: 3.85e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHL--LDVALTLDYYNVTTADNATQAHFKI-QIDKP-DVILLDLGLPDKDGLCLISEIRQ---HTDIpiI 77
Cdd:PRK10430   4 VLIVDDDAMVAELnrRYVAQIPGFQCCGTASTLEQAKEIIfNSDTPiDLILLDIYMQQENGLDLLPVLHEagcKSDV--I 81

                         90       100
                 ....*....|....*....|....*..
gi 613307373  78 VISARQEEQTIIQALDNGANDYMTKPF 104
Cdd:PRK10430  82 VISSAADAATIKDSLHYGVVDYLIKPF 108
PRK09191 PRK09191
two-component response regulator; Provisional
 1-113 4.57e-05

two-component response regulator; Provisional


Pssm-ID: 236402 [Multi-domain]  Cd Length: 261  Bit Score: 43.30  E-value: 4.57e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   1 MQSKILIIEDDHAIthlldvALTLDY------YNVT-TADNATQAHFKIQIDKPDVILLDLGLPDK-DGLCLISEIRQHT 72
Cdd:PRK09191 136 VATRVLIIEDEPII------AMDLEQlveslgHRVTgIARTRAEAVALAKKTRPGLILADIQLADGsSGIDAVNDILKTF 209

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 613307373  73 DIPIIVISA---------RQEEQTIIqaldngandymTKPFNVDELRARI 113
Cdd:PRK09191 210 DVPVIFITAfperlltgeRPEPAFLI-----------TKPFQPDTVKAAI 248
PRK11091 PRK11091
aerobic respiration control sensor protein ArcB; Provisional
 29-113 6.96e-05

aerobic respiration control sensor protein ArcB; Provisional


Pssm-ID: 236842 [Multi-domain]  Cd Length: 779  Bit Score: 43.39  E-value: 6.96e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  29 VTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDI----PII-----VISARQEeqtiiqALDNGANDY 99
Cdd:PRK11091 552 VDVAMTGKEALEMFDPDEYDLVLLDIQLPDMTGLDIARELRERYPRedlpPLValtanVLKDKKE------YLDAGMDDV 625

                         90
                 ....*....|....
gi 613307373 100 MTKPFNVDELRARI 113
Cdd:PRK11091 626 LSKPLSVPALTAMI 639
PRK10841 PRK10841
two-component system sensor histidine kinase RcsC;
4-122 7.81e-05

two-component system sensor histidine kinase RcsC;


Pssm-ID: 182772 [Multi-domain]  Cd Length: 924  Bit Score: 43.42  E-value: 7.81e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIeDDHAIT-HLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ--HTdIPIIVIS 80
Cdd:PRK10841 803 MILVV-DDHPINrRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLTDVNMPNMDGYRLTQRLRQlgLT-LPVIGVT 880

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 613307373  81 AR---QEEQTIIQAldnGANDYMTKPFNVDELRARIRV-IERIAKS 122
Cdd:PRK10841 881 ANalaEEKQRCLEA---GMDSCLSKPVTLDVLKQTLTVyAERVRKS 923
PRK14084 PRK14084
DNA-binding response regulator;
4-151 1.94e-04

DNA-binding response regulator;


Pssm-ID: 184495 [Multi-domain]  Cd Length: 246  Bit Score: 41.28  E-value: 1.94e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDD----HAITHLLDVALTLDYynVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIvI 79
Cdd:PRK14084   2 KALIVDDEplarNELTYLLNEIGGFEE--INEAENVKETLEALLINQYDIIFLDINLMDESGIELAAKIQKMKEPPAI-I 78

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 613307373  80 SARQEEQTIIQALDNGANDYMTKPFN-------VDELRARIRVIERIAKSHQETNFVFTNGLLSIDFGSKSVVINNQEV 151
Cdd:PRK14084  79 FATAHDQFAVKAFELNATDYILKPFEqkrieqaVNKVRATKAKDDNNASAIANDMSANFDQSLPIEIDDKIHMLNQQDI 157
PRK15347 PRK15347
two component system sensor kinase;
28-103 2.66e-04

two component system sensor kinase;


Pssm-ID: 237951 [Multi-domain]  Cd Length: 921  Bit Score: 41.55  E-value: 2.66e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373  28 NVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGL-CL----ISEIRQHTDIPIIVISARQEEQTIIQALDNGANDYMTK 102
Cdd:PRK15347 716 QVTTAASGTEALELGRQHRFDLVLMDIRMPGLDGLeTTqlwrDDPNNLDPDCMIVALTANAAPEEIHRCKKAGMNHYLTK 795


                 .
gi 613307373 103 P 103
Cdd:PRK15347 796 P 796
PLN03029 PLN03029
type-a response regulator protein; Provisional
 2-127 3.90e-04

type-a response regulator protein; Provisional


Pssm-ID: 215544 [Multi-domain]  Cd Length: 222  Bit Score: 40.40  E-value: 3.90e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   2 QSKILIIEDDHAITHLLDVALTLDYYNVTTADNATQA-----------------------HFKIQIDkpdVILLDLGLPD 58
Cdd:PLN03029   8 QFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKAlkflglheddrsnpdtpsvspnsHQEVEVN---LIITDYCMPG 84

