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Conserved domains on  [gi|613253673|gb|EZY59730|]
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hypothetical protein V061_02744, partial [Staphylococcus aureus R0353]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3113 super family cl12850
Protein of unknown function (DUF3113); This family of proteins has no known function. It has a ...
 1-56 2.47e-26

Protein of unknown function (DUF3113); This family of proteins has no known function. It has a highly conserved sequence.


The actual alignment was detected with superfamily member pfam11310:

Pssm-ID: 288203  Cd Length: 60  Bit Score: 90.04  E-value: 2.47e-26
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 613253673   1 AYINATIDIRIPTEVEYQHFDDVDKEKETLAKRLDNNPDELLKYDSITIRHAYIEV 56
Cdd:pfam11310  5 AYINASIDIRIPTEVESHHFDDIDDEKDMLADRLDDNPDELLKYDNINIKHADIEV 60
 
Name Accession Description Interval E-value
DUF3113 pfam11310
Protein of unknown function (DUF3113); This family of proteins has no known function. It has a ...
 1-56 2.47e-26

Protein of unknown function (DUF3113); This family of proteins has no known function. It has a highly conserved sequence.


Pssm-ID: 288203  Cd Length: 60  Bit Score: 90.04  E-value: 2.47e-26
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 613253673   1 AYINATIDIRIPTEVEYQHFDDVDKEKETLAKRLDNNPDELLKYDSITIRHAYIEV 56
Cdd:pfam11310  5 AYINASIDIRIPTEVESHHFDDIDDEKDMLADRLDDNPDELLKYDNINIKHADIEV 60
 
Name Accession Description Interval E-value
DUF3113 pfam11310
Protein of unknown function (DUF3113); This family of proteins has no known function. It has a ...
 1-56 2.47e-26

Protein of unknown function (DUF3113); This family of proteins has no known function. It has a highly conserved sequence.


Pssm-ID: 288203  Cd Length: 60  Bit Score: 90.04  E-value: 2.47e-26
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 613253673   1 AYINATIDIRIPTEVEYQHFDDVDKEKETLAKRLDNNPDELLKYDSITIRHAYIEV 56
Cdd:pfam11310  5 AYINASIDIRIPTEVESHHFDDIDDEKDMLADRLDDNPDELLKYDNINIKHADIEV 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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