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 613307373  59 KDGLCLISEIRQHT---DIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDEL-RARIRVIERIAKSHQETN 127
Cdd:PLN03029  85 MTGYDLLKKIKESSslrNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLnRLKPHMMKTKSKNQKQEN 157
PRK09958 PRK09958
acid-sensing system DNA-binding response regulator EvgA;
7-113 5.89e-04

acid-sensing system DNA-binding response regulator EvgA;


Pssm-ID: 182168 [Multi-domain]  Cd Length: 204  Bit Score: 39.49  E-value: 5.89e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   7 IIEDDHAITHLLDVALtLDYYNVTTA---DNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEI--RQHTDIpIIVISA 81
Cdd:PRK09958   4 IIIDDHPLAIAAIRNL-LIKNDIEILaelTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLrkRQYSGI-IIIVSA 81

                         90       100       110
                 ....*....|....*....|....*....|..
gi 613307373  82 RQEEQTIIQALDNGANDYMTKPFNVDELRARI 113
Cdd:PRK09958  82 KNDHFYGKHCADAGANGFVSKKEGMNNIIAAI 113
PRK10360 PRK10360
transcriptional regulator UhpA;
49-116 9.01e-04

transcriptional regulator UhpA;


Pssm-ID: 182408 [Multi-domain]  Cd Length: 196  Bit Score: 39.19  E-value: 9.01e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 613307373  49 VILLDLGLPDKDGLCLISEIRQhtDIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVI 116
Cdd:PRK10360  50 VCICDISMPDISGLELLSQLPK--GMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTV 115
PRK11697 PRK11697
two-component system response regulator BtsR;
34-110 1.41e-03

two-component system response regulator BtsR;


Pssm-ID: 236956 [Multi-domain]  Cd Length: 238  Bit Score: 38.67  E-value: 1.41e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 613307373  34 NATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIrQHTDIPIIV-ISARQEEQtiIQALDNGANDYMTKPfnVDELR 110
Cdd:PRK11697  35 NAIEAIGAIHRLKPDVVFLDIQMPRISGLELVGML-DPEHMPYIVfVTAFDEYA--IKAFEEHAFDYLLKP--IDPAR 107
REC_RitR-like cd19922
receiver (REC) domain of orphan response regulator RitR and similar domains; Streptococcus ...
 5-113 2.02e-03

receiver (REC) domain of orphan response regulator RitR and similar domains; Streptococcus pneumoniae RitR (Repressor of iron transport Regulator, formerly RR489) is an orphan two-component signal transduction response regulator that is required for lung pathogenicity. It acts to repress iron uptake via binding the pneumococcal iron uptake (Piu) transporter promoter. Members of this subfamily contain REC and DNA-binding output domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays. However, members of this family do not contain the phosphorylatable aspartic acid residue and are phosphorylation-independent.


Pssm-ID: 381149 [Multi-domain]  Cd Length: 110  Bit Score: 36.69  E-value: 2.02e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   5 ILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCL---ISEIRQHTdiPIIVISA 81
Cdd:cd19922    1 ILLLEKERNLAHFLSLELQKEGYRVDLVETGQEALSLALETDYDLILLNVNLSDMSAQDFaekLSRIKPAS--VIIVLDH 78

                         90       100       110
                 ....*....|....*....|....*....|..
gi 613307373  82 RQEEQTIIQALDNGANDYMTKPFNVDELRARI 113
Cdd:cd19922   79 WEDLQEELEEVQRFAVSYVVKPVLISNLVDKI 110
REC_1_GGDEF cd19921
first phosphoacceptor receiver (REC) domain of uncharacterized GGDEF domain proteins; This ...
 4-102 4.26e-03

first phosphoacceptor receiver (REC) domain of uncharacterized GGDEF domain proteins; This family is composed of uncharacterized PleD-like response regulators that contain two N-terminal REC domains and a C-terminal diguanylate cyclase output domain with the characteristic GGDEF motif at the active site. Unlike PleD which contains a REC-like adaptor domain, the second REC domain of these uncharacterized GGDEF domain proteins contains characteristic metal-binding and active site residues. PleD response regulators are global regulators of cell metabolism in some important human pathogens. This model describes the first REC domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381148 [Multi-domain]  Cd Length: 115  Bit Score: 36.00  E-value: 4.26e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 613307373   4 KILIIEDDHAITHLLDVALT--LDyYNVTTADNATQAHfKIQIDKPD--VILLDLGLPD-KDGlclisEIRQHT---DIP 75
Cdd:cd19921    1 KVLIVEDSKTFSKVLKHLIAqeLG-LEVDVAETLAEAK-ALLEEGDDyfAALVDLNLPDaPNG-----EAVDLVlekGIP 73

                         90       100
                 ....*....|....*....|....*..
gi 613307373  76 IIVISARQEEQTIIQALDNGANDYMTK 102
Cdd:cd19921   74 VIVLTGSFDEDKRETLLSKGVVDYVLK 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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